Wall clock time and date at job start Tue Mar 31 2020 18:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47106 * 2 1 4 4 C 1.35370 * 126.38910 * 85.32185 * 3 2 1 5 5 C 1.41504 * 105.50504 * 180.14178 * 4 3 2 6 6 C 1.47703 * 126.51652 * 179.84869 * 5 4 3 7 7 O 1.21570 * 120.00455 * 359.71022 * 6 5 4 8 8 N 1.34783 * 119.99958 * 179.71318 * 6 5 4 9 9 C 1.46500 * 120.00104 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.46637 * 324.99870 * 9 8 6 11 11 C 1.52998 * 109.47123 * 84.99760 * 9 8 6 12 12 C 1.52997 * 109.47164 * 204.99918 * 9 8 6 13 13 H 1.09009 * 109.49912 * 59.93097 * 12 9 8 14 14 C 1.53042 * 109.50152 * 179.97438 * 12 9 8 15 15 C 1.53037 * 109.54229 * 181.31687 * 14 12 9 16 16 C 1.53190 * 109.31246 * 298.63978 * 15 14 12 17 17 N 1.46925 * 108.89709 * 54.55689 * 16 15 14 18 18 C 1.36940 * 120.62942 * 126.46202 * 17 16 15 19 19 H 1.08000 * 119.99735 * 331.91206 * 18 17 16 20 20 C 1.38810 * 120.00075 * 151.91248 * 18 17 16 21 21 N 1.31619 * 119.99689 * 343.18463 * 20 18 17 22 22 Si 1.86795 * 119.99988 * 163.18630 * 20 18 17 23 23 H 1.48509 * 109.47304 * 59.99932 * 22 20 18 24 24 H 1.48501 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47535 * 299.99868 * 22 20 18 26 26 C 1.46965 * 118.71895 * 306.64986 * 17 16 15 27 27 N 1.31814 * 106.96116 * 359.58199 * 5 4 3 28 28 N 1.28465 * 110.07548 * 0.26173 * 27 5 4 29 29 C 1.46500 * 124.88559 * 179.97438 * 28 27 5 30 30 H 1.08996 * 109.47289 * 60.00299 * 1 2 3 31 31 H 1.09002 * 109.46913 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47347 * 299.99915 * 1 2 3 33 33 H 1.09000 * 109.47347 * 240.00085 * 2 1 3 34 34 H 1.09006 * 109.47350 * 119.99839 * 2 1 3 35 35 H 1.08004 * 127.24516 * 359.97438 * 4 3 2 36 36 H 0.97001 * 119.99895 * 359.97438 * 8 6 5 37 37 H 1.09006 * 109.46918 * 180.02562 * 11 9 8 38 38 H 1.08994 * 109.47352 * 299.99952 * 11 9 8 39 39 H 1.08997 * 109.46989 * 60.00234 * 11 9 8 40 40 H 1.09001 * 109.45542 * 61.29252 * 14 12 9 41 41 H 1.09002 * 109.45436 * 301.33772 * 14 12 9 42 42 H 1.08994 * 109.50050 * 178.68409 * 15 14 12 43 43 H 1.09002 * 109.52361 * 58.60193 * 15 14 12 44 44 H 1.09002 * 109.59153 * 174.42209 * 16 15 14 45 45 H 1.09005 * 109.58422 * 294.70394 * 16 15 14 46 46 H 0.97000 * 119.99637 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.46226 * 293.56853 * 26 17 16 48 48 H 1.08999 * 109.59625 * 173.21143 * 26 17 16 49 49 H 1.09004 * 109.46712 * 89.97904 * 29 28 27 50 50 H 1.08998 * 109.47064 * 209.97761 * 29 28 27 51 51 H 1.09002 * 109.46822 * 329.98104 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2162 2.2076 1.0861 5 6 2.6925 3.4414 0.5831 6 6 3.0419 4.6377 1.3758 7 8 2.9242 4.6209 2.5857 8 7 3.4913 5.7480 0.7579 9 6 3.8373 6.9348 1.5441 10 1 3.1601 7.0175 2.3942 11 6 5.2764 6.8105 2.0486 12 6 3.7101 8.1822 0.6675 13 1 2.6852 8.2705 0.3068 14 6 4.0708 9.4225 1.4883 15 6 3.9123 10.6738 0.6217 16 6 4.8693 10.5884 -0.5714 17 7 4.6295 9.3264 -1.2844 18 6 4.3742 9.3228 -2.6298 19 1 3.9077 10.1796 -3.0931 20 6 4.7149 8.2179 -3.3979 21 7 5.5633 7.3272 -2.9296 22 14 3.9696 7.9954 -5.0962 23 1 4.3332 9.1533 -5.9521 24 1 4.4919 6.7463 -5.7063 25 1 2.4915 7.9100 -4.9809 26 6 4.6649 8.0686 -0.5251 27 7 2.7706 3.3182 -0.7270 28 7 2.3887 2.1444 -1.0830 29 6 2.3455 1.6607 -2.4652 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.0347 1.9489 2.1189 36 1 3.5855 5.7614 -0.2074 37 1 5.5337 7.6933 2.6340 38 1 5.3670 5.9219 2.6731 39 1 5.9535 6.7278 1.1985 40 1 5.1034 9.3449 1.8287 41 1 3.4085 9.4920 2.3512 42 1 4.1468 11.5585 1.2137 43 1 2.8859 10.7393 0.2607 44 1 4.6910 11.4276 -1.2438 45 1 5.8995 10.6173 -0.2162 46 1 5.8017 6.5554 -3.4666 47 1 5.6783 7.8895 -0.1660 48 1 4.3516 7.2452 -1.1669 49 1 3.3002 1.2000 -2.7188 50 1 1.5482 0.9246 -2.5677 51 1 2.1560 2.4977 -3.1372 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025633683.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:08 Heat of formation + Delta-G solvation = 27.764187 kcal Electronic energy + Delta-G solvation = -30024.593170 eV Core-core repulsion = 26152.895138 eV Total energy + Delta-G solvation = -3871.698032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.72160 -40.91281 -39.38066 -36.56835 -35.37661 -34.80108 -34.34614 -32.81297 -31.64628 -30.30344 -29.71178 -28.36133 -27.18858 -25.59001 -24.53376 -24.15910 -23.70126 -22.01316 -21.68042 -20.60877 -20.07776 -18.66437 -18.19526 -17.52489 -17.33140 -17.08877 -16.61696 -15.98790 -15.71353 -15.68462 -15.45424 -15.23091 -15.04346 -14.76791 -14.66446 -14.24283 -14.15298 -13.95344 -13.85487 -13.57693 -13.46788 -13.29578 -13.20558 -12.97512 -12.78514 -12.64884 -12.49629 -12.38137 -12.13691 -12.04817 -11.86496 -11.73960 -11.69121 -11.49251 -11.31089 -11.06144 -11.02692 -10.49481 -10.26867 -9.97408 -9.94427 -8.61710 -7.84213 -5.29318 0.50730 1.09858 1.45127 1.47008 1.53657 1.55185 2.21303 2.35302 2.51790 3.28517 3.32400 3.59740 3.61415 3.86910 3.96801 4.03354 4.14387 4.15487 4.28549 4.31825 4.38237 4.41575 4.46745 4.49491 4.52163 4.60396 4.64101 4.69336 4.75465 4.79251 4.85636 4.87547 5.00229 5.05681 5.05909 5.16910 5.17746 5.20224 5.28619 5.32272 5.38313 5.42304 5.46451 5.54215 5.57540 5.69023 5.81122 5.87588 6.41459 6.43461 6.88363 7.14284 7.18255 7.89808 8.41768 9.20697 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010554 B = 0.003885 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2652.410941 B = 7204.959620 C = 9352.686996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.026 3.974 4 C -0.198 4.198 5 C -0.046 4.046 6 C 0.601 3.399 7 O -0.569 6.569 8 N -0.706 5.706 9 C 0.156 3.844 10 H 0.085 0.915 11 C -0.155 4.155 12 C -0.109 4.109 13 H 0.053 0.947 14 C -0.099 4.099 15 C -0.123 4.123 16 C 0.137 3.863 17 N -0.612 5.612 18 C -0.267 4.267 19 H 0.061 0.939 20 C -0.042 4.042 21 N -0.925 5.925 22 Si 0.960 3.040 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.191 3.809 27 N -0.286 5.286 28 N -0.277 5.277 29 C 0.071 3.929 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.166 0.834 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.249 0.751 47 H 0.006 0.994 48 H 0.054 0.946 49 H 0.101 0.899 50 H 0.131 0.869 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -14.168 5.748 17.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.099 4.099 4 C -0.227 4.227 5 C -0.204 4.204 6 C 0.386 3.614 7 O -0.447 6.447 8 N -0.356 5.356 9 C 0.051 3.949 10 H 0.103 0.897 11 C -0.213 4.213 12 C -0.130 4.130 13 H 0.072 0.928 14 C -0.137 4.137 15 C -0.162 4.162 16 C 0.012 3.988 17 N -0.335 5.335 18 C -0.397 4.397 19 H 0.079 0.921 20 C -0.238 4.238 21 N -0.571 5.571 22 Si 0.788 3.212 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.065 3.935 27 N -0.123 5.123 28 N -0.066 5.066 29 C -0.067 4.067 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.184 0.816 36 H 0.242 0.758 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.072 0.928 49 H 0.119 0.881 50 H 0.150 0.850 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.150 -13.715 5.392 16.841 hybrid contribution -0.111 -0.292 -0.953 1.003 sum -8.260 -14.007 4.439 16.857 Atomic orbital electron populations 1.21762 0.93355 1.03343 1.01934 1.20305 0.96776 0.85937 1.05762 1.22003 1.03958 0.98259 0.85654 1.21676 1.08291 0.91975 1.00711 1.21909 1.10647 0.97361 0.90479 1.17176 0.76211 0.81777 0.86189 1.90696 1.56485 1.83581 1.13984 1.46189 1.64810 1.12900 1.11699 1.20998 0.96985 0.83275 0.93627 0.89685 1.22171 0.95661 1.02492 1.00968 1.21917 1.00094 0.94135 0.96814 0.92804 1.21454 1.01898 0.92967 0.97372 1.21889 0.99493 0.98018 0.96804 1.21097 0.95822 0.88345 0.93533 1.44297 1.82711 1.02053 1.04448 1.19423 1.32532 1.02898 0.84892 0.92113 1.25678 0.97975 0.99284 1.00885 1.70163 1.34137 1.13939 1.38840 0.85469 0.78197 0.76940 0.80602 1.20332 1.21732 1.20851 1.20603 0.94076 0.88815 0.90025 1.73629 1.19042 1.04652 1.14969 1.45796 1.43900 1.07319 1.09591 1.22594 1.06443 1.02265 0.75427 0.93089 0.89463 0.93151 0.88176 0.87813 0.81641 0.75786 0.89461 0.93166 0.93274 0.91465 0.90507 0.89597 0.93085 0.93202 0.96740 0.94194 0.97646 0.92751 0.88070 0.85040 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.89 71.98 0.71 -0.79 16 2 C -0.05 -0.56 6.00 29.85 0.18 -0.39 16 3 C 0.03 0.58 6.17 41.40 0.26 0.84 16 4 C -0.20 -5.70 10.73 22.41 0.24 -5.46 16 5 C -0.05 -1.63 7.13 42.45 0.30 -1.32 16 6 C 0.60 23.57 7.79 86.74 0.68 24.25 16 7 O -0.57 -23.87 16.59 -3.93 -0.07 -23.93 16 8 N -0.71 -27.61 5.00 -445.54 -2.23 -29.84 16 9 C 0.16 5.63 2.41 44.99 0.11 5.73 16 10 H 0.09 3.00 7.58 -2.39 -0.02 2.99 16 11 C -0.15 -5.29 8.79 71.98 0.63 -4.66 16 12 C -0.11 -4.18 2.33 -10.72 -0.02 -4.21 16 13 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 14 C -0.10 -3.17 4.78 30.62 0.15 -3.03 16 15 C -0.12 -4.08 6.08 30.67 0.19 -3.89 16 16 C 0.14 5.74 6.51 86.36 0.56 6.30 16 17 N -0.61 -31.00 3.00 -699.00 -2.10 -33.10 16 18 C -0.27 -14.87 9.58 84.03 0.81 -14.06 16 19 H 0.06 3.33 7.88 -2.91 -0.02 3.30 16 20 C -0.04 -2.35 4.92 84.86 0.42 -1.93 16 21 N -0.93 -54.11 11.20 21.65 0.24 -53.87 16 22 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 26 C 0.19 9.08 4.08 86.35 0.35 9.43 16 27 N -0.29 -9.88 11.67 -48.18 -0.56 -10.44 16 28 N -0.28 -7.00 3.70 -355.92 -1.32 -8.32 16 29 C 0.07 1.08 10.89 127.77 1.39 2.47 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.68 7.42 -2.39 -0.02 0.66 16 34 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.17 4.31 8.06 -2.91 -0.02 4.28 16 36 H 0.41 17.23 6.70 -92.71 -0.62 16.61 16 37 H 0.09 2.55 6.46 -2.38 -0.02 2.53 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.05 1.87 6.32 -2.39 -0.02 1.86 16 40 H 0.07 2.09 6.50 -2.39 -0.02 2.08 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 45 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 47 H 0.01 0.29 6.17 -2.39 -0.01 0.27 16 48 H 0.05 2.92 4.66 -2.39 -0.01 2.91 16 49 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.13 0.94 7.44 -2.39 -0.02 0.92 16 51 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -73.68 399.30 3.25 -70.43 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: 0.30 Total: 32.82 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 6.94 Total: 9.29 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.96 Total: -135.56 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -73.68 3.25 -70.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025633683.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.191 kcal (2) G-P(sol) polarization free energy of solvation -73.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds