Wall clock time and date at job start Tue Mar 31 2020 20:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47027 * 2 1 4 4 C 1.52998 * 109.47403 * 240.00001 * 2 1 3 5 5 C 1.50703 * 109.46748 * 119.99833 * 2 1 3 6 6 N 1.30450 * 125.98781 * 241.25108 * 5 2 1 7 7 N 1.39932 * 108.89579 * 180.02562 * 6 5 2 8 8 H 0.97004 * 125.75260 * 180.02562 * 7 6 5 9 9 C 1.34253 * 108.49499 * 359.75101 * 7 6 5 10 10 C 1.38047 * 107.41560 * 0.39873 * 9 7 6 11 11 C 1.47432 * 126.41351 * 179.87641 * 10 9 7 12 12 O 1.21606 * 119.99691 * 175.77746 * 11 10 9 13 13 N 1.34769 * 120.00092 * 355.76975 * 11 10 9 14 14 C 1.46507 * 119.99890 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.46985 * 205.00178 * 14 13 11 16 16 C 1.53004 * 109.46793 * 180.02562 * 15 14 13 17 17 C 1.52994 * 109.46941 * 60.00128 * 16 15 14 18 18 N 1.46502 * 109.46910 * 179.97438 * 17 16 15 19 19 C 1.36933 * 120.00323 * 275.00174 * 18 17 16 20 20 H 1.07996 * 119.99927 * 359.97438 * 19 18 17 21 21 C 1.38816 * 120.00128 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00030 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00113 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47092 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47076 * 120.00009 * 23 21 19 26 26 H 1.48495 * 109.47289 * 240.00124 * 23 21 19 27 27 C 1.53003 * 109.47273 * 299.99578 * 17 16 15 28 28 C 1.52994 * 109.46762 * 85.00297 * 14 13 11 29 29 H 1.08999 * 109.47233 * 308.37044 * 1 2 3 30 30 H 1.08998 * 109.46990 * 68.37424 * 1 2 3 31 31 H 1.09008 * 109.46804 * 188.37047 * 1 2 3 32 32 H 1.09001 * 109.47299 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.46922 * 300.00300 * 3 2 1 34 34 H 1.09008 * 109.46912 * 60.00065 * 3 2 1 35 35 H 1.09003 * 109.46927 * 291.73141 * 4 2 1 36 36 H 1.08997 * 109.46786 * 51.72529 * 4 2 1 37 37 H 1.08992 * 109.47415 * 171.72700 * 4 2 1 38 38 H 1.08002 * 126.29462 * 180.24365 * 9 7 6 39 39 H 0.96994 * 120.00422 * 0.02562 * 13 11 10 40 40 H 1.08996 * 109.47312 * 325.00449 * 14 13 11 41 41 H 1.08996 * 109.47316 * 300.00268 * 15 14 13 42 42 H 1.09004 * 109.46915 * 59.99851 * 15 14 13 43 43 H 1.09000 * 109.46968 * 180.02562 * 16 15 14 44 44 H 1.08997 * 109.47135 * 299.99647 * 16 15 14 45 45 H 1.08999 * 109.47660 * 60.00347 * 17 16 15 46 46 H 0.97008 * 119.99531 * 95.00357 * 18 17 16 47 47 H 0.96996 * 120.00370 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.47316 * 300.00164 * 27 17 16 49 49 H 1.09006 * 109.46741 * 180.02562 * 27 17 16 50 50 H 1.09000 * 109.47283 * 299.99926 * 28 14 13 51 51 H 1.08999 * 109.47660 * 60.00474 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7664 -0.1857 2.1726 7 7 3.0262 -1.1616 3.1412 8 1 3.5493 -1.0342 3.9481 9 6 2.4242 -2.3023 2.7686 10 6 1.7912 -2.0616 1.5657 11 6 1.0051 -3.0312 0.7810 12 8 0.4314 -2.6727 -0.2295 13 7 0.9226 -4.3147 1.1836 14 6 0.1419 -5.2782 0.4035 15 6 -0.3154 -6.4200 1.3136 16 6 -1.1302 -7.4265 0.4987 17 6 -0.2638 -7.9895 -0.6296 18 7 -1.0437 -8.9538 -1.4094 19 6 -1.1271 -10.2578 -1.0000 20 1 -0.6175 -10.5756 -0.1024 21 6 -1.8665 -11.1713 -1.7387 22 7 -2.4880 -10.7840 -2.8323 23 14 -1.9796 -12.9504 -1.1806 24 1 -1.1978 -13.1277 0.0695 25 1 -3.4006 -13.3009 -0.9291 26 1 -1.4309 -13.8368 -2.2381 27 6 0.1935 -6.8478 -1.5397 28 6 1.0078 -5.8413 -0.7252 29 1 -0.3634 0.6379 0.8057 30 1 -0.3633 0.3787 -0.9553 31 1 -0.3633 -1.0168 0.1496 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.8025 -1.7827 -1.1784 36 1 1.5611 -0.2999 -2.1330 37 1 3.1200 -0.5950 -1.3262 38 1 2.4355 -3.2372 3.3092 39 1 1.3800 -4.6006 1.9897 40 1 -0.7299 -4.7806 -0.0212 41 1 0.5564 -6.9176 1.7382 42 1 -0.9323 -6.0187 2.1178 43 1 -1.4564 -8.2397 1.1472 44 1 -2.0020 -6.9291 0.0739 45 1 0.6080 -8.4870 -0.2047 46 1 -1.5011 -8.6684 -2.2159 47 1 -3.0050 -11.4222 -3.3483 48 1 -0.6783 -6.3504 -1.9647 49 1 0.8105 -7.2491 -2.3438 50 1 1.3336 -5.0279 -1.3736 51 1 1.8796 -6.3391 -0.3007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026591114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:42 Heat of formation + Delta-G solvation = 4.163405 kcal Electronic energy + Delta-G solvation = -29451.758088 eV Core-core repulsion = 25579.036649 eV Total energy + Delta-G solvation = -3872.721439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52943 -40.60716 -39.08826 -37.65310 -36.19239 -34.55512 -32.61974 -31.93878 -31.62210 -31.23447 -28.73668 -28.05067 -27.94032 -25.66006 -24.06945 -23.65162 -23.51724 -22.23633 -21.19908 -20.70911 -19.46359 -19.13327 -19.00018 -17.36090 -17.08698 -16.70066 -16.27755 -15.99640 -15.78146 -15.60096 -15.33844 -15.14782 -15.03701 -15.02477 -14.44720 -14.38464 -13.99678 -13.72715 -13.57965 -13.13016 -13.01746 -12.99960 -12.92181 -12.81563 -12.41840 -12.34224 -12.27289 -12.14040 -12.02147 -11.95720 -11.91896 -11.89119 -11.62866 -11.53835 -11.36460 -11.03732 -10.81500 -10.51721 -10.48693 -9.93054 -9.63481 -8.95594 -7.90192 -5.18221 0.62342 1.16783 1.48999 1.49762 1.59572 1.85291 2.34979 2.54347 2.59495 3.43048 3.43520 3.72688 3.83086 3.90738 3.98141 4.09670 4.15277 4.15679 4.32471 4.42058 4.46248 4.48128 4.51232 4.54401 4.66087 4.67112 4.75595 4.84259 4.85486 4.93690 4.99377 5.04080 5.07473 5.13115 5.15860 5.19384 5.21699 5.26513 5.31109 5.36342 5.50160 5.51349 5.56391 5.57401 5.61806 5.71704 5.81887 6.32531 6.32887 6.56272 6.82350 7.37511 7.50581 8.16058 8.37981 9.34015 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.002198 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.616124 B =12735.064733 C =13377.180479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.142 4.142 5 C 0.133 3.867 6 N -0.322 5.322 7 N -0.450 5.450 8 H 0.460 0.540 9 C 0.134 3.866 10 C -0.316 4.316 11 C 0.586 3.414 12 O -0.557 6.557 13 N -0.708 5.708 14 C 0.158 3.842 15 C -0.107 4.107 16 C -0.124 4.124 17 C 0.173 3.827 18 N -0.742 5.742 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.296 1.296 27 C -0.113 4.113 28 C -0.108 4.108 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.234 0.766 39 H 0.412 0.588 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.047 0.953 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.738 22.398 16.039 30.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.200 4.200 5 C -0.035 4.035 6 N -0.144 5.144 7 N -0.155 5.155 8 H 0.308 0.692 9 C -0.021 4.021 10 C -0.331 4.331 11 C 0.375 3.625 12 O -0.438 6.438 13 N -0.359 5.359 14 C 0.053 3.947 15 C -0.145 4.145 16 C -0.164 4.164 17 C 0.065 3.935 18 N -0.381 5.381 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.274 4.274 22 N -0.625 5.625 23 Si 0.800 3.200 24 H -0.187 1.187 25 H -0.224 1.224 26 H -0.224 1.224 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.250 0.750 39 H 0.249 0.751 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.201 0.799 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.000 23.558 15.890 31.678 hybrid contribution -0.588 -1.818 -0.083 1.913 sum 13.413 21.740 15.807 30.040 Atomic orbital electron populations 1.22028 0.93103 1.03671 1.01257 1.18987 0.95936 0.94524 0.89370 1.21765 1.00849 0.94076 1.02042 1.22005 0.99557 1.02728 0.95707 1.22514 0.93722 0.92096 0.95145 1.77123 1.22232 1.13999 1.01061 1.46177 1.41162 1.07292 1.20907 0.69200 1.23784 0.90842 0.93357 0.94092 1.20302 1.15568 0.95868 1.01345 1.17479 0.79498 0.81657 0.83875 1.90652 1.47611 1.78531 1.26977 1.45703 1.52958 1.07885 1.29397 1.20754 0.93559 0.88739 0.91607 1.21665 1.00840 0.94568 0.97463 1.22002 0.98687 0.97799 0.97944 1.20493 0.92792 0.88879 0.91348 1.42728 1.59809 1.06280 1.29240 1.19682 1.23719 0.86672 1.06164 0.90321 1.25571 1.01375 1.02324 0.98174 1.69836 1.38795 1.34983 1.18875 0.85100 0.76897 0.80370 0.77599 1.18677 1.22396 1.22398 1.21626 0.99438 0.95914 0.98205 1.21712 0.98501 0.97522 0.97028 0.93622 0.92089 0.90637 0.92801 0.91401 0.92751 0.90889 0.92050 0.93576 0.74978 0.75125 0.91615 0.89598 0.90193 0.93129 0.94009 0.93476 0.79946 0.94252 0.93347 0.92910 0.92443 0.90484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.20 71.98 0.59 -2.63 16 2 C 0.01 0.30 0.75 -52.93 -0.04 0.26 16 3 C -0.13 -2.38 7.94 71.98 0.57 -1.81 16 4 C -0.14 -3.22 8.19 71.98 0.59 -2.63 16 5 C 0.13 2.78 5.64 43.52 0.25 3.03 16 6 N -0.32 -6.03 11.93 -46.67 -0.56 -6.59 16 7 N -0.45 -4.37 7.29 -56.32 -0.41 -4.78 16 8 H 0.46 0.95 8.96 -213.42 -1.91 -0.96 16 9 C 0.13 1.14 11.52 84.28 0.97 2.11 16 10 C -0.32 -5.63 5.90 -20.15 -0.12 -5.75 16 11 C 0.59 12.60 7.18 86.67 0.62 13.23 16 12 O -0.56 -15.92 10.04 -4.05 -0.04 -15.96 16 13 N -0.71 -11.81 5.07 -445.80 -2.26 -14.07 16 14 C 0.16 3.59 2.46 44.99 0.11 3.70 16 15 C -0.11 -2.30 5.39 30.60 0.16 -2.14 16 16 C -0.12 -4.02 5.50 30.59 0.17 -3.85 16 17 C 0.17 6.53 2.77 44.99 0.12 6.65 16 18 N -0.74 -37.33 5.12 -322.95 -1.65 -38.98 16 19 C -0.23 -12.64 9.93 84.03 0.83 -11.81 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 22 N -0.97 -60.41 13.06 21.65 0.28 -60.13 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 C -0.11 -3.75 5.39 30.58 0.16 -3.58 16 28 C -0.11 -2.77 5.49 30.58 0.17 -2.60 16 29 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 30 H 0.06 1.29 8.08 -2.39 -0.02 1.27 16 31 H 0.08 2.03 4.71 -2.38 -0.01 2.02 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.07 1.96 4.64 -2.39 -0.01 1.95 16 36 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 37 H 0.05 0.97 8.13 -2.39 -0.02 0.96 16 38 H 0.23 -0.53 7.48 -2.91 -0.02 -0.55 16 39 H 0.41 3.59 7.54 -92.71 -0.70 2.89 16 40 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 46 H 0.37 20.39 7.80 -92.70 -0.72 19.66 16 47 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -75.54 396.02 0.64 -74.90 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -2.38 Total: 29.61 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: 5.63 Total: -12.13 kcal Atomic # 7 Polarization: -119.94 SS G_CDS: -4.60 Total: -124.54 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.04 Total: -15.96 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.54 0.64 -74.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026591114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.065 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds