Wall clock time and date at job start Tue Mar 31 2020 20:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99683 * 2 1 4 4 H 1.08003 * 119.99958 * 204.16269 * 3 2 1 5 5 C 1.38815 * 119.99935 * 24.16062 * 3 2 1 6 6 N 1.31614 * 120.00092 * 15.82976 * 5 3 2 7 7 Si 1.86803 * 119.99700 * 195.82425 * 5 3 2 8 8 H 1.48503 * 109.47237 * 60.00339 * 7 5 3 9 9 H 1.48495 * 109.46889 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47446 * 300.00188 * 7 5 3 11 11 C 1.46496 * 120.00408 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.49925 * 179.97438 * 11 2 1 13 13 C 1.53047 * 109.49282 * 299.99260 * 11 2 1 14 14 C 1.53045 * 109.53842 * 181.31558 * 13 11 2 15 15 C 1.53189 * 109.31333 * 298.63962 * 14 13 11 16 16 N 1.46928 * 108.77888 * 54.63147 * 15 14 13 17 17 C 1.34777 * 120.63082 * 126.36979 * 16 15 14 18 18 O 1.21632 * 119.99908 * 188.72543 * 17 16 15 19 19 C 1.47156 * 120.00126 * 8.72277 * 17 16 15 20 20 C 1.38402 * 126.89002 * 208.48182 * 19 17 16 21 21 C 1.39672 * 105.36559 * 180.02562 * 20 19 17 22 22 C 1.50697 * 126.07020 * 180.26130 * 21 20 19 23 23 C 1.53001 * 109.46888 * 74.71984 * 22 21 20 24 24 C 1.52999 * 109.47133 * 194.71971 * 22 21 20 25 25 C 1.53000 * 109.47302 * 314.72034 * 22 21 20 26 26 N 1.30865 * 107.86013 * 0.02562 * 21 20 19 27 27 N 1.28447 * 110.92682 * 359.97438 * 26 21 20 28 28 H 0.97000 * 125.18782 * 179.97438 * 27 26 21 29 29 C 1.46930 * 118.73700 * 306.64498 * 16 15 14 30 30 H 1.09004 * 109.46876 * 273.94451 * 1 2 3 31 31 H 1.08999 * 109.47727 * 33.94809 * 1 2 3 32 32 H 1.09000 * 109.46907 * 153.95328 * 1 2 3 33 33 H 0.96998 * 120.00120 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.45659 * 61.29980 * 13 11 2 35 35 H 1.08994 * 109.46239 * 301.33489 * 13 11 2 36 36 H 1.08995 * 109.49713 * 178.68068 * 14 13 11 37 37 H 1.09004 * 109.49260 * 58.58622 * 14 13 11 38 38 H 1.08998 * 109.58788 * 294.84476 * 15 14 13 39 39 H 1.09003 * 109.70733 * 174.48999 * 15 14 13 40 40 H 1.08004 * 127.31379 * 0.05024 * 20 19 17 41 41 H 1.09000 * 109.47198 * 59.99912 * 23 22 21 42 42 H 1.09001 * 109.46676 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47143 * 299.99529 * 23 22 21 44 44 H 1.09003 * 109.47152 * 60.00156 * 24 22 21 45 45 H 1.08995 * 109.47075 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47017 * 300.00127 * 24 22 21 47 47 H 1.08996 * 109.46950 * 59.99860 * 25 22 21 48 48 H 1.09001 * 109.47298 * 180.02562 * 25 22 21 49 49 H 1.09003 * 109.47093 * 299.99911 * 25 22 21 50 50 H 1.09001 * 109.58066 * 173.14128 * 29 16 15 51 51 H 1.09000 * 109.58733 * 293.56848 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1586 1.2270 -0.3829 5 6 1.5466 2.3354 0.4920 6 7 0.4630 2.2444 1.2334 7 14 2.2735 4.0115 0.1021 8 1 2.2870 4.2151 -1.3689 9 1 1.4497 5.0690 0.7410 10 1 3.6617 4.0828 0.6244 11 6 2.1975 -1.2686 -0.0006 12 1 3.2692 -1.0699 -0.0009 13 6 1.8283 -2.0721 1.2486 14 6 2.6177 -3.3832 1.2658 15 6 2.2498 -4.2123 0.0313 16 7 2.4654 -3.3937 -1.1697 17 6 3.2365 -3.8448 -2.1788 18 8 3.5375 -3.1014 -3.0933 19 6 3.7143 -5.2366 -2.1743 20 6 4.8767 -5.7178 -2.7511 21 6 4.8850 -7.0879 -2.4794 22 6 5.9521 -8.0681 -2.8936 23 6 7.1884 -7.8787 -2.0124 24 6 5.4242 -9.4950 -2.7319 25 6 6.3269 -7.8258 -4.3571 26 7 3.8042 -7.3682 -1.7969 27 7 3.0988 -6.3129 -1.6007 28 1 2.2572 -6.2846 -1.1193 29 6 1.8293 -2.0715 -1.2469 30 1 -0.3633 0.0707 1.0253 31 1 -0.3634 0.8524 -0.5739 32 1 -0.3633 -0.9233 -0.4513 33 1 0.0414 3.0476 1.5769 34 1 0.7607 -2.2913 1.2369 35 1 2.0700 -1.4912 2.1386 36 1 2.3718 -3.9441 2.1674 37 1 3.6856 -3.1649 1.2523 38 1 1.2023 -4.5080 0.0887 39 1 2.8785 -5.1015 -0.0150 40 1 5.6198 -5.1537 -3.2953 41 1 6.9214 -8.0513 -0.9698 42 1 7.9600 -8.5880 -2.3117 43 1 7.5644 -6.8621 -2.1277 44 1 4.5434 -9.6300 -3.3597 45 1 6.1961 -10.2040 -3.0310 46 1 5.1572 -9.6676 -1.6893 47 1 6.7029 -6.8092 -4.4722 48 1 7.0983 -8.5351 -4.6568 49 1 5.4461 -7.9607 -4.9849 50 1 2.1826 -1.5475 -2.1350 51 1 0.7468 -2.1891 -1.2958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027475860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:20 Heat of formation + Delta-G solvation = 59.217274 kcal Electronic energy + Delta-G solvation = -29752.384191 eV Core-core repulsion = 25882.050067 eV Total energy + Delta-G solvation = -3870.334124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.84447 -39.86679 -37.52726 -37.17511 -35.21713 -32.55607 -31.52962 -31.21877 -30.86322 -28.78962 -27.51027 -27.47079 -26.05521 -25.64378 -23.83073 -23.07289 -22.38762 -21.65631 -20.57173 -19.13653 -18.87474 -17.81857 -16.77564 -16.45197 -15.88643 -15.82359 -15.02817 -14.98462 -14.77645 -14.31021 -14.15167 -14.06328 -13.92831 -13.77995 -13.48986 -13.35889 -12.79679 -12.76270 -12.53291 -12.43010 -12.37563 -12.05670 -11.87946 -11.55053 -11.32735 -11.25049 -11.16513 -10.99812 -10.92757 -10.72538 -10.70352 -10.49919 -10.39152 -10.20840 -10.04270 -9.94542 -9.76488 -9.27541 -9.24212 -8.69421 -8.45294 -6.78603 -5.76513 -3.23214 1.21784 2.37216 2.57822 2.82647 3.20605 3.38945 3.44023 3.46529 4.11630 4.34391 4.46709 4.54223 4.68770 4.76582 4.92296 4.97814 5.09008 5.15311 5.26717 5.36358 5.39913 5.41474 5.42300 5.45492 5.53252 5.57244 5.67266 5.67718 5.69195 5.74472 5.83394 5.86419 5.90926 6.05258 6.08109 6.11031 6.12221 6.28776 6.31498 6.42068 6.49787 6.67626 6.77630 6.87118 6.92916 7.28083 7.37059 7.64710 7.79171 7.81415 8.08477 8.37024 9.19182 9.81909 10.30837 11.28356 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.002474 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.451481 B =11314.481103 C =11810.951548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.590 5.590 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.904 3.096 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.094 3.906 16 N -0.601 5.601 17 C 0.585 3.415 18 O -0.519 6.519 19 C -0.023 4.023 20 C -0.156 4.156 21 C 0.041 3.959 22 C 0.017 3.983 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.140 4.140 26 N -0.272 5.272 27 N -0.382 5.382 28 H 0.445 0.555 29 C 0.098 3.902 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.000 1.000 33 H 0.253 0.747 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.093 0.907 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 -23.093 -4.445 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.311 5.311 3 C -0.388 4.388 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.085 0.915 13 C -0.172 4.172 14 C -0.168 4.168 15 C -0.030 4.030 16 N -0.335 5.335 17 C 0.370 3.630 18 O -0.393 6.393 19 C -0.152 4.152 20 C -0.185 4.185 21 C -0.118 4.118 22 C 0.015 3.985 23 C -0.196 4.196 24 C -0.192 4.192 25 C -0.197 4.197 26 N -0.104 5.104 27 N -0.100 5.100 28 H 0.293 0.707 29 C -0.026 4.026 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.178 0.822 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.112 0.888 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.703 -23.335 -4.364 24.668 hybrid contribution 0.078 1.695 -0.038 1.697 sum 6.781 -21.640 -4.402 23.101 Atomic orbital electron populations 1.20787 0.82776 0.95626 0.99378 1.43857 1.01682 0.99986 1.85622 1.19161 0.99240 0.85446 1.34978 0.91457 1.25006 0.98262 0.98553 0.97531 1.70057 1.22072 1.27611 1.35081 0.86346 0.78357 0.83772 0.78153 1.20968 1.21658 1.20887 1.20499 0.96706 0.86360 0.90510 0.91539 1.22140 0.99325 0.94486 1.01239 1.21897 1.01414 0.97482 0.96035 1.22036 1.01129 0.94056 0.85758 1.48137 1.48897 1.19442 1.17026 1.17085 0.78533 0.84678 0.82664 1.90852 1.56062 1.56177 1.36211 1.21786 0.98174 0.89882 1.05340 1.21955 0.98066 0.94196 1.04246 1.21873 0.95344 0.93693 1.00891 1.18904 0.91206 0.92619 0.95754 1.21874 0.96107 1.02214 0.99403 1.21764 1.00720 0.94138 1.02555 1.21885 1.01579 1.02234 0.94048 1.73058 1.06032 1.12349 1.18980 1.44103 1.20536 1.03866 1.41543 0.70707 1.22431 0.96831 0.80696 1.02593 0.95039 0.94108 0.98154 0.93675 0.92389 0.91163 0.91045 0.91528 0.91028 0.90659 0.82158 0.92467 0.91940 0.92148 0.92528 0.92494 0.92035 0.92003 0.91915 0.92380 0.88829 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 8.07 59.84 0.48 4.23 16 2 N -0.59 -14.32 2.81 -173.60 -0.49 -14.80 16 3 C -0.26 -7.05 9.55 -15.06 -0.14 -7.20 16 4 H 0.07 1.83 7.85 -52.48 -0.41 1.41 16 5 C 0.01 0.15 5.03 -17.43 -0.09 0.06 16 6 N -0.90 -25.94 10.96 55.49 0.61 -25.33 16 7 Si 0.90 21.87 29.58 -169.99 -5.03 16.84 16 8 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.17 3.33 2.73 -68.03 -0.19 3.15 16 12 H 0.07 1.42 7.87 -51.93 -0.41 1.01 16 13 C -0.13 -2.21 5.15 -26.68 -0.14 -2.35 16 14 C -0.13 -1.62 6.08 -26.61 -0.16 -1.79 16 15 C 0.09 1.04 5.33 -3.71 -0.02 1.02 16 16 N -0.60 -8.75 2.98 -174.40 -0.52 -9.27 16 17 C 0.58 9.15 7.63 -12.64 -0.10 9.05 16 18 O -0.52 -10.05 16.46 5.25 0.09 -9.96 16 19 C -0.02 -0.30 6.28 -82.06 -0.52 -0.82 16 20 C -0.16 -1.90 10.24 -38.99 -0.40 -2.30 16 21 C 0.04 0.44 5.64 -82.47 -0.47 -0.02 16 22 C 0.02 0.14 0.96 -155.66 -0.15 -0.01 16 23 C -0.14 -1.03 8.46 37.16 0.31 -0.71 16 24 C -0.13 -1.03 8.04 37.16 0.30 -0.74 16 25 C -0.14 -1.03 8.21 37.16 0.30 -0.73 16 26 N -0.27 -3.07 11.48 33.64 0.39 -2.68 16 27 N -0.38 -4.06 5.59 33.48 0.19 -3.87 16 28 H 0.45 3.62 6.99 -190.45 -1.33 2.29 16 29 C 0.10 1.72 5.78 -3.93 -0.02 1.69 16 30 H 0.03 0.80 7.38 -51.93 -0.38 0.42 16 31 H 0.04 1.04 7.41 -51.93 -0.38 0.66 16 32 H 0.00 0.00 6.35 -51.93 -0.33 -0.33 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.72 4.71 -51.93 -0.24 0.47 16 40 H 0.16 1.84 7.80 -52.48 -0.41 1.43 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 47 H 0.06 0.46 7.60 -51.93 -0.39 0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 51 H 0.07 1.15 6.47 -51.93 -0.34 0.81 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -31.60 395.42 -9.40 -41.00 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -9.60 Total: -0.41 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -0.98 Total: 2.54 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.17 Total: -55.96 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.60 -9.40 -41.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027475860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.213 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds