Wall clock time and date at job start Tue Mar 31 2020 18:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50704 * 109.47400 * 2 1 4 4 C 1.35362 * 126.38570 * 85.02439 * 3 2 1 5 5 C 1.41501 * 105.50605 * 180.02562 * 4 3 2 6 6 C 1.47702 * 126.52172 * 179.73368 * 5 4 3 7 7 O 1.21570 * 119.99988 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00212 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00259 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.46658 * 324.99938 * 9 8 6 11 11 C 1.52994 * 109.47066 * 85.00073 * 9 8 6 12 12 C 1.52998 * 109.47128 * 205.00227 * 9 8 6 13 13 H 1.08998 * 109.49989 * 300.06369 * 12 9 8 14 14 C 1.53042 * 109.49588 * 179.97438 * 12 9 8 15 15 C 1.53046 * 109.53660 * 178.68193 * 14 12 9 16 16 C 1.53191 * 109.30817 * 61.36879 * 15 14 12 17 17 N 1.46921 * 108.78056 * 305.36039 * 16 15 14 18 18 C 1.36933 * 120.63687 * 233.59147 * 17 16 15 19 19 H 1.08000 * 120.00684 * 151.82270 * 18 17 16 20 20 C 1.38818 * 119.99614 * 331.83039 * 18 17 16 21 21 N 1.31618 * 120.00036 * 343.07908 * 20 18 17 22 22 Si 1.86800 * 119.99778 * 163.08745 * 20 18 17 23 23 H 1.48491 * 109.47499 * 59.99379 * 22 20 18 24 24 H 1.48497 * 109.47139 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46857 * 299.99328 * 22 20 18 26 26 C 1.46925 * 118.73462 * 53.60971 * 17 16 15 27 27 N 1.31818 * 106.96022 * 359.97438 * 5 4 3 28 28 N 1.28472 * 110.07011 * 359.97438 * 27 5 4 29 29 C 1.46505 * 124.87703 * 179.97438 * 28 27 5 30 30 H 1.08994 * 109.46508 * 59.99879 * 1 2 3 31 31 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46623 * 300.00162 * 1 2 3 33 33 H 1.09002 * 109.47079 * 239.99583 * 2 1 3 34 34 H 1.09001 * 109.46868 * 120.00199 * 2 1 3 35 35 H 1.08006 * 127.24654 * 359.97438 * 4 3 2 36 36 H 0.97002 * 120.00033 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47111 * 179.97438 * 11 9 8 38 38 H 1.09000 * 109.47112 * 300.00117 * 11 9 8 39 39 H 1.09000 * 109.47017 * 60.00525 * 11 9 8 40 40 H 1.08998 * 109.46097 * 298.70338 * 14 12 9 41 41 H 1.09001 * 109.45841 * 58.67892 * 14 12 9 42 42 H 1.09001 * 109.49413 * 181.31627 * 15 14 12 43 43 H 1.08993 * 109.49826 * 301.38638 * 15 14 12 44 44 H 1.09000 * 109.58880 * 65.15215 * 16 15 14 45 45 H 1.09009 * 109.58530 * 185.57413 * 16 15 14 46 46 H 0.97001 * 119.99947 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.58677 * 186.60371 * 26 17 16 48 48 H 1.09005 * 109.58698 * 66.18300 * 26 17 16 49 49 H 1.09000 * 109.46933 * 270.00050 * 29 28 27 50 50 H 1.08997 * 109.47319 * 30.00418 * 29 28 27 51 51 H 1.09006 * 109.46647 * 150.00432 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2110 2.2094 1.0856 5 6 2.6925 3.4415 0.5831 6 6 3.0368 4.6395 1.3754 7 8 2.9150 4.6241 2.5849 8 7 3.4870 5.7495 0.7576 9 6 3.8291 6.9376 1.5434 10 1 3.1490 7.0207 2.3911 11 6 5.2666 6.8156 2.0529 12 6 3.7035 8.1838 0.6647 13 1 4.3826 8.1007 -0.1838 14 6 4.0602 9.4254 1.4853 15 6 3.9666 10.6693 0.5985 16 6 2.5296 10.8220 0.0901 17 7 2.1282 9.5751 -0.5752 18 6 1.6369 9.5930 -1.8532 19 1 1.7660 8.7330 -2.4936 20 6 0.9728 10.7167 -2.3258 21 7 0.5209 11.6183 -1.4801 22 14 0.7204 10.9490 -4.1620 23 1 -0.0690 9.8126 -4.7009 24 1 -0.0100 12.2190 -4.4045 25 1 2.0404 11.0006 -4.8405 26 6 2.2635 8.3085 0.1571 27 7 2.7702 3.3184 -0.7270 28 7 2.3892 2.1442 -1.0829 29 6 2.3459 1.6607 -2.4651 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0245 1.9525 2.1180 36 1 3.5846 5.7617 -0.2075 37 1 5.5213 7.6998 2.6372 38 1 5.3561 5.9278 2.6789 39 1 5.9467 6.7326 1.2051 40 1 3.3653 9.5212 2.3196 41 1 5.0761 9.3282 1.8681 42 1 4.2434 11.5504 1.1773 43 1 4.6435 10.5634 -0.2492 44 1 1.8637 11.0186 0.9304 45 1 2.4790 11.6477 -0.6198 46 1 0.0573 12.4037 -1.8104 47 1 2.0373 7.4756 -0.5086 48 1 1.5759 8.3001 1.0029 49 1 1.3695 1.8810 -2.8967 50 1 3.1214 2.1572 -3.0483 51 1 2.5145 0.5838 -2.4787 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025633682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:02 Heat of formation + Delta-G solvation = 24.678791 kcal Electronic energy + Delta-G solvation = -29497.887333 eV Core-core repulsion = 25626.055508 eV Total energy + Delta-G solvation = -3871.831825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.70594 -40.87851 -39.34479 -36.71799 -35.36495 -34.67741 -34.31768 -32.60130 -32.11412 -30.30678 -29.93551 -28.35945 -27.12654 -25.35020 -24.53284 -23.90611 -23.59471 -22.00695 -21.70224 -21.07641 -20.21174 -18.72298 -18.17942 -17.54074 -17.30333 -17.02730 -16.77721 -15.94236 -15.88230 -15.45196 -15.39498 -15.23441 -14.96418 -14.78212 -14.68775 -14.21665 -14.14338 -14.03980 -13.81077 -13.61920 -13.43990 -13.29335 -13.19717 -13.02511 -12.76364 -12.61886 -12.50075 -12.31866 -12.23056 -12.03268 -11.98953 -11.78600 -11.70551 -11.52067 -11.38535 -11.14847 -10.99888 -10.54041 -10.26003 -9.96028 -9.93206 -8.68412 -7.87876 -5.34459 0.51632 1.10406 1.44722 1.47557 1.54567 1.56199 2.18530 2.37208 2.49795 3.25837 3.32808 3.53363 3.61030 3.89277 3.95072 4.00525 4.05688 4.12315 4.30989 4.34966 4.42054 4.43518 4.46757 4.51339 4.54146 4.62966 4.65034 4.71158 4.76213 4.81441 4.85766 4.87004 4.93873 5.05164 5.06019 5.10284 5.18302 5.23907 5.26346 5.32067 5.33262 5.38411 5.45611 5.51906 5.57108 5.66104 5.78031 5.87657 6.37375 6.44746 6.89588 7.13821 7.16476 7.84729 8.37426 9.18065 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.003169 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.046772 B = 8834.161771 C =10737.416662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.049 4.049 3 C 0.026 3.974 4 C -0.203 4.203 5 C -0.043 4.043 6 C 0.602 3.398 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.153 3.847 10 H 0.068 0.932 11 C -0.152 4.152 12 C -0.093 4.093 13 H 0.076 0.924 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.173 3.827 17 N -0.608 5.608 18 C -0.265 4.265 19 H 0.065 0.935 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.275 1.275 26 C 0.157 3.843 27 N -0.278 5.278 28 N -0.276 5.276 29 C 0.071 3.929 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.161 0.839 36 H 0.409 0.591 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.055 0.945 44 H -0.010 1.010 45 H 0.053 0.947 46 H 0.250 0.750 47 H 0.045 0.955 48 H -0.004 1.004 49 H 0.096 0.904 50 H 0.101 0.899 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.515 -24.202 0.702 25.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.100 4.100 4 C -0.231 4.231 5 C -0.201 4.201 6 C 0.387 3.613 7 O -0.450 6.450 8 N -0.352 5.352 9 C 0.049 3.951 10 H 0.087 0.913 11 C -0.210 4.210 12 C -0.113 4.113 13 H 0.094 0.906 14 C -0.135 4.135 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.331 5.331 18 C -0.396 4.396 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.219 1.219 25 H -0.201 1.201 26 C 0.031 3.969 27 N -0.115 5.115 28 N -0.065 5.065 29 C -0.067 4.067 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.178 0.822 36 H 0.245 0.755 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.008 0.992 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.014 0.986 49 H 0.114 0.886 50 H 0.120 0.880 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.633 -23.494 0.406 24.707 hybrid contribution -0.939 0.410 -0.522 1.150 sum 6.693 -23.085 -0.116 24.036 Atomic orbital electron populations 1.21762 0.93773 1.03247 1.01769 1.20295 0.96442 0.86194 1.05791 1.21923 1.04008 0.98217 0.85802 1.21675 1.08338 0.92416 1.00681 1.21824 1.10686 0.97056 0.90561 1.17149 0.76117 0.81885 0.86111 1.90728 1.56017 1.83673 1.14547 1.45944 1.65296 1.12378 1.11544 1.20991 0.97610 0.82939 0.93602 0.91339 1.22125 0.94463 1.02708 1.01676 1.21731 0.97758 0.93763 0.98073 0.90551 1.21450 1.02026 0.92930 0.97068 1.22006 0.97563 0.98172 0.99120 1.20655 0.91481 0.88974 0.94172 1.44296 1.73562 1.02164 1.13093 1.19475 1.29151 1.01820 0.89105 0.91776 1.25835 0.97727 0.99080 1.01984 1.70199 1.40740 1.12843 1.34390 0.85323 0.77855 0.76800 0.80367 1.20216 1.21943 1.20099 1.20921 0.94031 0.88297 0.93649 1.73509 1.19348 1.04294 1.14391 1.45793 1.43854 1.07253 1.09561 1.22626 1.05889 1.03012 0.75201 0.93172 0.89563 0.93480 0.87860 0.87942 0.82186 0.75499 0.89528 0.93189 0.91427 0.92966 0.89158 0.90935 0.92661 0.99152 0.92887 0.94091 0.93692 0.98601 0.88564 0.88002 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.90 71.98 0.71 -0.71 16 2 C -0.05 -0.45 6.21 29.85 0.19 -0.26 16 3 C 0.03 0.48 6.17 41.40 0.26 0.74 16 4 C -0.20 -5.25 10.73 22.41 0.24 -5.00 16 5 C -0.04 -1.33 7.13 42.45 0.30 -1.02 16 6 C 0.60 20.82 7.79 86.74 0.68 21.50 16 7 O -0.57 -22.64 16.59 -3.94 -0.07 -22.71 16 8 N -0.70 -22.30 4.47 -445.55 -1.99 -24.29 16 9 C 0.15 4.76 2.16 44.99 0.10 4.86 16 10 H 0.07 2.42 7.58 -2.39 -0.02 2.40 16 11 C -0.15 -3.82 9.13 71.98 0.66 -3.17 16 12 C -0.09 -3.17 1.97 -10.71 -0.02 -3.19 16 13 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 14 C -0.10 -3.12 4.85 30.62 0.15 -2.97 16 15 C -0.13 -4.86 6.08 30.67 0.19 -4.68 16 16 C 0.17 8.64 5.30 86.36 0.46 9.09 16 17 N -0.61 -31.85 2.99 -699.08 -2.09 -33.94 16 18 C -0.27 -15.09 9.58 84.04 0.81 -14.29 16 19 H 0.06 3.55 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.92 4.92 84.86 0.42 -2.50 16 21 N -0.94 -56.96 11.20 21.65 0.24 -56.72 16 22 Si 0.97 45.65 29.59 68.60 2.03 47.68 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 C 0.16 6.97 5.56 86.36 0.48 7.45 16 27 N -0.28 -7.74 11.67 -48.18 -0.56 -8.30 16 28 N -0.28 -5.53 3.70 -355.91 -1.32 -6.85 16 29 C 0.07 0.67 11.11 127.77 1.42 2.09 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.38 6.87 -2.39 -0.02 0.37 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.16 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.41 12.49 8.15 -92.71 -0.76 11.74 16 37 H 0.09 1.88 6.40 -2.39 -0.02 1.87 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.09 2.28 6.36 -2.39 -0.02 2.26 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 43 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.05 2.98 6.06 -2.38 -0.01 2.96 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.04 2.01 7.45 -2.39 -0.02 1.99 16 48 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 49 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.13 0.27 6.88 -2.38 -0.02 0.25 16 Total: -1.00 -77.44 404.09 3.42 -74.02 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.16 Total: 23.18 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 7.02 Total: 7.94 kcal Atomic # 7 Polarization: -124.38 SS G_CDS: -5.72 Total: -130.10 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.07 Total: -22.71 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -77.44 3.42 -74.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025633682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.695 kcal (2) G-P(sol) polarization free energy of solvation -77.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds