Wall clock time and date at job start Tue Mar 31 2020 18:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50696 * 109.47547 * 2 1 4 4 C 1.39671 * 126.07279 * 125.00223 * 3 2 1 5 5 C 1.38410 * 105.35915 * 179.97438 * 4 3 2 6 6 C 1.47161 * 126.88268 * 179.97438 * 5 4 3 7 7 O 1.21630 * 119.99942 * 175.79459 * 6 5 4 8 8 N 1.34779 * 120.00143 * 355.79980 * 6 5 4 9 9 C 1.46502 * 120.00013 * 185.33854 * 8 6 5 10 10 H 1.08996 * 109.47225 * 34.99683 * 9 8 6 11 11 C 1.52998 * 109.46865 * 274.99804 * 9 8 6 12 12 C 1.52992 * 109.47049 * 155.00139 * 9 8 6 13 13 H 1.09001 * 109.49727 * 304.92819 * 12 9 8 14 14 C 1.53037 * 109.49820 * 184.83918 * 12 9 8 15 15 C 1.53044 * 109.54268 * 178.68058 * 14 12 9 16 16 C 1.53195 * 109.30805 * 61.36040 * 15 14 12 17 17 N 1.46922 * 108.77933 * 305.36635 * 16 15 14 18 18 C 1.36936 * 120.63052 * 233.58732 * 17 16 15 19 19 H 1.08003 * 119.99645 * 141.69774 * 18 17 16 20 20 C 1.38805 * 120.00197 * 321.70053 * 18 17 16 21 21 N 1.31621 * 120.00256 * 350.28881 * 20 18 17 22 22 Si 1.86810 * 119.99995 * 170.29155 * 20 18 17 23 23 H 1.48494 * 109.46931 * 89.99870 * 22 20 18 24 24 H 1.48495 * 109.46707 * 209.99749 * 22 20 18 25 25 H 1.48494 * 109.46834 * 329.99754 * 22 20 18 26 26 C 1.46921 * 118.73844 * 53.60945 * 17 16 15 27 27 N 1.36593 * 106.23217 * 359.97438 * 5 4 3 28 28 C 1.46503 * 125.19223 * 179.97438 * 27 5 4 29 29 N 1.28442 * 109.62104 * 359.76883 * 27 5 4 30 30 H 1.09007 * 109.47218 * 300.00178 * 1 2 3 31 31 H 1.09000 * 109.47300 * 60.00221 * 1 2 3 32 32 H 1.09002 * 109.47536 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47400 * 120.00317 * 2 1 3 34 34 H 1.09007 * 109.47218 * 239.99822 * 2 1 3 35 35 H 1.07999 * 127.31889 * 359.97438 * 4 3 2 36 36 H 0.96997 * 119.99549 * 5.33651 * 8 6 5 37 37 H 1.09001 * 109.47279 * 179.97438 * 11 9 8 38 38 H 1.09004 * 109.47113 * 300.00249 * 11 9 8 39 39 H 1.09004 * 109.47540 * 60.00086 * 11 9 8 40 40 H 1.09007 * 109.45802 * 298.70070 * 14 12 9 41 41 H 1.09000 * 109.46652 * 58.66083 * 14 12 9 42 42 H 1.08999 * 109.49629 * 301.41634 * 15 14 12 43 43 H 1.08998 * 109.52675 * 181.32988 * 15 14 12 44 44 H 1.09002 * 109.58116 * 185.57702 * 16 15 14 45 45 H 1.09003 * 109.70422 * 65.22595 * 16 15 14 46 46 H 0.96997 * 119.99962 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.59382 * 186.60212 * 26 17 16 48 48 H 1.09010 * 109.58781 * 66.18011 * 26 17 16 49 49 H 1.09004 * 109.47187 * 89.64340 * 28 27 5 50 50 H 1.08996 * 109.47285 * 209.64431 * 28 27 5 51 51 H 1.08998 * 109.47170 * 329.64920 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.9170 1.9802 0.9247 5 6 3.0844 3.2942 0.5234 6 6 3.9249 4.3149 1.1695 7 8 4.0405 5.4157 0.6653 8 7 4.5666 4.0298 2.3199 9 6 5.3079 5.0787 3.0245 10 1 4.7897 6.0305 2.9082 11 6 6.7164 5.1899 2.4375 12 6 5.4010 4.7270 4.5105 13 1 4.3999 4.5616 4.9087 14 6 6.0686 5.8777 5.2670 15 6 6.1326 5.5409 6.7586 16 6 6.9765 4.2778 6.9569 17 7 6.4252 3.2042 6.1189 18 6 6.0939 1.9931 6.6653 19 1 5.2120 1.4704 6.3253 20 6 6.8914 1.4372 7.6561 21 7 8.0608 1.9720 7.9370 22 14 6.3050 -0.0702 8.5909 23 1 6.7567 -1.2965 7.8859 24 1 6.8702 -0.0519 9.9639 25 1 4.8219 -0.0601 8.6659 26 6 6.2366 3.4547 4.6836 27 7 2.3131 3.4538 -0.5926 28 6 2.1835 4.6956 -1.3589 29 7 1.7221 2.3477 -0.8702 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.3735 1.4913 1.7727 36 1 4.5377 3.1301 2.6813 37 1 7.2678 5.9707 2.9614 38 1 7.2347 4.2380 2.5538 39 1 6.6501 5.4405 1.3788 40 1 7.0785 6.0261 4.8846 41 1 5.4892 6.7900 5.1254 42 1 5.1248 5.3679 7.1360 43 1 6.5866 6.3706 7.3003 44 1 6.9438 3.9773 8.0042 45 1 8.0081 4.4755 6.6655 46 1 8.6182 1.5832 8.6291 47 1 5.7157 2.6110 4.2307 48 1 7.2071 3.5870 4.2051 49 1 2.9495 4.7260 -2.1339 50 1 1.1972 4.7362 -1.8211 51 1 2.3076 5.5488 -0.6919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025572569.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:43 Heat of formation + Delta-G solvation = 24.749295 kcal Electronic energy + Delta-G solvation = -29654.778082 eV Core-core repulsion = 25782.949314 eV Total energy + Delta-G solvation = -3871.828767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.59090 -40.94516 -39.38909 -36.72943 -35.69908 -34.73689 -33.25470 -32.44221 -32.20446 -31.37245 -29.43518 -27.86371 -27.17092 -25.69417 -24.31950 -24.20381 -23.74963 -22.37846 -21.49455 -20.65478 -19.86800 -18.81165 -18.45847 -17.46114 -17.33923 -16.82599 -16.60368 -16.07091 -15.70958 -15.66734 -15.40118 -15.10623 -14.99500 -14.85926 -14.70226 -14.60956 -14.02295 -13.96674 -13.81880 -13.66603 -13.44491 -13.27216 -13.00223 -12.98627 -12.74778 -12.70205 -12.35231 -12.31043 -12.17189 -12.02367 -11.97172 -11.68825 -11.51614 -11.47295 -11.32180 -11.07090 -10.99917 -10.52045 -10.34491 -10.01644 -9.86064 -8.46850 -7.83538 -5.41553 0.17460 1.36078 1.48539 1.50102 1.51729 1.58820 2.11058 2.17905 2.52417 3.32556 3.43528 3.49009 3.62988 3.92079 3.96866 4.02264 4.07990 4.26432 4.27753 4.31623 4.37046 4.42581 4.47357 4.49666 4.53276 4.60286 4.68102 4.73172 4.76450 4.85407 4.88745 4.90703 4.99599 5.07096 5.12406 5.17323 5.23220 5.24216 5.32548 5.36798 5.39040 5.44566 5.51145 5.52189 5.59507 5.71065 5.76162 5.80594 6.37677 6.48378 6.97136 7.06594 7.21559 7.88890 8.46217 9.21095 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010762 B = 0.003271 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.235845 B = 8559.315121 C =10754.071642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.038 4.038 3 C 0.018 3.982 4 C -0.184 4.184 5 C -0.054 4.054 6 C 0.594 3.406 7 O -0.567 6.567 8 N -0.698 5.698 9 C 0.163 3.837 10 H 0.087 0.913 11 C -0.160 4.160 12 C -0.098 4.098 13 H 0.067 0.933 14 C -0.097 4.097 15 C -0.131 4.131 16 C 0.179 3.821 17 N -0.607 5.607 18 C -0.267 4.267 19 H 0.063 0.937 20 C -0.040 4.040 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.282 1.282 24 H -0.296 1.296 25 H -0.268 1.268 26 C 0.151 3.849 27 N -0.266 5.266 28 C 0.084 3.916 29 N -0.290 5.290 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.179 0.821 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.069 0.931 44 H 0.036 0.964 45 H -0.003 1.003 46 H 0.249 0.751 47 H 0.052 0.948 48 H 0.022 0.978 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 3.354 -15.782 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.138 4.138 4 C -0.213 4.213 5 C -0.182 4.182 6 C 0.380 3.620 7 O -0.447 6.447 8 N -0.349 5.349 9 C 0.059 3.941 10 H 0.105 0.895 11 C -0.218 4.218 12 C -0.118 4.118 13 H 0.086 0.914 14 C -0.135 4.135 15 C -0.170 4.170 16 C 0.054 3.946 17 N -0.330 5.330 18 C -0.398 4.398 19 H 0.081 0.919 20 C -0.236 4.236 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.223 1.223 25 H -0.193 1.193 26 C 0.025 3.975 27 N -0.053 5.053 28 C -0.055 4.055 29 N -0.124 5.124 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.196 0.804 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.015 0.985 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.039 0.961 49 H 0.110 0.890 50 H 0.129 0.871 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.042 4.449 -17.042 21.336 hybrid contribution 0.707 -1.283 1.636 2.196 sum -11.334 3.166 -15.406 19.386 Atomic orbital electron populations 1.21673 0.94243 1.02580 1.01468 1.20024 0.96441 0.86882 1.04325 1.22488 0.99852 0.97746 0.93697 1.22511 1.03113 0.92248 1.03452 1.21457 1.04284 0.97090 0.95379 1.16972 0.78691 0.85533 0.80791 1.90745 1.65166 1.24352 1.64465 1.45839 1.51096 1.14901 1.23060 1.20941 0.92445 0.90600 0.90128 0.89537 1.22213 0.96003 1.02859 1.00745 1.21748 1.00084 0.97261 0.92745 0.91415 1.21405 1.00780 0.96953 0.94334 1.22015 1.00144 0.97966 0.96914 1.20509 0.92736 0.86751 0.94624 1.44133 1.75174 1.10671 1.03069 1.19401 1.04607 0.96929 1.18852 0.91899 1.26041 0.94906 1.00379 1.02302 1.70135 1.10884 1.43102 1.33564 0.85364 0.78230 0.79933 0.77436 1.20890 1.22266 1.19281 1.21133 0.96409 0.94929 0.84979 1.45810 1.30342 1.09980 1.19180 1.22460 1.05476 0.80724 0.96840 1.73073 1.20451 0.93034 1.25852 0.93471 0.93251 0.90450 0.88358 0.89672 0.80409 0.75249 0.90419 0.92285 0.92873 0.91765 0.90574 0.93184 0.91281 0.94528 0.98468 0.94180 0.92916 0.96051 0.88980 0.87117 0.87976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.88 71.98 0.71 -1.43 16 2 C -0.04 -0.61 6.51 29.84 0.19 -0.42 16 3 C 0.02 0.40 6.49 43.05 0.28 0.68 16 4 C -0.18 -4.17 10.43 22.66 0.24 -3.93 16 5 C -0.05 -1.36 6.96 40.79 0.28 -1.07 16 6 C 0.59 15.91 7.75 86.59 0.67 16.58 16 7 O -0.57 -17.20 14.41 -4.13 -0.06 -17.26 16 8 N -0.70 -17.36 5.00 -446.07 -2.23 -19.59 16 9 C 0.16 4.21 2.31 44.99 0.10 4.31 16 10 H 0.09 2.25 7.66 -2.39 -0.02 2.24 16 11 C -0.16 -4.06 8.76 71.98 0.63 -3.43 16 12 C -0.10 -2.91 2.27 -10.72 -0.02 -2.94 16 13 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.10 -2.81 4.89 30.62 0.15 -2.66 16 15 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 16 C 0.18 8.32 5.22 86.36 0.45 8.77 16 17 N -0.61 -28.88 2.94 -699.09 -2.05 -30.93 16 18 C -0.27 -14.08 9.49 84.03 0.80 -13.28 16 19 H 0.06 3.20 7.85 -2.91 -0.02 3.18 16 20 C -0.04 -2.16 5.03 84.86 0.43 -1.73 16 21 N -0.93 -54.16 11.55 21.65 0.25 -53.91 16 22 Si 0.96 43.47 29.57 68.60 2.03 45.50 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.15 5.64 5.26 86.36 0.45 6.09 16 27 N -0.27 -6.47 3.75 -356.02 -1.33 -7.81 16 28 C 0.08 1.53 10.77 127.77 1.38 2.90 16 29 N -0.29 -7.19 11.88 -47.50 -0.56 -7.75 16 30 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.29 8.12 -2.39 -0.02 1.27 16 34 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.18 3.25 7.58 -2.91 -0.02 3.23 16 36 H 0.41 9.50 6.30 -92.71 -0.58 8.92 16 37 H 0.08 1.84 6.59 -2.39 -0.02 1.82 16 38 H 0.06 1.60 6.23 -2.38 -0.01 1.58 16 39 H 0.05 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.06 1.85 6.63 -2.38 -0.02 1.83 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.04 1.94 6.64 -2.39 -0.02 1.92 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.25 14.09 8.31 -92.71 -0.77 13.31 16 47 H 0.05 1.88 6.75 -2.39 -0.02 1.86 16 48 H 0.02 0.84 6.06 -2.38 -0.01 0.82 16 49 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.10 2.01 6.43 -2.39 -0.02 1.99 16 Total: -1.00 -66.96 397.30 3.30 -63.65 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.34 Total: 24.07 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.93 Total: 4.03 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -5.93 Total: -119.99 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.06 Total: -17.26 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -66.96 3.30 -63.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025572569.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.401 kcal (2) G-P(sol) polarization free energy of solvation -66.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds