Wall clock time and date at job start Tue Mar 31 2020 20:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36939 * 119.99683 * 2 1 4 4 H 1.08003 * 119.99958 * 204.16269 * 3 2 1 5 5 C 1.38815 * 119.99935 * 24.16062 * 3 2 1 6 6 N 1.31614 * 120.00092 * 15.82976 * 5 3 2 7 7 Si 1.86803 * 119.99700 * 195.82425 * 5 3 2 8 8 H 1.48503 * 109.47237 * 60.00339 * 7 5 3 9 9 H 1.48495 * 109.46889 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47446 * 300.00188 * 7 5 3 11 11 C 1.46496 * 120.00408 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.49925 * 179.97438 * 11 2 1 13 13 C 1.53047 * 109.49282 * 299.99260 * 11 2 1 14 14 C 1.53045 * 109.53842 * 181.31558 * 13 11 2 15 15 C 1.53189 * 109.31333 * 298.63962 * 14 13 11 16 16 N 1.46928 * 108.77888 * 54.63147 * 15 14 13 17 17 C 1.34777 * 120.63082 * 126.36979 * 16 15 14 18 18 O 1.21632 * 119.99908 * 188.72543 * 17 16 15 19 19 C 1.47156 * 120.00126 * 8.72277 * 17 16 15 20 20 C 1.38402 * 126.89002 * 208.48182 * 19 17 16 21 21 C 1.39672 * 105.36559 * 180.02562 * 20 19 17 22 22 C 1.50697 * 126.07020 * 180.26130 * 21 20 19 23 23 C 1.53001 * 109.46888 * 74.71984 * 22 21 20 24 24 C 1.52999 * 109.47133 * 194.71971 * 22 21 20 25 25 C 1.53000 * 109.47302 * 314.72034 * 22 21 20 26 26 N 1.30865 * 107.86013 * 0.02562 * 21 20 19 27 27 N 1.28447 * 110.92682 * 359.97438 * 26 21 20 28 28 H 0.97000 * 125.18782 * 179.97438 * 27 26 21 29 29 C 1.46930 * 118.73700 * 306.64498 * 16 15 14 30 30 H 1.09004 * 109.46876 * 273.94451 * 1 2 3 31 31 H 1.08999 * 109.47727 * 33.94809 * 1 2 3 32 32 H 1.09000 * 109.46907 * 153.95328 * 1 2 3 33 33 H 0.96998 * 120.00120 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.45659 * 61.29980 * 13 11 2 35 35 H 1.08994 * 109.46239 * 301.33489 * 13 11 2 36 36 H 1.08995 * 109.49713 * 178.68068 * 14 13 11 37 37 H 1.09004 * 109.49260 * 58.58622 * 14 13 11 38 38 H 1.08998 * 109.58788 * 294.84476 * 15 14 13 39 39 H 1.09003 * 109.70733 * 174.48999 * 15 14 13 40 40 H 1.08004 * 127.31379 * 0.05024 * 20 19 17 41 41 H 1.09000 * 109.47198 * 59.99912 * 23 22 21 42 42 H 1.09001 * 109.46676 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47143 * 299.99529 * 23 22 21 44 44 H 1.09003 * 109.47152 * 60.00156 * 24 22 21 45 45 H 1.08995 * 109.47075 * 180.02562 * 24 22 21 46 46 H 1.09000 * 109.47017 * 300.00127 * 24 22 21 47 47 H 1.08996 * 109.46950 * 59.99860 * 25 22 21 48 48 H 1.09001 * 109.47298 * 180.02562 * 25 22 21 49 49 H 1.09003 * 109.47093 * 299.99911 * 25 22 21 50 50 H 1.09001 * 109.58066 * 173.14128 * 29 16 15 51 51 H 1.09000 * 109.58733 * 293.56848 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1586 1.2270 -0.3829 5 6 1.5466 2.3354 0.4920 6 7 0.4630 2.2444 1.2334 7 14 2.2735 4.0115 0.1021 8 1 2.2870 4.2151 -1.3689 9 1 1.4497 5.0690 0.7410 10 1 3.6617 4.0828 0.6244 11 6 2.1975 -1.2686 -0.0006 12 1 3.2692 -1.0699 -0.0009 13 6 1.8283 -2.0721 1.2486 14 6 2.6177 -3.3832 1.2658 15 6 2.2498 -4.2123 0.0313 16 7 2.4654 -3.3937 -1.1697 17 6 3.2365 -3.8448 -2.1788 18 8 3.5375 -3.1014 -3.0933 19 6 3.7143 -5.2366 -2.1743 20 6 4.8767 -5.7178 -2.7511 21 6 4.8850 -7.0879 -2.4794 22 6 5.9521 -8.0681 -2.8936 23 6 7.1884 -7.8787 -2.0124 24 6 5.4242 -9.4950 -2.7319 25 6 6.3269 -7.8258 -4.3571 26 7 3.8042 -7.3682 -1.7969 27 7 3.0988 -6.3129 -1.6007 28 1 2.2572 -6.2846 -1.1193 29 6 1.8293 -2.0715 -1.2469 30 1 -0.3633 0.0707 1.0253 31 1 -0.3634 0.8524 -0.5739 32 1 -0.3633 -0.9233 -0.4513 33 1 0.0414 3.0476 1.5769 34 1 0.7607 -2.2913 1.2369 35 1 2.0700 -1.4912 2.1386 36 1 2.3718 -3.9441 2.1674 37 1 3.6856 -3.1649 1.2523 38 1 1.2023 -4.5080 0.0887 39 1 2.8785 -5.1015 -0.0150 40 1 5.6198 -5.1537 -3.2953 41 1 6.9214 -8.0513 -0.9698 42 1 7.9600 -8.5880 -2.3117 43 1 7.5644 -6.8621 -2.1277 44 1 4.5434 -9.6300 -3.3597 45 1 6.1961 -10.2040 -3.0310 46 1 5.1572 -9.6676 -1.6893 47 1 6.7029 -6.8092 -4.4722 48 1 7.0983 -8.5351 -4.6568 49 1 5.4461 -7.9607 -4.9849 50 1 2.1826 -1.5475 -2.1350 51 1 0.7468 -2.1891 -1.2958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027475860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:17 Heat of formation + Delta-G solvation = 40.474523 kcal Electronic energy + Delta-G solvation = -29753.196938 eV Core-core repulsion = 25882.050067 eV Total energy + Delta-G solvation = -3871.146870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.76220 -41.13208 -38.97533 -37.85537 -36.86734 -34.13297 -32.99923 -32.14344 -32.03907 -30.30997 -28.15120 -28.04805 -28.03619 -26.85051 -25.46075 -23.98899 -23.44226 -23.07179 -21.66381 -20.57151 -19.72953 -19.02098 -18.62403 -17.60330 -17.20584 -16.84521 -16.63857 -16.04470 -15.84024 -15.70969 -15.41826 -15.17987 -14.93621 -14.81661 -14.65380 -14.54188 -14.32860 -14.08914 -13.81815 -13.75547 -13.06919 -12.95492 -12.92120 -12.81091 -12.56160 -12.47255 -12.37514 -12.32129 -12.20084 -12.01696 -11.97537 -11.87833 -11.84575 -11.77854 -11.47811 -11.44457 -11.23536 -10.68240 -10.26445 -10.11228 -9.83436 -8.77641 -7.86858 -5.35452 0.17721 1.43222 1.45967 1.46077 1.52240 1.59369 1.71337 2.12675 2.48530 3.18645 3.25831 3.45319 3.52107 3.82994 3.87943 3.92615 3.94867 4.10979 4.15916 4.23961 4.26742 4.36820 4.42725 4.47674 4.59786 4.67458 4.70857 4.74421 4.85263 4.87328 4.89235 4.94219 4.98830 5.06723 5.10857 5.11706 5.17411 5.22694 5.28160 5.29803 5.42698 5.44309 5.49479 5.50700 5.52732 5.62342 5.68596 5.94780 6.18762 6.30427 6.81682 6.96772 7.11980 7.82999 8.25748 9.15184 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023475 B = 0.002474 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.451481 B =11314.481103 C =11810.951548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.607 5.607 3 C -0.270 4.270 4 H 0.059 0.941 5 C -0.044 4.044 6 N -0.930 5.930 7 Si 0.963 3.037 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.277 1.277 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.092 3.908 16 N -0.598 5.598 17 C 0.586 3.414 18 O -0.566 6.566 19 C -0.035 4.035 20 C -0.161 4.161 21 C 0.040 3.960 22 C 0.014 3.986 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.139 4.139 26 N -0.271 5.271 27 N -0.367 5.367 28 H 0.457 0.543 29 C 0.114 3.886 30 H 0.010 0.990 31 H 0.011 0.989 32 H 0.037 0.963 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.161 0.839 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.828 -25.990 -4.246 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.329 5.329 3 C -0.400 4.400 4 H 0.077 0.923 5 C -0.240 4.240 6 N -0.575 5.575 7 Si 0.791 3.209 8 H -0.208 1.208 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.161 4.161 14 C -0.159 4.159 15 C -0.029 4.029 16 N -0.330 5.330 17 C 0.373 3.627 18 O -0.443 6.443 19 C -0.164 4.164 20 C -0.191 4.191 21 C -0.118 4.118 22 C 0.012 3.988 23 C -0.194 4.194 24 C -0.188 4.188 25 C -0.196 4.196 26 N -0.103 5.103 27 N -0.088 5.088 28 H 0.307 0.693 29 C -0.010 4.010 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.179 0.821 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.069 0.931 50 H 0.081 0.919 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.264 -26.292 -4.137 27.589 hybrid contribution -0.044 2.512 -0.118 2.515 sum 7.220 -23.780 -4.255 25.214 Atomic orbital electron populations 1.20536 0.82495 0.96146 0.97811 1.44041 1.02109 1.00831 1.85954 1.19384 0.99155 0.87106 1.34338 0.92279 1.25686 0.98967 1.01545 0.97838 1.70189 1.23209 1.27990 1.36134 0.85412 0.77792 0.79924 0.77748 1.20839 1.21589 1.20271 1.20611 0.94884 0.85502 0.93110 0.93987 1.21936 1.00419 0.95844 0.97916 1.21845 1.00065 0.95614 0.98394 1.22328 1.03702 0.93726 0.83189 1.48128 1.48258 1.18498 1.18123 1.17394 0.77782 0.85436 0.82041 1.90827 1.57808 1.57677 1.38015 1.21359 0.98984 0.88969 1.07084 1.22140 0.97983 0.94990 1.03954 1.22274 0.95670 0.93566 1.00276 1.19061 0.90850 0.92407 0.96434 1.21863 0.96096 1.02542 0.98858 1.21737 1.01029 0.94002 1.02030 1.21888 1.01834 1.02656 0.93260 1.73078 1.06159 1.12187 1.18889 1.44087 1.20764 1.02918 1.41014 0.69292 1.21959 0.97364 0.81878 0.99849 0.97214 0.97008 0.94480 0.94096 0.91613 0.93849 0.87527 0.92471 0.87740 0.88466 0.82099 0.93037 0.90022 0.92616 0.93288 0.90588 0.92627 0.92350 0.89973 0.93131 0.91887 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.35 8.07 127.77 1.03 9.38 16 2 N -0.61 -30.17 2.81 -703.15 -1.97 -32.14 16 3 C -0.27 -15.14 9.55 84.03 0.80 -14.33 16 4 H 0.06 3.33 7.85 -2.91 -0.02 3.31 16 5 C -0.04 -2.50 5.03 84.86 0.43 -2.08 16 6 N -0.93 -54.64 10.96 21.65 0.24 -54.40 16 7 Si 0.96 45.87 29.58 68.60 2.03 47.90 16 8 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 9 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 11 C 0.17 6.68 2.73 44.93 0.12 6.80 16 12 H 0.04 1.86 7.87 -2.39 -0.02 1.84 16 13 C -0.12 -3.95 5.15 30.62 0.16 -3.80 16 14 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 15 C 0.09 1.74 5.33 86.36 0.46 2.20 16 16 N -0.60 -16.65 2.98 -823.91 -2.45 -19.11 16 17 C 0.59 18.06 7.63 86.58 0.66 18.72 16 18 O -0.57 -22.48 16.46 -4.13 -0.07 -22.54 16 19 C -0.04 -0.87 6.28 40.78 0.26 -0.61 16 20 C -0.16 -3.77 10.24 22.66 0.23 -3.53 16 21 C 0.04 0.80 5.64 43.05 0.24 1.05 16 22 C 0.01 0.21 0.96 -52.93 -0.05 0.16 16 23 C -0.14 -1.71 8.46 71.98 0.61 -1.10 16 24 C -0.13 -1.69 8.04 71.98 0.58 -1.11 16 25 C -0.14 -1.78 8.21 71.98 0.59 -1.18 16 26 N -0.27 -5.44 11.48 -47.50 -0.55 -5.98 16 27 N -0.37 -6.86 5.59 -48.00 -0.27 -7.12 16 28 H 0.46 5.85 6.99 -220.00 -1.54 4.31 16 29 C 0.11 3.98 5.78 86.22 0.50 4.48 16 30 H 0.01 0.50 7.38 -2.38 -0.02 0.48 16 31 H 0.01 0.59 7.41 -2.39 -0.02 0.58 16 32 H 0.04 1.46 6.35 -2.39 -0.02 1.44 16 33 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 34 H 0.07 2.04 7.72 -2.39 -0.02 2.03 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 1.48 4.71 -2.39 -0.01 1.47 16 40 H 0.16 3.64 7.80 -2.91 -0.02 3.62 16 41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 47 H 0.06 0.78 7.60 -2.39 -0.02 0.77 16 48 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 2.62 7.00 -2.39 -0.02 2.60 16 51 H 0.08 2.58 6.47 -2.39 -0.02 2.57 16 Total: -1.00 -71.33 395.42 3.15 -68.19 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.62 Total: 12.68 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.80 Total: 12.53 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -5.00 Total: -118.76 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.07 Total: -22.54 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.33 3.15 -68.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027475860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.662 kcal (2) G-P(sol) polarization free energy of solvation -71.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds