Wall clock time and date at job start Tue Mar 31 2020 18:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47277 * 2 1 4 4 C 1.35360 * 126.38779 * 84.97316 * 3 2 1 5 5 C 1.41503 * 105.50811 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.52217 * 180.02562 * 5 4 3 7 7 O 1.21577 * 119.99817 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00141 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99940 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46808 * 35.00076 * 9 8 6 11 11 C 1.52993 * 109.47406 * 274.99753 * 9 8 6 12 12 C 1.53007 * 109.46856 * 154.99473 * 9 8 6 13 13 H 1.09002 * 109.51963 * 60.08828 * 12 9 8 14 14 C 1.53042 * 109.49559 * 180.15883 * 12 9 8 15 15 C 1.53351 * 109.60803 * 181.32703 * 14 12 9 16 16 C 1.53189 * 109.14968 * 298.71733 * 15 14 12 17 17 N 1.46925 * 108.89498 * 54.57615 * 16 15 14 18 18 C 1.36933 * 120.63376 * 126.34355 * 17 16 15 19 19 H 1.08007 * 119.99785 * 332.55589 * 18 17 16 20 20 C 1.38811 * 120.00685 * 152.55685 * 18 17 16 21 21 N 1.31606 * 120.00547 * 159.32495 * 20 18 17 22 22 Si 1.86806 * 119.99505 * 339.32413 * 20 18 17 23 23 H 1.48501 * 109.46946 * 92.92636 * 22 20 18 24 24 H 1.48496 * 109.46962 * 212.93106 * 22 20 18 25 25 H 1.48503 * 109.47163 * 332.92869 * 22 20 18 26 26 C 1.46930 * 118.73896 * 306.32231 * 17 16 15 27 27 N 1.31805 * 106.96222 * 0.26747 * 5 4 3 28 28 N 1.28471 * 110.06865 * 359.55558 * 27 5 4 29 29 C 1.46507 * 124.88295 * 180.20503 * 28 27 5 30 30 H 1.09002 * 109.46618 * 299.99808 * 1 2 3 31 31 H 1.08995 * 109.46856 * 59.99644 * 1 2 3 32 32 H 1.08995 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47065 * 239.99910 * 2 1 3 34 34 H 1.08995 * 109.46856 * 120.00356 * 2 1 3 35 35 H 1.08010 * 127.24875 * 0.02626 * 4 3 2 36 36 H 0.96999 * 120.00337 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46963 * 59.99882 * 11 9 8 38 38 H 1.08998 * 109.47324 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.47004 * 300.00318 * 11 9 8 40 40 H 1.08996 * 109.46308 * 301.34320 * 14 12 9 41 41 H 1.09001 * 109.45926 * 61.31229 * 14 12 9 42 42 H 1.09002 * 109.68043 * 178.74829 * 15 14 12 43 43 H 1.09001 * 109.46879 * 58.55420 * 15 14 12 44 44 H 1.08999 * 109.58425 * 294.71399 * 16 15 14 45 45 H 1.09000 * 109.58811 * 174.43590 * 16 15 14 46 46 H 0.96999 * 120.00524 * 180.02562 * 21 20 18 47 47 H 1.08992 * 109.58650 * 173.39595 * 26 17 16 48 48 H 1.09001 * 109.58325 * 293.67528 * 26 17 16 49 49 H 1.09000 * 109.47426 * 270.29083 * 29 28 27 50 50 H 1.09007 * 109.47076 * 30.28865 * 29 28 27 51 51 H 1.08999 * 109.47399 * 150.28580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2101 2.2096 1.0855 5 6 2.6919 3.4416 0.5830 6 6 3.0413 4.6379 1.3758 7 8 2.9238 4.6210 2.5857 8 7 3.4903 5.7483 0.7578 9 6 3.8373 6.9347 1.5442 10 1 4.2684 6.6260 2.4966 11 6 2.5772 7.7639 1.7996 12 6 4.8551 7.7778 0.7732 13 1 4.4243 8.0882 -0.1788 14 6 5.2210 9.0153 1.5958 15 6 6.2159 9.8791 0.8112 16 6 7.4915 9.0702 0.5558 17 7 7.1307 7.8095 -0.1070 18 6 7.7281 7.4440 -1.2837 19 1 8.1059 8.2008 -1.9553 20 6 7.8481 6.1010 -1.6134 21 7 8.0321 5.7450 -2.8670 22 14 7.7485 4.7989 -0.2776 23 1 6.3472 4.3234 -0.1534 24 1 8.6291 3.6572 -0.6327 25 1 8.1901 5.3811 1.0152 26 6 6.1171 6.9482 0.5171 27 7 2.7647 3.3203 -0.7274 28 7 2.3886 2.1445 -1.0829 29 6 2.3466 1.6603 -2.4650 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0234 1.9529 2.1179 36 1 3.5844 5.7617 -0.2075 37 1 1.8522 7.1632 2.3489 38 1 2.8355 8.6468 2.3843 39 1 2.1461 8.0725 0.8472 40 1 4.3208 9.5947 1.8004 41 1 5.6745 8.7046 2.5371 42 1 6.4603 10.7720 1.3866 43 1 5.7725 10.1696 -0.1413 44 1 7.9845 8.8565 1.5041 45 1 8.1638 9.6406 -0.0851 46 1 8.1156 4.8065 -3.0974 47 1 5.8806 6.1197 -0.1504 48 1 6.4991 6.5593 1.4610 49 1 1.3708 1.8809 -2.8978 50 1 3.1229 2.1565 -3.0476 51 1 2.5148 0.5835 -2.4781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025633681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:54 Heat of formation + Delta-G solvation = 51.730471 kcal Electronic energy + Delta-G solvation = -30210.941102 eV Core-core repulsion = 26340.282327 eV Total energy + Delta-G solvation = -3870.658776 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.71193 -39.56057 -37.96660 -35.19526 -34.63004 -33.46231 -33.01021 -31.38410 -30.48428 -29.44733 -28.88777 -27.46229 -25.25130 -24.13222 -23.76485 -22.81264 -22.18614 -20.87425 -20.26787 -19.74692 -19.05202 -17.29783 -16.76688 -16.46917 -16.35961 -15.71264 -15.36138 -14.83087 -14.60092 -14.32647 -14.14208 -13.87200 -13.70719 -13.55447 -13.42521 -13.24195 -13.01957 -12.82529 -12.76576 -12.69739 -12.56445 -12.23906 -12.07409 -11.89543 -11.54336 -11.44390 -11.31871 -11.17046 -10.75663 -10.70283 -10.45921 -10.36446 -10.04982 -9.95551 -9.75563 -9.62126 -9.38381 -9.14650 -8.96728 -8.73290 -8.56316 -6.92599 -5.93135 -3.27700 1.67290 2.08442 2.40302 3.38717 3.41517 3.52335 3.56732 3.63796 4.27788 4.33382 4.56252 4.59939 4.80132 4.83268 4.90325 4.95872 5.13326 5.23102 5.23917 5.24800 5.28065 5.37922 5.43754 5.46078 5.54767 5.55324 5.63085 5.68680 5.73215 5.81776 5.91702 5.95824 6.03194 6.09512 6.15706 6.22571 6.35472 6.38102 6.40087 6.41846 6.63880 6.67016 6.70543 6.71526 6.77359 6.85859 7.03801 7.70045 7.98936 8.00765 8.35182 8.46067 8.97798 9.75594 10.14488 11.22658 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.004014 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.213321 B = 6973.942339 C = 8538.823287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.007 3.993 4 C -0.177 4.177 5 C -0.015 4.015 6 C 0.606 3.394 7 O -0.541 6.541 8 N -0.707 5.707 9 C 0.145 3.855 10 H 0.086 0.914 11 C -0.160 4.160 12 C -0.112 4.112 13 H 0.078 0.922 14 C -0.102 4.102 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.258 4.258 19 H 0.086 0.914 20 C 0.027 3.973 21 N -0.908 5.908 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.306 1.306 25 H -0.272 1.272 26 C 0.135 3.865 27 N -0.253 5.253 28 N -0.280 5.280 29 C 0.083 3.917 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.409 0.591 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.261 0.739 47 H 0.073 0.927 48 H 0.023 0.977 49 H 0.084 0.916 50 H 0.101 0.899 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -7.290 4.520 18.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.116 4.116 4 C -0.205 4.205 5 C -0.175 4.175 6 C 0.391 3.609 7 O -0.417 6.417 8 N -0.357 5.357 9 C 0.041 3.959 10 H 0.104 0.896 11 C -0.218 4.218 12 C -0.133 4.133 13 H 0.097 0.903 14 C -0.141 4.141 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.386 4.386 19 H 0.103 0.897 20 C -0.172 4.172 21 N -0.551 5.551 22 Si 0.708 3.292 23 H -0.212 1.212 24 H -0.234 1.234 25 H -0.198 1.198 26 C 0.009 3.991 27 N -0.089 5.089 28 N -0.068 5.068 29 C -0.057 4.057 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.041 0.959 49 H 0.103 0.897 50 H 0.119 0.881 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.686 -6.853 4.148 17.613 hybrid contribution -0.112 -1.349 0.736 1.541 sum -15.797 -8.202 4.884 18.458 Atomic orbital electron populations 1.21757 0.94061 1.02052 1.02605 1.20095 0.96370 0.88829 1.03815 1.21359 1.06354 0.96961 0.86976 1.21449 1.07135 0.92441 0.99505 1.21920 1.08597 0.97041 0.89935 1.16861 0.76743 0.81069 0.86259 1.90748 1.54673 1.83193 1.13102 1.45974 1.65436 1.12675 1.11648 1.21081 0.94895 0.84367 0.95576 0.89560 1.22195 0.97739 1.00035 1.01851 1.21977 0.96285 0.96050 0.98943 0.90332 1.21504 0.98697 0.95618 0.98235 1.22047 0.97912 0.97562 0.99829 1.20949 0.93905 0.87428 0.95725 1.44350 1.42563 1.20623 1.25385 1.18926 1.34054 0.92130 0.93523 0.89685 1.25225 0.99189 0.96927 0.95862 1.69834 1.52795 1.16574 1.15906 0.87040 0.76909 0.81727 0.83564 1.21211 1.23428 1.19755 1.21329 0.87635 0.93468 0.96650 1.73625 1.17557 1.02662 1.15008 1.45324 1.45479 1.08116 1.07881 1.22185 1.04961 1.00991 0.77556 0.91922 0.92768 0.91820 0.90739 0.89191 0.82253 0.75555 0.92464 0.91282 0.92511 0.92429 0.92421 0.92619 0.91990 0.96112 0.92040 0.92934 0.90940 0.95914 0.89718 0.88059 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.90 37.16 0.37 -0.58 16 2 C -0.05 -0.40 6.21 -27.88 -0.17 -0.57 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.59 10.73 -39.37 -0.42 -3.01 16 5 C -0.01 -0.26 7.13 -82.77 -0.59 -0.85 16 6 C 0.61 11.38 7.79 -12.39 -0.10 11.28 16 7 O -0.54 -11.05 16.59 5.30 0.09 -10.96 16 8 N -0.71 -12.61 4.47 -54.79 -0.25 -12.85 16 9 C 0.15 2.42 2.16 -67.93 -0.15 2.27 16 10 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 11 C -0.16 -2.21 9.14 37.15 0.34 -1.87 16 12 C -0.11 -1.99 1.97 -90.50 -0.18 -2.17 16 13 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 14 C -0.10 -1.59 4.86 -26.53 -0.13 -1.72 16 15 C -0.13 -2.19 6.11 -26.45 -0.16 -2.35 16 16 C 0.15 2.92 6.50 -3.71 -0.02 2.90 16 17 N -0.61 -14.67 2.77 -172.33 -0.48 -15.15 16 18 C -0.26 -7.31 10.03 -15.06 -0.15 -7.46 16 19 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 20 C 0.03 0.79 5.23 -17.44 -0.09 0.70 16 21 N -0.91 -28.00 13.97 55.49 0.78 -27.23 16 22 Si 0.88 23.48 24.35 -169.99 -4.14 19.34 16 23 H -0.28 -7.52 6.62 56.52 0.37 -7.14 16 24 H -0.31 -8.33 7.11 56.52 0.40 -7.93 16 25 H -0.27 -7.31 6.64 56.52 0.38 -6.94 16 26 C 0.13 3.03 3.25 -3.71 -0.01 3.02 16 27 N -0.25 -4.24 11.67 33.42 0.39 -3.85 16 28 N -0.28 -3.67 3.70 -63.85 -0.24 -3.90 16 29 C 0.08 0.70 11.11 59.85 0.66 1.36 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.44 6.86 -51.93 -0.36 0.08 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.41 7.35 8.14 -40.82 -0.33 7.02 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.84 6.40 -51.93 -0.33 0.50 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.76 6.36 -51.93 -0.33 0.43 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.07 1.79 4.01 -51.93 -0.21 1.58 16 48 H 0.02 0.54 7.07 -51.93 -0.37 0.17 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.09 0.52 6.88 -51.93 -0.36 0.16 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -35.45 397.66 -7.78 -43.23 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.62 Total: 4.85 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: 0.21 Total: -62.98 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.14 Total: 19.34 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.45 -7.78 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025633681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.963 kcal (2) G-P(sol) polarization free energy of solvation -35.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds