Wall clock time and date at job start Tue Mar 31 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50696 * 109.47547 * 2 1 4 4 C 1.39671 * 126.07279 * 125.00223 * 3 2 1 5 5 C 1.38410 * 105.35915 * 179.97438 * 4 3 2 6 6 C 1.47161 * 126.88268 * 179.97438 * 5 4 3 7 7 O 1.21630 * 119.99942 * 175.79459 * 6 5 4 8 8 N 1.34779 * 120.00143 * 355.79980 * 6 5 4 9 9 C 1.46502 * 120.00013 * 185.33854 * 8 6 5 10 10 H 1.08996 * 109.47225 * 34.99683 * 9 8 6 11 11 C 1.52998 * 109.46865 * 274.99804 * 9 8 6 12 12 C 1.52992 * 109.47049 * 155.00139 * 9 8 6 13 13 H 1.09001 * 109.49727 * 304.92819 * 12 9 8 14 14 C 1.53037 * 109.49820 * 184.83918 * 12 9 8 15 15 C 1.53044 * 109.54268 * 178.68058 * 14 12 9 16 16 C 1.53195 * 109.30805 * 61.36040 * 15 14 12 17 17 N 1.46922 * 108.77933 * 305.36635 * 16 15 14 18 18 C 1.36936 * 120.63052 * 233.58732 * 17 16 15 19 19 H 1.08003 * 119.99645 * 141.69774 * 18 17 16 20 20 C 1.38805 * 120.00197 * 321.70053 * 18 17 16 21 21 N 1.31621 * 120.00256 * 350.28881 * 20 18 17 22 22 Si 1.86810 * 119.99995 * 170.29155 * 20 18 17 23 23 H 1.48494 * 109.46931 * 89.99870 * 22 20 18 24 24 H 1.48495 * 109.46707 * 209.99749 * 22 20 18 25 25 H 1.48494 * 109.46834 * 329.99754 * 22 20 18 26 26 C 1.46921 * 118.73844 * 53.60945 * 17 16 15 27 27 N 1.36593 * 106.23217 * 359.97438 * 5 4 3 28 28 C 1.46503 * 125.19223 * 179.97438 * 27 5 4 29 29 N 1.28442 * 109.62104 * 359.76883 * 27 5 4 30 30 H 1.09007 * 109.47218 * 300.00178 * 1 2 3 31 31 H 1.09000 * 109.47300 * 60.00221 * 1 2 3 32 32 H 1.09002 * 109.47536 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47400 * 120.00317 * 2 1 3 34 34 H 1.09007 * 109.47218 * 239.99822 * 2 1 3 35 35 H 1.07999 * 127.31889 * 359.97438 * 4 3 2 36 36 H 0.96997 * 119.99549 * 5.33651 * 8 6 5 37 37 H 1.09001 * 109.47279 * 179.97438 * 11 9 8 38 38 H 1.09004 * 109.47113 * 300.00249 * 11 9 8 39 39 H 1.09004 * 109.47540 * 60.00086 * 11 9 8 40 40 H 1.09007 * 109.45802 * 298.70070 * 14 12 9 41 41 H 1.09000 * 109.46652 * 58.66083 * 14 12 9 42 42 H 1.08999 * 109.49629 * 301.41634 * 15 14 12 43 43 H 1.08998 * 109.52675 * 181.32988 * 15 14 12 44 44 H 1.09002 * 109.58116 * 185.57702 * 16 15 14 45 45 H 1.09003 * 109.70422 * 65.22595 * 16 15 14 46 46 H 0.96997 * 119.99962 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.59382 * 186.60212 * 26 17 16 48 48 H 1.09010 * 109.58781 * 66.18011 * 26 17 16 49 49 H 1.09004 * 109.47187 * 89.64340 * 28 27 5 50 50 H 1.08996 * 109.47285 * 209.64431 * 28 27 5 51 51 H 1.08998 * 109.47170 * 329.64920 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9170 1.9802 0.9247 5 6 3.0844 3.2942 0.5234 6 6 3.9249 4.3149 1.1695 7 8 4.0405 5.4157 0.6653 8 7 4.5666 4.0298 2.3199 9 6 5.3079 5.0787 3.0245 10 1 4.7897 6.0305 2.9082 11 6 6.7164 5.1899 2.4375 12 6 5.4010 4.7270 4.5105 13 1 4.3999 4.5616 4.9087 14 6 6.0686 5.8777 5.2670 15 6 6.1326 5.5409 6.7586 16 6 6.9765 4.2778 6.9569 17 7 6.4252 3.2042 6.1189 18 6 6.0939 1.9931 6.6653 19 1 5.2120 1.4704 6.3253 20 6 6.8914 1.4372 7.6561 21 7 8.0608 1.9720 7.9370 22 14 6.3050 -0.0702 8.5909 23 1 6.7567 -1.2965 7.8859 24 1 6.8702 -0.0519 9.9639 25 1 4.8219 -0.0601 8.6659 26 6 6.2366 3.4547 4.6836 27 7 2.3131 3.4538 -0.5926 28 6 2.1835 4.6956 -1.3589 29 7 1.7221 2.3477 -0.8702 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.3735 1.4913 1.7727 36 1 4.5377 3.1301 2.6813 37 1 7.2678 5.9707 2.9614 38 1 7.2347 4.2380 2.5538 39 1 6.6501 5.4405 1.3788 40 1 7.0785 6.0261 4.8846 41 1 5.4892 6.7900 5.1254 42 1 5.1248 5.3679 7.1360 43 1 6.5866 6.3706 7.3003 44 1 6.9438 3.9773 8.0042 45 1 8.0081 4.4755 6.6655 46 1 8.6182 1.5832 8.6291 47 1 5.7157 2.6110 4.2307 48 1 7.2071 3.5870 4.2051 49 1 2.9495 4.7260 -2.1339 50 1 1.1972 4.7362 -1.8211 51 1 2.3076 5.5488 -0.6919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025572569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:48 Heat of formation + Delta-G solvation = 42.757755 kcal Electronic energy + Delta-G solvation = -29653.997177 eV Core-core repulsion = 25782.949314 eV Total energy + Delta-G solvation = -3871.047862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.66963 -39.77589 -37.99050 -35.38110 -34.81542 -33.19071 -32.11965 -31.46959 -30.44553 -30.23699 -28.10887 -27.06812 -25.30723 -24.50892 -23.57156 -22.97285 -22.15125 -21.19108 -20.24311 -19.51921 -18.57834 -17.75138 -16.68495 -16.48559 -16.32696 -15.56223 -14.92172 -14.89838 -14.56842 -14.33856 -14.29688 -14.03702 -13.95708 -13.74360 -13.47158 -13.08890 -13.05132 -12.68828 -12.53754 -12.38916 -12.30950 -12.25718 -11.82867 -11.65434 -11.64836 -11.43561 -10.99743 -10.94001 -10.67694 -10.62168 -10.54544 -10.23499 -10.20687 -10.03972 -9.92073 -9.65343 -9.40505 -9.29204 -9.00684 -8.93410 -8.50967 -6.53292 -5.82821 -3.37592 1.16632 2.24999 2.42373 3.14961 3.19743 3.33610 3.40957 3.42323 4.28042 4.43580 4.46481 4.75743 4.93914 4.99479 5.01542 5.14878 5.17753 5.20505 5.30103 5.34680 5.36556 5.38776 5.52783 5.55979 5.62177 5.65634 5.69074 5.75040 5.83319 5.94095 5.98052 6.05335 6.09853 6.19886 6.23211 6.31000 6.36517 6.46060 6.55989 6.58953 6.62124 6.67923 6.76062 6.83819 6.97457 7.34504 7.45041 7.61201 7.76922 7.93527 8.10181 8.48310 9.19616 9.78840 10.42156 11.24818 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.003271 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.235845 B = 8559.315121 C =10754.071642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.037 4.037 3 C 0.026 3.974 4 C -0.183 4.183 5 C -0.035 4.035 6 C 0.591 3.409 7 O -0.548 6.548 8 N -0.702 5.702 9 C 0.153 3.847 10 H 0.082 0.918 11 C -0.166 4.166 12 C -0.114 4.114 13 H 0.072 0.928 14 C -0.099 4.099 15 C -0.143 4.143 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.262 4.262 19 H 0.059 0.941 20 C 0.014 3.986 21 N -0.898 5.898 22 Si 0.900 3.100 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.151 3.849 27 N -0.259 5.259 28 C 0.088 3.912 29 N -0.277 5.277 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.163 0.837 36 H 0.406 0.594 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.020 0.980 46 H 0.254 0.746 47 H 0.047 0.953 48 H 0.026 0.974 49 H 0.083 0.917 50 H 0.091 0.909 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 3.385 -14.842 18.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.130 4.130 4 C -0.212 4.212 5 C -0.164 4.164 6 C 0.376 3.624 7 O -0.427 6.427 8 N -0.353 5.353 9 C 0.049 3.951 10 H 0.100 0.900 11 C -0.224 4.224 12 C -0.135 4.135 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.049 3.951 17 N -0.311 5.311 18 C -0.392 4.392 19 H 0.077 0.923 20 C -0.186 4.186 21 N -0.541 5.541 22 Si 0.730 3.270 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.025 3.975 27 N -0.046 5.046 28 C -0.052 4.052 29 N -0.111 5.111 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.180 0.820 36 H 0.242 0.758 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.101 0.899 50 H 0.109 0.891 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.659 4.474 -16.076 19.800 hybrid contribution 0.294 -1.295 1.396 1.927 sum -10.365 3.179 -14.679 18.249 Atomic orbital electron populations 1.21709 0.94653 1.01642 1.02366 1.19884 0.96135 0.88381 1.03209 1.21975 1.00149 0.96732 0.94162 1.22219 1.03338 0.92591 1.03071 1.21442 1.03571 0.96758 0.94604 1.16902 0.78891 0.85675 0.80905 1.90758 1.64444 1.23531 1.63920 1.45910 1.51331 1.14826 1.23225 1.21103 0.92092 0.90352 0.91572 0.89957 1.22268 0.96330 1.03038 1.00738 1.21979 1.01262 0.98928 0.91304 0.90921 1.21407 0.99946 0.95956 0.96442 1.22184 1.01448 0.99935 0.94620 1.20687 0.92852 0.84763 0.96825 1.43874 1.75136 1.11022 1.01056 1.19045 1.04790 0.96254 1.19112 0.92295 1.25328 0.94692 0.97591 1.00998 1.69981 1.09637 1.41584 1.32854 0.86346 0.78369 0.83097 0.79214 1.21197 1.21570 1.20323 1.21024 0.95956 0.92932 0.87621 1.45514 1.30600 1.09399 1.19121 1.22300 1.03953 0.81932 0.96990 1.73076 1.20058 0.92639 1.25287 0.92680 0.92294 0.92296 0.89782 0.90518 0.81993 0.75764 0.91274 0.91428 0.92761 0.92163 0.93548 0.92805 0.93238 0.90838 0.96208 0.93551 0.93452 0.95614 0.89855 0.89074 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.88 37.15 0.37 -0.86 16 2 C -0.04 -0.33 6.51 -27.89 -0.18 -0.52 16 3 C 0.03 0.31 6.49 -82.47 -0.54 -0.22 16 4 C -0.18 -2.21 10.43 -38.98 -0.41 -2.61 16 5 C -0.04 -0.47 6.96 -82.06 -0.57 -1.04 16 6 C 0.59 8.29 7.75 -12.64 -0.10 8.19 16 7 O -0.55 -8.64 14.41 5.25 0.08 -8.56 16 8 N -0.70 -9.29 5.00 -54.97 -0.27 -9.56 16 9 C 0.15 2.13 2.31 -67.93 -0.16 1.97 16 10 H 0.08 1.18 7.66 -51.93 -0.40 0.79 16 11 C -0.17 -2.25 8.76 37.16 0.33 -1.93 16 12 C -0.11 -1.80 2.27 -90.51 -0.21 -2.01 16 13 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 14 C -0.10 -1.57 4.89 -26.69 -0.13 -1.70 16 15 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 16 C 0.17 3.98 5.22 -3.71 -0.02 3.97 16 17 N -0.59 -13.96 2.94 -172.32 -0.51 -14.47 16 18 C -0.26 -6.89 9.49 -15.06 -0.14 -7.03 16 19 H 0.06 1.52 7.85 -52.48 -0.41 1.11 16 20 C 0.01 0.38 5.03 -17.43 -0.09 0.29 16 21 N -0.90 -25.41 11.55 55.49 0.64 -24.77 16 22 Si 0.90 20.98 29.57 -169.99 -5.03 15.96 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.15 2.89 5.26 -3.71 -0.02 2.87 16 27 N -0.26 -3.29 3.75 -63.88 -0.24 -3.53 16 28 C 0.09 0.85 10.77 59.85 0.64 1.49 16 29 N -0.28 -3.59 11.88 33.64 0.40 -3.19 16 30 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.16 1.63 7.58 -52.49 -0.40 1.23 16 36 H 0.41 5.02 6.30 -40.82 -0.26 4.77 16 37 H 0.07 0.89 6.59 -51.93 -0.34 0.55 16 38 H 0.07 0.96 6.23 -51.93 -0.32 0.64 16 39 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.06 0.94 6.63 -51.93 -0.34 0.60 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.89 6.64 -51.93 -0.34 1.54 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.05 0.87 6.75 -51.93 -0.35 0.52 16 48 H 0.03 0.51 6.06 -51.92 -0.31 0.20 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.11 1.11 6.43 -51.93 -0.33 0.78 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -31.00 397.30 -8.77 -39.77 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.44 Total: 4.26 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.38 Total: -1.88 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.02 Total: -55.53 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.08 Total: -8.56 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.00 -8.77 -39.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025572569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.524 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds