Wall clock time and date at job start Tue Mar 31 2020 20:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47448 * 2 1 4 4 C 1.53001 * 109.47168 * 239.99809 * 2 1 3 5 5 C 1.50701 * 109.47285 * 120.00247 * 2 1 3 6 6 C 1.39669 * 126.07278 * 74.99278 * 5 2 1 7 7 C 1.38400 * 105.36458 * 180.02562 * 6 5 2 8 8 C 1.47165 * 126.89022 * 180.02562 * 7 6 5 9 9 O 1.21633 * 119.99629 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00336 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00256 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47473 * 205.00145 * 11 10 8 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 11 15 15 N 1.46505 * 109.46998 * 180.02562 * 14 13 12 16 16 C 1.36939 * 119.99584 * 204.99673 * 15 14 13 17 17 H 1.07993 * 120.00301 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99501 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99797 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00314 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46935 * 89.99915 * 20 18 16 22 22 H 1.48501 * 109.47224 * 210.00179 * 20 18 16 23 23 H 1.48498 * 109.46998 * 330.00313 * 20 18 16 24 24 C 1.53002 * 109.46891 * 299.99597 * 14 13 12 25 25 C 1.52997 * 109.46978 * 60.00410 * 24 14 13 26 26 N 1.36608 * 106.22896 * 0.26200 * 7 6 5 27 27 H 0.97001 * 125.18543 * 179.73998 * 26 7 6 28 28 N 1.28438 * 109.61800 * 359.55547 * 26 7 6 29 29 H 1.09002 * 109.46844 * 300.00109 * 1 2 3 30 30 H 1.08998 * 109.46875 * 60.00179 * 1 2 3 31 31 H 1.09004 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47187 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46936 * 299.99783 * 3 2 1 34 34 H 1.09002 * 109.47187 * 60.00101 * 3 2 1 35 35 H 1.09004 * 109.47078 * 300.00090 * 4 2 1 36 36 H 1.08998 * 109.47213 * 60.00219 * 4 2 1 37 37 H 1.09003 * 109.47199 * 180.02562 * 4 2 1 38 38 H 1.08003 * 127.31989 * 0.02562 * 6 5 2 39 39 H 0.97005 * 120.00370 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.46845 * 325.00694 * 11 10 8 41 41 H 1.09002 * 109.47153 * 59.99757 * 12 11 10 42 42 H 1.09001 * 109.46832 * 299.99948 * 12 11 10 43 43 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 44 44 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 45 45 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 46 46 H 0.97001 * 119.99745 * 24.99557 * 15 14 13 47 47 H 0.97001 * 119.99968 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.47097 * 180.02562 * 24 14 13 49 49 H 1.09001 * 109.47142 * 300.00176 * 24 14 13 50 50 H 1.09001 * 109.47375 * 59.99908 * 25 24 14 51 51 H 1.09000 * 109.47140 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 2.0309 -2.0912 1.4410 7 6 2.5814 -2.2710 2.6980 8 6 2.8033 -3.5504 3.3905 9 8 2.4900 -4.5954 2.8526 10 7 3.3538 -3.5644 4.6206 11 6 3.5752 -4.8381 5.3097 12 6 3.5996 -4.6028 6.8212 13 6 3.8315 -5.9330 7.5408 14 6 5.1692 -6.5272 7.0956 15 7 5.3909 -7.8012 7.7841 16 6 6.6654 -8.2670 7.9685 17 1 7.5070 -7.6951 7.6067 18 6 6.8755 -9.4739 8.6214 19 7 8.1004 -9.9219 8.7981 20 14 5.4198 -10.4628 9.2478 21 1 4.9652 -11.3995 8.1889 22 1 5.8259 -11.2342 10.4500 23 1 4.3110 -9.5409 9.6025 24 6 5.1448 -6.7626 5.5840 25 6 4.9130 -5.4324 4.8644 26 7 2.8726 -1.0223 3.1695 27 1 3.2676 -0.8294 4.0341 28 7 2.5469 -0.1432 2.2916 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 1.6757 -2.8561 0.7663 39 1 3.6041 -2.7310 5.0495 40 1 2.7699 -5.5297 5.0625 41 1 2.6467 -4.1790 7.1384 42 1 4.4050 -3.9112 7.0683 43 1 3.8484 -5.7653 8.6177 44 1 3.0263 -6.6249 7.2937 45 1 5.9744 -5.8353 7.3426 46 1 4.6350 -8.3146 8.1094 47 1 8.2472 -10.7651 9.2547 48 1 6.0977 -7.1863 5.2668 49 1 4.3397 -7.4545 5.3369 50 1 5.7182 -4.7405 5.1115 51 1 4.8961 -5.6000 3.7875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026520719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:38 Heat of formation + Delta-G solvation = 21.495066 kcal Electronic energy + Delta-G solvation = -28525.312552 eV Core-core repulsion = 24653.342671 eV Total energy + Delta-G solvation = -3871.969881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.95536 -40.01689 -38.09504 -37.29495 -35.14202 -33.24899 -31.46203 -31.36990 -30.66358 -30.54744 -27.96755 -27.59707 -27.47888 -24.20371 -23.25979 -22.76826 -22.42882 -21.08783 -20.82045 -19.97220 -19.14097 -18.77283 -17.51870 -16.47075 -16.15323 -16.08367 -15.42807 -15.09605 -14.88633 -14.51113 -14.31346 -14.25335 -14.01066 -13.89280 -13.77673 -13.49334 -12.99387 -12.73074 -12.64632 -12.50428 -12.24409 -12.06249 -11.99679 -11.83160 -11.71415 -11.45614 -11.36729 -11.26664 -10.98013 -10.91099 -10.88967 -10.71332 -10.34380 -10.26480 -10.13801 -9.89482 -9.59083 -9.52603 -9.46431 -9.16324 -8.90473 -7.27669 -5.77797 -3.13303 0.93845 2.20686 2.40683 2.74526 2.96171 3.36879 3.40153 3.45054 3.98858 4.30194 4.41192 4.58474 4.63975 4.69831 4.80072 4.85961 4.93473 5.02611 5.15994 5.28141 5.29979 5.37911 5.40633 5.43723 5.45115 5.46904 5.55136 5.56032 5.56446 5.67508 5.70129 5.71874 5.78148 5.84735 5.95820 5.98825 6.00102 6.07510 6.11285 6.13832 6.29119 6.36222 6.42830 6.54713 6.59670 6.84849 7.00686 7.14338 7.62302 7.84651 7.98621 8.41426 9.20082 9.92790 10.12553 11.40539 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.034523 B = 0.001852 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.866934 B =15112.840922 C =15177.348393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.016 3.984 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.039 3.961 6 C -0.147 4.147 7 C -0.035 4.035 8 C 0.589 3.411 9 O -0.516 6.516 10 N -0.722 5.722 11 C 0.145 3.855 12 C -0.119 4.119 13 C -0.124 4.124 14 C 0.181 3.819 15 N -0.749 5.749 16 C -0.243 4.243 17 H 0.090 0.910 18 C 0.004 3.996 19 N -0.934 5.934 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.133 4.133 25 C -0.125 4.125 26 N -0.380 5.380 27 H 0.443 0.557 28 N -0.265 5.265 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.163 0.837 39 H 0.392 0.608 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.361 0.639 47 H 0.259 0.741 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.061 0.939 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 24.085 -15.766 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.119 4.119 6 C -0.176 4.176 7 C -0.163 4.163 8 C 0.373 3.627 9 O -0.390 6.390 10 N -0.372 5.372 11 C 0.042 3.958 12 C -0.158 4.158 13 C -0.163 4.163 14 C 0.072 3.928 15 N -0.391 5.391 16 C -0.373 4.373 17 H 0.108 0.892 18 C -0.192 4.192 19 N -0.582 5.582 20 Si 0.715 3.285 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.173 4.173 25 C -0.164 4.164 26 N -0.096 5.096 27 H 0.288 0.712 28 N -0.097 5.097 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.180 0.820 39 H 0.225 0.775 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.193 0.807 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.107 24.250 -15.662 32.582 hybrid contribution -0.680 -1.145 0.934 1.626 sum -15.787 23.105 -14.729 31.623 Atomic orbital electron populations 1.21876 0.93246 1.02398 1.02090 1.18923 0.95442 0.94849 0.89339 1.21771 1.01319 0.94238 1.01925 1.21894 1.01460 1.00551 0.95903 1.21924 1.02856 0.91615 0.95515 1.22005 1.03729 0.96540 0.95351 1.21821 1.10157 0.86513 0.97855 1.16991 0.77835 0.86723 0.81139 1.90872 1.50849 1.31699 1.65551 1.46064 1.63353 1.10481 1.17328 1.21209 0.99167 0.83898 0.91496 1.21748 1.01856 0.99128 0.93028 1.21792 0.99169 0.95218 1.00089 1.20216 0.94212 0.88236 0.90129 1.42784 1.05374 1.21903 1.69054 1.19070 0.83902 1.03191 1.31096 0.89243 1.24679 0.95927 0.97772 1.00839 1.69702 1.18583 1.22121 1.47798 0.86547 0.82899 0.80472 0.78587 1.21092 1.21802 1.20341 1.22194 1.02409 0.94922 0.97815 1.21907 0.95691 0.98340 1.00452 1.43606 1.46717 1.02907 1.16403 0.71194 1.73079 1.16672 1.19861 1.00136 0.92498 0.91829 0.92158 0.92469 0.92379 0.92041 0.92008 0.91800 0.92324 0.81950 0.77456 0.89029 0.91713 0.91313 0.91178 0.91988 0.92711 0.80675 0.93086 0.91156 0.92479 0.92054 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.46 37.16 0.31 -0.52 16 2 C 0.02 0.11 0.96 -155.66 -0.15 -0.04 16 3 C -0.14 -0.88 8.04 37.15 0.30 -0.58 16 4 C -0.14 -0.85 8.20 37.16 0.30 -0.55 16 5 C 0.04 0.36 5.65 -82.47 -0.47 -0.11 16 6 C -0.15 -1.47 10.12 -38.99 -0.39 -1.87 16 7 C -0.04 -0.35 7.16 -82.06 -0.59 -0.94 16 8 C 0.59 6.86 7.77 -12.64 -0.10 6.77 16 9 O -0.52 -8.04 16.58 5.25 0.09 -7.95 16 10 N -0.72 -6.79 5.07 -54.96 -0.28 -7.07 16 11 C 0.15 1.70 2.46 -67.93 -0.17 1.53 16 12 C -0.12 -1.27 5.39 -26.73 -0.14 -1.41 16 13 C -0.12 -1.75 5.39 -26.73 -0.14 -1.90 16 14 C 0.18 3.28 2.77 -67.93 -0.19 3.09 16 15 N -0.75 -17.25 4.92 -53.43 -0.26 -17.51 16 16 C -0.24 -6.74 10.41 -15.06 -0.16 -6.89 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 19 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 20 Si 0.88 22.03 27.74 -169.99 -4.71 17.32 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 24 C -0.13 -2.25 5.50 -26.73 -0.15 -2.39 16 25 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 26 N -0.38 -2.99 6.85 33.48 0.23 -2.76 16 27 H 0.44 2.00 8.22 -190.46 -1.57 0.43 16 28 N -0.26 -2.47 11.48 33.64 0.39 -2.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.06 0.37 7.60 -51.93 -0.39 -0.02 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.16 1.53 7.79 -52.48 -0.41 1.12 16 39 H 0.39 2.38 7.79 -40.82 -0.32 2.06 16 40 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 46 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 47 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -34.15 405.91 -9.71 -43.86 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -10.08 Total: 6.17 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.97 Total: -7.64 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.85 Total: -57.87 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.15 -9.71 -43.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026520719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.358 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds