Wall clock time and date at job start Tue Mar 31 2020 18:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47106 * 2 1 4 4 C 1.35370 * 126.38910 * 85.32185 * 3 2 1 5 5 C 1.41504 * 105.50504 * 180.14178 * 4 3 2 6 6 C 1.47703 * 126.51652 * 179.84869 * 5 4 3 7 7 O 1.21570 * 120.00455 * 359.71022 * 6 5 4 8 8 N 1.34783 * 119.99958 * 179.71318 * 6 5 4 9 9 C 1.46500 * 120.00104 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46637 * 324.99870 * 9 8 6 11 11 C 1.52998 * 109.47123 * 84.99760 * 9 8 6 12 12 C 1.52997 * 109.47164 * 204.99918 * 9 8 6 13 13 H 1.09009 * 109.49912 * 59.93097 * 12 9 8 14 14 C 1.53042 * 109.50152 * 179.97438 * 12 9 8 15 15 C 1.53037 * 109.54229 * 181.31687 * 14 12 9 16 16 C 1.53190 * 109.31246 * 298.63978 * 15 14 12 17 17 N 1.46925 * 108.89709 * 54.55689 * 16 15 14 18 18 C 1.36940 * 120.62942 * 126.46202 * 17 16 15 19 19 H 1.08000 * 119.99735 * 331.91206 * 18 17 16 20 20 C 1.38810 * 120.00075 * 151.91248 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.18463 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.18630 * 20 18 17 23 23 H 1.48509 * 109.47304 * 59.99932 * 22 20 18 24 24 H 1.48501 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47535 * 299.99868 * 22 20 18 26 26 C 1.46965 * 118.71895 * 306.64986 * 17 16 15 27 27 N 1.31814 * 106.96116 * 359.58199 * 5 4 3 28 28 N 1.28465 * 110.07548 * 0.26173 * 27 5 4 29 29 C 1.46500 * 124.88559 * 179.97438 * 28 27 5 30 30 H 1.08996 * 109.47289 * 60.00299 * 1 2 3 31 31 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47347 * 299.99915 * 1 2 3 33 33 H 1.09000 * 109.47347 * 240.00085 * 2 1 3 34 34 H 1.09006 * 109.47350 * 119.99839 * 2 1 3 35 35 H 1.08004 * 127.24516 * 359.97438 * 4 3 2 36 36 H 0.97001 * 119.99895 * 359.97438 * 8 6 5 37 37 H 1.09006 * 109.46918 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47352 * 299.99952 * 11 9 8 39 39 H 1.08997 * 109.46989 * 60.00234 * 11 9 8 40 40 H 1.09001 * 109.45542 * 61.29252 * 14 12 9 41 41 H 1.09002 * 109.45436 * 301.33772 * 14 12 9 42 42 H 1.08994 * 109.50050 * 178.68409 * 15 14 12 43 43 H 1.09002 * 109.52361 * 58.60193 * 15 14 12 44 44 H 1.09002 * 109.59153 * 174.42209 * 16 15 14 45 45 H 1.09005 * 109.58422 * 294.70394 * 16 15 14 46 46 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.46226 * 293.56853 * 26 17 16 48 48 H 1.08999 * 109.59625 * 173.21143 * 26 17 16 49 49 H 1.09004 * 109.46712 * 89.97904 * 29 28 27 50 50 H 1.08998 * 109.47064 * 209.97761 * 29 28 27 51 51 H 1.09002 * 109.46822 * 329.98104 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2162 2.2076 1.0861 5 6 2.6925 3.4414 0.5831 6 6 3.0419 4.6377 1.3758 7 8 2.9242 4.6209 2.5857 8 7 3.4913 5.7480 0.7579 9 6 3.8373 6.9348 1.5441 10 1 3.1601 7.0175 2.3942 11 6 5.2764 6.8105 2.0486 12 6 3.7101 8.1822 0.6675 13 1 2.6852 8.2705 0.3068 14 6 4.0708 9.4225 1.4883 15 6 3.9123 10.6738 0.6217 16 6 4.8693 10.5884 -0.5714 17 7 4.6295 9.3264 -1.2844 18 6 4.3742 9.3228 -2.6298 19 1 3.9077 10.1796 -3.0931 20 6 4.7149 8.2179 -3.3979 21 7 5.5633 7.3272 -2.9296 22 14 3.9696 7.9954 -5.0962 23 1 4.3332 9.1533 -5.9521 24 1 4.4919 6.7463 -5.7063 25 1 2.4915 7.9100 -4.9809 26 6 4.6649 8.0686 -0.5251 27 7 2.7706 3.3182 -0.7270 28 7 2.3887 2.1444 -1.0830 29 6 2.3455 1.6607 -2.4652 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0347 1.9489 2.1189 36 1 3.5855 5.7614 -0.2074 37 1 5.5337 7.6933 2.6340 38 1 5.3670 5.9219 2.6731 39 1 5.9535 6.7278 1.1985 40 1 5.1034 9.3449 1.8287 41 1 3.4085 9.4920 2.3512 42 1 4.1468 11.5585 1.2137 43 1 2.8859 10.7393 0.2607 44 1 4.6910 11.4276 -1.2438 45 1 5.8995 10.6173 -0.2162 46 1 5.8017 6.5554 -3.4666 47 1 5.6783 7.8895 -0.1660 48 1 4.3516 7.2452 -1.1669 49 1 3.3002 1.2000 -2.7188 50 1 1.5482 0.9246 -2.5677 51 1 2.1560 2.4977 -3.1372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025633683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:14 Heat of formation + Delta-G solvation = 48.024768 kcal Electronic energy + Delta-G solvation = -30023.714606 eV Core-core repulsion = 26152.895138 eV Total energy + Delta-G solvation = -3870.819467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.65701 -39.41218 -37.77488 -34.93321 -34.59463 -33.40320 -32.99537 -31.21986 -29.86696 -29.37106 -28.20132 -27.34121 -25.25292 -24.26503 -23.78043 -22.70585 -22.05406 -20.83143 -20.22519 -19.28373 -18.49762 -17.19796 -16.75072 -16.32942 -16.21396 -15.55726 -14.85988 -14.76375 -14.44860 -14.31358 -14.04438 -13.86881 -13.62127 -13.53118 -13.39694 -13.07624 -12.96214 -12.72277 -12.57526 -12.41372 -12.27507 -12.08322 -11.86464 -11.66200 -11.45001 -11.41822 -10.99881 -10.80537 -10.67897 -10.55164 -10.40368 -10.14564 -10.06814 -9.87098 -9.74568 -9.46117 -9.33778 -9.08281 -8.92465 -8.56081 -8.44104 -6.62080 -5.77052 -3.19033 1.74377 2.13532 2.45366 3.37686 3.42477 3.44886 3.57745 3.72838 4.30802 4.37929 4.50262 4.65454 4.88974 4.93609 4.98724 5.17500 5.21512 5.25080 5.32524 5.36020 5.47038 5.53043 5.60725 5.65030 5.65788 5.68884 5.77429 5.84927 5.88123 5.95697 5.99372 6.15931 6.29633 6.36118 6.37684 6.45457 6.54155 6.55175 6.62917 6.74906 6.76219 6.86124 6.93443 7.02034 7.06916 7.38459 7.64798 7.80559 7.84339 8.12726 8.46682 8.60336 9.23460 9.86909 10.44552 11.31011 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.003885 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.410941 B = 7204.959620 C = 9352.686996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.005 3.995 4 C -0.178 4.178 5 C -0.014 4.014 6 C 0.603 3.397 7 O -0.547 6.547 8 N -0.703 5.703 9 C 0.153 3.847 10 H 0.079 0.921 11 C -0.165 4.165 12 C -0.123 4.123 13 H 0.068 0.932 14 C -0.101 4.101 15 C -0.134 4.134 16 C 0.144 3.856 17 N -0.592 5.592 18 C -0.252 4.252 19 H 0.063 0.937 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.177 3.823 27 N -0.250 5.250 28 N -0.281 5.281 29 C 0.084 3.916 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.413 0.587 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.025 0.975 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.259 -13.045 5.531 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.118 4.118 4 C -0.206 4.206 5 C -0.174 4.174 6 C 0.387 3.613 7 O -0.423 6.423 8 N -0.354 5.354 9 C 0.048 3.952 10 H 0.097 0.903 11 C -0.223 4.223 12 C -0.144 4.144 13 H 0.086 0.914 14 C -0.139 4.139 15 C -0.173 4.173 16 C 0.018 3.982 17 N -0.314 5.314 18 C -0.382 4.382 19 H 0.081 0.919 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.729 3.271 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.051 3.949 27 N -0.085 5.085 28 N -0.069 5.069 29 C -0.057 4.057 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.177 0.823 36 H 0.251 0.749 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.103 0.897 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.955 -12.622 5.169 15.311 hybrid contribution -0.489 -0.609 -0.828 1.139 sum -7.444 -13.231 4.341 15.790 Atomic orbital electron populations 1.21773 0.94148 1.02017 1.02693 1.20078 0.96325 0.88912 1.03736 1.21356 1.06565 0.96929 0.86995 1.21449 1.07267 0.92450 0.99407 1.21980 1.08580 0.96934 0.89895 1.16891 0.76840 0.81349 0.86228 1.90737 1.55352 1.83046 1.13190 1.46116 1.64730 1.12436 1.12120 1.20979 0.96318 0.83963 0.93916 0.90333 1.22262 0.96838 1.01522 1.01679 1.22131 1.02252 0.92166 0.97850 0.91396 1.21430 1.00795 0.94710 0.97004 1.21999 1.01014 0.96283 0.98007 1.20912 0.94900 0.90011 0.92376 1.44006 1.82384 1.00383 1.04651 1.19136 1.32783 1.02831 0.83461 0.91883 1.25000 0.97461 0.99399 0.97547 1.70013 1.32970 1.13703 1.37757 0.86419 0.79079 0.77123 0.84444 1.20965 1.21690 1.21134 1.20867 0.94386 0.90185 0.89420 1.73701 1.17439 1.02381 1.14999 1.45337 1.45519 1.08274 1.07776 1.22166 1.04023 1.01678 0.77788 0.92767 0.91856 0.91864 0.90811 0.89214 0.82332 0.74905 0.91690 0.92983 0.91234 0.92127 0.93481 0.93130 0.92524 0.93040 0.96541 0.93641 0.95665 0.89696 0.89655 0.88909 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.05 -0.38 6.00 -27.89 -0.17 -0.55 16 3 C 0.01 0.06 6.17 -82.21 -0.51 -0.44 16 4 C -0.18 -2.54 10.73 -39.36 -0.42 -2.96 16 5 C -0.01 -0.24 7.13 -82.77 -0.59 -0.83 16 6 C 0.60 11.34 7.79 -12.39 -0.10 11.24 16 7 O -0.55 -11.16 16.59 5.30 0.09 -11.07 16 8 N -0.70 -13.12 5.00 -54.79 -0.27 -13.39 16 9 C 0.15 2.73 2.41 -67.93 -0.16 2.57 16 10 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 11 C -0.16 -2.80 8.79 37.16 0.33 -2.47 16 12 C -0.12 -2.35 2.33 -90.50 -0.21 -2.57 16 13 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 14 C -0.10 -1.73 4.78 -26.69 -0.13 -1.85 16 15 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 16 C 0.14 3.04 6.51 -3.71 -0.02 3.02 16 17 N -0.59 -14.71 3.00 -172.29 -0.52 -15.23 16 18 C -0.25 -6.88 9.58 -15.06 -0.14 -7.03 16 19 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.00 0.13 4.92 -17.43 -0.09 0.04 16 21 N -0.90 -25.46 11.20 55.49 0.62 -24.84 16 22 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.18 4.09 4.08 -3.69 -0.02 4.07 16 27 N -0.25 -4.18 11.67 33.42 0.39 -3.79 16 28 N -0.28 -3.64 3.70 -63.85 -0.24 -3.88 16 29 C 0.08 0.71 10.89 59.85 0.65 1.36 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.42 7.42 -51.93 -0.39 0.03 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 36 H 0.41 8.20 6.70 -40.82 -0.27 7.93 16 37 H 0.06 0.99 6.46 -51.93 -0.34 0.66 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.28 6.32 -51.93 -0.33 0.95 16 40 H 0.06 1.01 6.50 -51.93 -0.34 0.68 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.03 0.62 6.17 -51.93 -0.32 0.30 16 48 H 0.08 2.17 4.66 -51.93 -0.24 1.93 16 49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.09 0.49 7.44 -51.93 -0.39 0.11 16 51 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 399.30 15.07 6.02 6.02 Total: -1.00 -32.63 399.30 -8.77 -41.40 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.46 Total: 7.85 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.37 Total: 0.49 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.02 Total: -61.13 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.63 -8.77 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025633683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.422 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds