Wall clock time and date at job start Tue Mar 31 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50691 * 109.47277 * 2 1 4 4 C 1.35360 * 126.38779 * 84.97316 * 3 2 1 5 5 C 1.41503 * 105.50811 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.52217 * 180.02562 * 5 4 3 7 7 O 1.21577 * 119.99817 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00141 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99940 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46808 * 35.00076 * 9 8 6 11 11 C 1.52993 * 109.47406 * 274.99753 * 9 8 6 12 12 C 1.53007 * 109.46856 * 154.99473 * 9 8 6 13 13 H 1.09002 * 109.51963 * 60.08828 * 12 9 8 14 14 C 1.53042 * 109.49559 * 180.15883 * 12 9 8 15 15 C 1.53351 * 109.60803 * 181.32703 * 14 12 9 16 16 C 1.53189 * 109.14968 * 298.71733 * 15 14 12 17 17 N 1.46925 * 108.89498 * 54.57615 * 16 15 14 18 18 C 1.36933 * 120.63376 * 126.34355 * 17 16 15 19 19 H 1.08007 * 119.99785 * 332.55589 * 18 17 16 20 20 C 1.38811 * 120.00685 * 152.55685 * 18 17 16 21 21 N 1.31606 * 120.00547 * 159.32495 * 20 18 17 22 22 Si 1.86806 * 119.99505 * 339.32413 * 20 18 17 23 23 H 1.48501 * 109.46946 * 92.92636 * 22 20 18 24 24 H 1.48496 * 109.46962 * 212.93106 * 22 20 18 25 25 H 1.48503 * 109.47163 * 332.92869 * 22 20 18 26 26 C 1.46930 * 118.73896 * 306.32231 * 17 16 15 27 27 N 1.31805 * 106.96222 * 0.26747 * 5 4 3 28 28 N 1.28471 * 110.06865 * 359.55558 * 27 5 4 29 29 C 1.46507 * 124.88295 * 180.20503 * 28 27 5 30 30 H 1.09002 * 109.46618 * 299.99808 * 1 2 3 31 31 H 1.08995 * 109.46856 * 59.99644 * 1 2 3 32 32 H 1.08995 * 109.47060 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47065 * 239.99910 * 2 1 3 34 34 H 1.08995 * 109.46856 * 120.00356 * 2 1 3 35 35 H 1.08010 * 127.24875 * 0.02626 * 4 3 2 36 36 H 0.96999 * 120.00337 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46963 * 59.99882 * 11 9 8 38 38 H 1.08998 * 109.47324 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.47004 * 300.00318 * 11 9 8 40 40 H 1.08996 * 109.46308 * 301.34320 * 14 12 9 41 41 H 1.09001 * 109.45926 * 61.31229 * 14 12 9 42 42 H 1.09002 * 109.68043 * 178.74829 * 15 14 12 43 43 H 1.09001 * 109.46879 * 58.55420 * 15 14 12 44 44 H 1.08999 * 109.58425 * 294.71399 * 16 15 14 45 45 H 1.09000 * 109.58811 * 174.43590 * 16 15 14 46 46 H 0.96999 * 120.00524 * 180.02562 * 21 20 18 47 47 H 1.08992 * 109.58650 * 173.39595 * 26 17 16 48 48 H 1.09001 * 109.58325 * 293.67528 * 26 17 16 49 49 H 1.09000 * 109.47426 * 270.29083 * 29 28 27 50 50 H 1.09007 * 109.47076 * 30.28865 * 29 28 27 51 51 H 1.08999 * 109.47399 * 150.28580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2101 2.2096 1.0855 5 6 2.6919 3.4416 0.5830 6 6 3.0413 4.6379 1.3758 7 8 2.9238 4.6210 2.5857 8 7 3.4903 5.7483 0.7578 9 6 3.8373 6.9347 1.5442 10 1 4.2684 6.6260 2.4966 11 6 2.5772 7.7639 1.7996 12 6 4.8551 7.7778 0.7732 13 1 4.4243 8.0882 -0.1788 14 6 5.2210 9.0153 1.5958 15 6 6.2159 9.8791 0.8112 16 6 7.4915 9.0702 0.5558 17 7 7.1307 7.8095 -0.1070 18 6 7.7281 7.4440 -1.2837 19 1 8.1059 8.2008 -1.9553 20 6 7.8481 6.1010 -1.6134 21 7 8.0321 5.7450 -2.8670 22 14 7.7485 4.7989 -0.2776 23 1 6.3472 4.3234 -0.1534 24 1 8.6291 3.6572 -0.6327 25 1 8.1901 5.3811 1.0152 26 6 6.1171 6.9482 0.5171 27 7 2.7647 3.3203 -0.7274 28 7 2.3886 2.1445 -1.0829 29 6 2.3466 1.6603 -2.4650 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0234 1.9529 2.1179 36 1 3.5844 5.7617 -0.2075 37 1 1.8522 7.1632 2.3489 38 1 2.8355 8.6468 2.3843 39 1 2.1461 8.0725 0.8472 40 1 4.3208 9.5947 1.8004 41 1 5.6745 8.7046 2.5371 42 1 6.4603 10.7720 1.3866 43 1 5.7725 10.1696 -0.1413 44 1 7.9845 8.8565 1.5041 45 1 8.1638 9.6406 -0.0851 46 1 8.1156 4.8065 -3.0974 47 1 5.8806 6.1197 -0.1504 48 1 6.4991 6.5593 1.4610 49 1 1.3708 1.8809 -2.8978 50 1 3.1229 2.1565 -3.0476 51 1 2.5148 0.5835 -2.4781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025633681.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:49 Heat of formation + Delta-G solvation = 27.419202 kcal Electronic energy + Delta-G solvation = -30211.995318 eV Core-core repulsion = 26340.282327 eV Total energy + Delta-G solvation = -3871.712992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.77421 -40.98984 -39.53169 -36.76562 -35.41631 -34.84260 -34.39720 -33.09087 -32.16412 -30.44789 -30.20691 -28.43265 -27.09736 -25.36036 -24.57668 -24.31036 -23.74364 -22.00986 -21.68941 -21.17495 -20.39033 -18.84093 -18.32883 -17.70474 -17.44914 -17.22921 -16.97806 -16.09871 -15.86268 -15.56690 -15.49213 -15.33438 -15.11886 -14.86287 -14.73865 -14.56513 -14.24260 -14.13123 -13.89716 -13.79336 -13.62581 -13.51153 -13.36712 -13.22145 -12.79529 -12.71207 -12.57707 -12.52159 -12.14501 -12.06448 -11.96436 -11.76140 -11.71913 -11.58587 -11.43913 -11.26030 -11.14552 -10.69348 -10.33517 -10.03840 -9.99610 -8.94938 -8.22900 -5.51290 0.44211 1.04741 1.21573 1.29365 1.36437 1.50362 2.11689 2.29328 2.32451 2.98147 3.25918 3.29775 3.55490 3.72948 3.85754 3.90886 3.96968 4.06084 4.25859 4.26651 4.33339 4.38849 4.40027 4.43382 4.46830 4.47850 4.58504 4.60011 4.66191 4.69669 4.77311 4.78963 4.84947 4.97157 4.97850 5.03983 5.09072 5.14257 5.16826 5.21460 5.23806 5.26593 5.35548 5.40557 5.47486 5.59581 5.82531 5.83871 6.08772 6.33170 6.81685 6.88526 7.06715 7.59263 8.01333 8.96957 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.004014 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.213321 B = 6973.942339 C = 8538.823287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C 0.027 3.973 4 C -0.201 4.201 5 C -0.049 4.049 6 C 0.601 3.399 7 O -0.567 6.567 8 N -0.709 5.709 9 C 0.146 3.854 10 H 0.073 0.927 11 C -0.149 4.149 12 C -0.099 4.099 13 H 0.074 0.926 14 C -0.100 4.100 15 C -0.124 4.124 16 C 0.136 3.864 17 N -0.620 5.620 18 C -0.242 4.242 19 H 0.061 0.939 20 C -0.019 4.019 21 N -0.948 5.948 22 Si 0.934 3.066 23 H -0.287 1.287 24 H -0.312 1.312 25 H -0.274 1.274 26 C 0.135 3.865 27 N -0.285 5.285 28 N -0.277 5.277 29 C 0.070 3.930 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.165 0.835 36 H 0.406 0.594 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.029 0.971 45 H 0.056 0.944 46 H 0.260 0.740 47 H 0.045 0.955 48 H 0.012 0.988 49 H 0.108 0.892 50 H 0.090 0.910 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.841 -7.521 5.444 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.099 4.099 4 C -0.229 4.229 5 C -0.207 4.207 6 C 0.387 3.613 7 O -0.445 6.445 8 N -0.358 5.358 9 C 0.042 3.958 10 H 0.091 0.909 11 C -0.207 4.207 12 C -0.120 4.120 13 H 0.093 0.907 14 C -0.137 4.137 15 C -0.163 4.163 16 C 0.011 3.989 17 N -0.345 5.345 18 C -0.372 4.372 19 H 0.079 0.921 20 C -0.215 4.215 21 N -0.594 5.594 22 Si 0.765 3.235 23 H -0.214 1.214 24 H -0.241 1.241 25 H -0.200 1.200 26 C 0.010 3.990 27 N -0.122 5.122 28 N -0.066 5.066 29 C -0.068 4.068 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.183 0.817 36 H 0.241 0.759 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.063 0.937 48 H 0.030 0.970 49 H 0.126 0.874 50 H 0.109 0.891 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.563 -7.044 5.095 19.597 hybrid contribution 0.483 -1.269 0.382 1.411 sum -17.079 -8.313 5.478 19.769 Atomic orbital electron populations 1.21736 0.92986 1.03369 1.02015 1.20323 0.97092 0.85872 1.05625 1.22000 1.03868 0.98280 0.85708 1.21683 1.08302 0.92186 1.00757 1.21933 1.10616 0.97587 0.90603 1.17152 0.76356 0.81641 0.86190 1.90705 1.56039 1.83768 1.14027 1.46078 1.65118 1.13076 1.11534 1.21146 0.96038 0.84203 0.94443 0.90884 1.22113 0.95819 1.00147 1.02619 1.21817 0.93964 0.96549 0.99621 0.90742 1.21552 1.00135 0.94471 0.97589 1.21951 0.95713 0.98215 1.00373 1.21215 0.96258 0.85979 0.95422 1.44530 1.43106 1.22143 1.24674 1.18927 1.32436 0.91430 0.94398 0.92149 1.25648 1.00356 0.98497 0.96986 1.69918 1.55455 1.16785 1.17278 0.86128 0.76352 0.79634 0.81354 1.21432 1.24140 1.19959 1.21254 0.89339 0.93412 0.95015 1.73549 1.19042 1.04798 1.14833 1.45813 1.43869 1.07190 1.09715 1.22631 1.06041 1.02876 0.75246 0.93106 0.92845 0.89517 0.88191 0.88108 0.81738 0.75902 0.93214 0.88733 0.91643 0.88749 0.91899 0.88893 0.92584 0.95305 0.92541 0.93046 0.93681 0.97024 0.87353 0.89113 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.90 71.98 0.71 -0.74 16 2 C -0.05 -0.62 6.21 29.85 0.19 -0.43 16 3 C 0.03 0.60 6.17 41.40 0.26 0.86 16 4 C -0.20 -5.93 10.73 22.41 0.24 -5.69 16 5 C -0.05 -1.76 7.13 42.46 0.30 -1.46 16 6 C 0.60 23.30 7.79 86.75 0.68 23.98 16 7 O -0.57 -23.82 16.59 -3.96 -0.07 -23.88 16 8 N -0.71 -25.82 4.47 -445.52 -1.99 -27.81 16 9 C 0.15 4.75 2.16 44.99 0.10 4.85 16 10 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 11 C -0.15 -3.79 9.14 71.98 0.66 -3.14 16 12 C -0.10 -3.40 1.97 -10.72 -0.02 -3.42 16 13 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 14 C -0.10 -2.76 4.86 30.73 0.15 -2.61 16 15 C -0.12 -3.64 6.11 30.78 0.19 -3.45 16 16 C 0.14 5.25 6.50 86.36 0.56 5.81 16 17 N -0.62 -30.06 2.77 -699.12 -1.94 -32.00 16 18 C -0.24 -14.01 10.03 84.03 0.84 -13.17 16 19 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 20 C -0.02 -1.17 5.23 84.86 0.44 -0.73 16 21 N -0.95 -60.24 13.97 21.65 0.30 -59.94 16 22 Si 0.93 50.50 24.35 68.60 1.67 52.17 16 23 H -0.29 -15.43 6.62 99.48 0.66 -14.77 16 24 H -0.31 -17.02 7.11 99.48 0.71 -16.32 16 25 H -0.27 -14.69 6.64 99.48 0.66 -14.03 16 26 C 0.13 6.08 3.25 86.36 0.28 6.36 16 27 N -0.29 -9.74 11.67 -48.18 -0.56 -10.30 16 28 N -0.28 -7.03 3.70 -355.92 -1.32 -8.35 16 29 C 0.07 1.04 11.11 127.77 1.42 2.46 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.75 6.86 -2.39 -0.02 0.73 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.17 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.41 15.15 8.14 -92.71 -0.75 14.39 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 1.92 6.40 -2.39 -0.02 1.90 16 39 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.09 2.00 6.36 -2.39 -0.02 1.99 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 2.20 7.93 -2.39 -0.02 2.19 16 46 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 47 H 0.05 2.28 4.01 -2.39 -0.01 2.27 16 48 H 0.01 0.56 7.07 -2.39 -0.02 0.54 16 49 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 51 H 0.13 0.98 6.88 -2.39 -0.02 0.96 16 Total: -1.00 -80.75 397.66 3.16 -77.58 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.07 Total: 23.06 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 6.99 Total: 9.48 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -5.51 Total: -138.40 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.07 Total: -23.88 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 1.67 Total: 52.17 kcal Total: -80.75 3.16 -77.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025633681.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.003 kcal (2) G-P(sol) polarization free energy of solvation -80.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds