Wall clock time and date at job start Tue Mar 31 2020 20:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.52998 * 109.47403 * 240.00001 * 2 1 3 5 5 C 1.50703 * 109.46748 * 119.99833 * 2 1 3 6 6 N 1.30450 * 125.98781 * 241.25108 * 5 2 1 7 7 N 1.39932 * 108.89579 * 180.02562 * 6 5 2 8 8 H 0.97004 * 125.75260 * 180.02562 * 7 6 5 9 9 C 1.34253 * 108.49499 * 359.75101 * 7 6 5 10 10 C 1.38047 * 107.41560 * 0.39873 * 9 7 6 11 11 C 1.47432 * 126.41351 * 179.87641 * 10 9 7 12 12 O 1.21606 * 119.99691 * 175.77746 * 11 10 9 13 13 N 1.34769 * 120.00092 * 355.76975 * 11 10 9 14 14 C 1.46507 * 119.99890 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46985 * 205.00178 * 14 13 11 16 16 C 1.53004 * 109.46793 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.46941 * 60.00128 * 16 15 14 18 18 N 1.46502 * 109.46910 * 179.97438 * 17 16 15 19 19 C 1.36933 * 120.00323 * 275.00174 * 18 17 16 20 20 H 1.07996 * 119.99927 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00128 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00030 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47092 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47076 * 120.00009 * 23 21 19 26 26 H 1.48495 * 109.47289 * 240.00124 * 23 21 19 27 27 C 1.53003 * 109.47273 * 299.99578 * 17 16 15 28 28 C 1.52994 * 109.46762 * 85.00297 * 14 13 11 29 29 H 1.08999 * 109.47233 * 308.37044 * 1 2 3 30 30 H 1.08998 * 109.46990 * 68.37424 * 1 2 3 31 31 H 1.09008 * 109.46804 * 188.37047 * 1 2 3 32 32 H 1.09001 * 109.47299 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.46922 * 300.00300 * 3 2 1 34 34 H 1.09008 * 109.46912 * 60.00065 * 3 2 1 35 35 H 1.09003 * 109.46927 * 291.73141 * 4 2 1 36 36 H 1.08997 * 109.46786 * 51.72529 * 4 2 1 37 37 H 1.08992 * 109.47415 * 171.72700 * 4 2 1 38 38 H 1.08002 * 126.29462 * 180.24365 * 9 7 6 39 39 H 0.96994 * 120.00422 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47312 * 325.00449 * 14 13 11 41 41 H 1.08996 * 109.47316 * 300.00268 * 15 14 13 42 42 H 1.09004 * 109.46915 * 59.99851 * 15 14 13 43 43 H 1.09000 * 109.46968 * 180.02562 * 16 15 14 44 44 H 1.08997 * 109.47135 * 299.99647 * 16 15 14 45 45 H 1.08999 * 109.47660 * 60.00347 * 17 16 15 46 46 H 0.97008 * 119.99531 * 95.00357 * 18 17 16 47 47 H 0.96996 * 120.00370 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.47316 * 300.00164 * 27 17 16 49 49 H 1.09006 * 109.46741 * 180.02562 * 27 17 16 50 50 H 1.09000 * 109.47283 * 299.99926 * 28 14 13 51 51 H 1.08999 * 109.47660 * 60.00474 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7664 -0.1857 2.1726 7 7 3.0262 -1.1616 3.1412 8 1 3.5493 -1.0342 3.9481 9 6 2.4242 -2.3023 2.7686 10 6 1.7912 -2.0616 1.5657 11 6 1.0051 -3.0312 0.7810 12 8 0.4314 -2.6727 -0.2295 13 7 0.9226 -4.3147 1.1836 14 6 0.1419 -5.2782 0.4035 15 6 -0.3154 -6.4200 1.3136 16 6 -1.1302 -7.4265 0.4987 17 6 -0.2638 -7.9895 -0.6296 18 7 -1.0437 -8.9538 -1.4094 19 6 -1.1271 -10.2578 -1.0000 20 1 -0.6175 -10.5756 -0.1024 21 6 -1.8665 -11.1713 -1.7387 22 7 -2.4880 -10.7840 -2.8323 23 14 -1.9796 -12.9504 -1.1806 24 1 -1.1978 -13.1277 0.0695 25 1 -3.4006 -13.3009 -0.9291 26 1 -1.4309 -13.8368 -2.2381 27 6 0.1935 -6.8478 -1.5397 28 6 1.0078 -5.8413 -0.7252 29 1 -0.3634 0.6379 0.8057 30 1 -0.3633 0.3787 -0.9553 31 1 -0.3633 -1.0168 0.1496 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.8025 -1.7827 -1.1784 36 1 1.5611 -0.2999 -2.1330 37 1 3.1200 -0.5950 -1.3262 38 1 2.4355 -3.2372 3.3092 39 1 1.3800 -4.6006 1.9897 40 1 -0.7299 -4.7806 -0.0212 41 1 0.5564 -6.9176 1.7382 42 1 -0.9323 -6.0187 2.1178 43 1 -1.4564 -8.2397 1.1472 44 1 -2.0020 -6.9291 0.0739 45 1 0.6080 -8.4870 -0.2047 46 1 -1.5011 -8.6684 -2.2159 47 1 -3.0050 -11.4222 -3.3483 48 1 -0.6783 -6.3504 -1.9647 49 1 0.8105 -7.2491 -2.3438 50 1 1.3336 -5.0279 -1.3736 51 1 1.8796 -6.3391 -0.3007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026591114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:44 Heat of formation + Delta-G solvation = 26.781851 kcal Electronic energy + Delta-G solvation = -29450.777278 eV Core-core repulsion = 25579.036649 eV Total energy + Delta-G solvation = -3871.740629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86835 -39.64466 -37.92223 -36.80905 -34.76006 -33.07009 -31.33052 -31.14040 -30.38516 -30.11811 -27.39393 -27.17141 -27.04893 -23.99210 -23.10869 -22.81986 -22.27793 -21.04862 -20.25098 -19.53300 -18.65904 -18.40497 -17.04907 -16.56321 -16.02825 -15.49847 -15.21515 -15.04993 -14.81789 -14.36760 -14.29303 -14.05857 -13.80719 -13.61110 -13.50900 -13.06813 -12.83177 -12.60201 -12.30123 -12.23588 -12.01221 -11.77366 -11.58422 -11.44254 -11.42168 -11.25856 -11.07382 -10.89259 -10.76325 -10.72529 -10.71270 -10.52684 -10.20249 -10.11485 -9.82027 -9.70548 -9.68638 -9.48483 -9.14148 -8.88847 -8.79526 -6.92478 -5.74257 -3.02649 1.18646 1.93392 2.34497 3.19691 3.33578 3.43750 3.48973 3.51541 4.09339 4.27387 4.60482 4.67697 4.85080 4.96684 4.97218 5.06162 5.11670 5.23188 5.27266 5.34839 5.55915 5.60148 5.61301 5.67312 5.68324 5.78099 5.85554 5.86190 5.86897 5.90244 5.91211 6.01641 6.03662 6.07646 6.26089 6.27823 6.32312 6.33507 6.47379 6.48010 6.54048 6.62103 6.72705 6.73880 6.74857 7.00962 7.15128 7.22178 7.54800 7.72021 8.29657 8.44629 9.55500 10.15042 10.49366 11.48565 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002198 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.616124 B =12735.064733 C =13377.180479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.018 3.982 3 C -0.137 4.137 4 C -0.148 4.148 5 C 0.150 3.850 6 N -0.297 5.297 7 N -0.464 5.464 8 H 0.443 0.557 9 C 0.101 3.899 10 C -0.283 4.283 11 C 0.587 3.413 12 O -0.523 6.523 13 N -0.723 5.723 14 C 0.148 3.852 15 C -0.122 4.122 16 C -0.131 4.131 17 C 0.178 3.822 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.121 4.121 28 C -0.120 4.120 29 H 0.042 0.958 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.185 0.815 39 H 0.392 0.608 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.809 22.163 12.823 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.019 4.019 6 N -0.118 5.118 7 N -0.168 5.168 8 H 0.287 0.713 9 C -0.052 4.052 10 C -0.298 4.298 11 C 0.375 3.625 12 O -0.402 6.402 13 N -0.373 5.373 14 C 0.044 3.956 15 C -0.160 4.160 16 C -0.172 4.172 17 C 0.068 3.932 18 N -0.366 5.366 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.202 0.798 39 H 0.226 0.774 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.004 23.285 12.583 29.062 hybrid contribution -0.050 -1.816 0.865 2.013 sum 11.954 21.469 13.448 28.012 Atomic orbital electron populations 1.22115 0.92491 1.04868 1.01144 1.19003 0.96393 0.93836 0.89207 1.21838 1.01098 0.94789 1.01737 1.22089 0.99462 1.03810 0.95177 1.22489 0.93127 0.91338 0.94927 1.77193 1.21741 1.12543 1.00319 1.46135 1.41792 1.07800 1.21082 0.71276 1.23152 0.93930 0.92292 0.95782 1.20358 1.13510 0.96420 0.99515 1.17224 0.79863 0.81215 0.84189 1.90656 1.46226 1.77918 1.25365 1.46019 1.53299 1.08884 1.29078 1.21092 0.94272 0.88486 0.91719 1.21813 1.00385 0.95886 0.97954 1.22218 0.99046 0.97243 0.98738 1.20233 0.93102 0.89142 0.90767 1.42455 1.59265 1.05861 1.29016 1.19278 1.25215 0.85594 1.06626 0.91213 1.24745 1.00632 0.98141 0.97623 1.69670 1.37214 1.33910 1.17306 0.86150 0.77240 0.85384 0.77619 1.20629 1.21945 1.21935 1.21752 0.99700 0.96083 0.98470 1.21826 0.98410 0.98634 0.97044 0.93878 0.92207 0.88808 0.92590 0.92258 0.92562 0.89093 0.92145 0.93798 0.79842 0.77421 0.89247 0.91983 0.92300 0.91662 0.92374 0.93712 0.78277 0.93598 0.92025 0.91704 0.91891 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.20 37.16 0.30 -1.35 16 2 C 0.02 0.19 0.75 -155.66 -0.12 0.08 16 3 C -0.14 -1.29 7.94 37.16 0.30 -1.00 16 4 C -0.15 -1.65 8.19 37.16 0.30 -1.35 16 5 C 0.15 1.65 5.64 -82.02 -0.46 1.19 16 6 N -0.30 -3.06 11.93 33.90 0.40 -2.65 16 7 N -0.46 -3.05 7.29 30.85 0.22 -2.83 16 8 H 0.44 1.31 8.96 -182.72 -1.64 -0.33 16 9 C 0.10 0.64 11.52 -16.56 -0.19 0.45 16 10 C -0.28 -2.83 5.90 -105.06 -0.62 -3.45 16 11 C 0.59 6.76 7.18 -12.52 -0.09 6.67 16 12 O -0.52 -7.43 10.04 5.27 0.05 -7.37 16 13 N -0.72 -7.09 5.07 -54.88 -0.28 -7.37 16 14 C 0.15 1.82 2.46 -67.93 -0.17 1.65 16 15 C -0.12 -1.49 5.39 -26.73 -0.14 -1.64 16 16 C -0.13 -2.20 5.50 -26.73 -0.15 -2.34 16 17 C 0.18 3.38 2.77 -67.93 -0.19 3.20 16 18 N -0.73 -17.94 5.12 -53.43 -0.27 -18.21 16 19 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 22 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 23 Si 0.90 22.27 29.55 -169.99 -5.02 17.24 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 C -0.12 -2.00 5.39 -26.75 -0.14 -2.14 16 28 C -0.12 -1.61 5.49 -26.76 -0.15 -1.76 16 29 H 0.04 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.09 1.23 4.71 -51.92 -0.24 0.98 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.09 1.19 4.64 -51.93 -0.24 0.95 16 36 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.18 0.38 7.48 -52.49 -0.39 -0.01 16 39 H 0.39 2.65 7.54 -40.82 -0.31 2.34 16 40 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.04 0.87 8.08 -51.93 -0.42 0.46 16 46 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -33.35 396.02 -9.79 -43.14 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -9.83 Total: 8.47 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.76 Total: -8.94 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.80 Total: -58.51 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.05 Total: -7.37 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.35 -9.79 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026591114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.924 kcal (2) G-P(sol) polarization free energy of solvation -33.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds