Wall clock time and date at job start Tue Mar 31 2020 19:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 C 1.50699 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.38050 * 126.28983 * 270.00101 * 4 3 2 6 6 C 1.47433 * 126.41304 * 359.97438 * 5 4 3 7 7 O 1.21600 * 120.00021 * 326.68481 * 6 5 4 8 8 N 1.34770 * 119.99654 * 146.69294 * 6 5 4 9 9 C 1.46929 * 120.63451 * 355.36325 * 8 6 5 10 10 C 1.53189 * 108.77558 * 233.62831 * 9 8 6 11 11 C 1.53034 * 109.31725 * 305.36775 * 10 9 8 12 12 C 1.53357 * 109.60797 * 61.37171 * 11 10 9 13 13 H 1.08996 * 109.46847 * 58.55277 * 12 11 10 14 14 N 1.46504 * 109.68164 * 178.74887 * 12 11 10 15 15 C 1.46494 * 119.99897 * 59.75179 * 14 12 11 16 16 C 1.36934 * 119.99864 * 239.74959 * 14 12 11 17 17 H 1.08009 * 120.00072 * 18.52875 * 16 14 12 18 18 C 1.38807 * 120.00346 * 198.52744 * 16 14 12 19 19 N 1.31617 * 119.99787 * 15.83775 * 18 16 14 20 20 Si 1.86797 * 120.00185 * 195.84192 * 18 16 14 21 21 H 1.48504 * 109.47248 * 89.99924 * 20 18 16 22 22 H 1.48504 * 109.47323 * 209.99535 * 20 18 16 23 23 H 1.48496 * 109.47415 * 329.99888 * 20 18 16 24 24 C 1.46933 * 120.62803 * 175.38684 * 8 6 5 25 25 C 1.41287 * 107.16943 * 180.24607 * 5 4 3 26 26 N 1.30448 * 108.02080 * 359.61153 * 25 5 4 27 27 N 1.34253 * 126.29238 * 90.02292 * 4 3 2 28 28 C 1.46505 * 125.75463 * 359.95852 * 27 4 3 29 29 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47162 * 300.00294 * 1 2 3 31 31 H 1.09003 * 109.46740 * 59.99969 * 1 2 3 32 32 H 1.08996 * 109.47386 * 240.00049 * 2 1 3 33 33 H 1.09002 * 109.46856 * 119.99489 * 2 1 3 34 34 H 1.08996 * 109.47033 * 59.99833 * 3 2 1 35 35 H 1.09002 * 109.47272 * 300.00143 * 3 2 1 36 36 H 1.08995 * 109.58224 * 353.42008 * 9 8 6 37 37 H 1.09001 * 109.58232 * 113.70444 * 9 8 6 38 38 H 1.09006 * 109.49707 * 65.32143 * 10 9 8 39 39 H 1.09004 * 109.49767 * 185.41003 * 10 9 8 40 40 H 1.08998 * 109.46294 * 181.38394 * 11 10 9 41 41 H 1.08998 * 109.46069 * 301.34256 * 11 10 9 42 42 H 1.09000 * 109.47024 * 95.70280 * 15 14 12 43 43 H 1.09003 * 109.46974 * 215.70191 * 15 14 12 44 44 H 1.08995 * 109.47710 * 335.70063 * 15 14 12 45 45 H 0.97003 * 119.99980 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.58704 * 246.15437 * 24 8 6 47 47 H 1.08996 * 109.58469 * 6.43935 * 24 8 6 48 48 H 1.07995 * 125.98941 * 179.74080 * 25 5 4 49 49 H 1.09000 * 109.46703 * 89.99901 * 28 27 4 50 50 H 1.08990 * 109.47055 * 209.99878 * 28 27 4 51 51 H 1.09002 * 109.46630 * 329.99992 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3636 1.4428 1.1137 6 6 3.9247 1.4435 2.5212 7 8 2.9037 2.0223 2.8394 8 7 4.6551 0.8027 3.4551 9 6 5.8347 0.0147 3.0723 10 6 5.6908 -1.3985 3.6456 11 6 5.4564 -1.3109 5.1554 12 6 4.1576 -0.5435 5.4308 13 1 3.3254 -1.0507 4.9427 14 7 3.9160 -0.4845 6.8746 15 6 4.8981 0.1516 7.7561 16 6 2.7723 -1.0239 7.4000 17 1 2.2010 -1.7404 6.8284 18 6 2.3472 -0.6500 8.6674 19 7 2.8430 0.4284 9.2363 20 14 1.0715 -1.6772 9.5655 21 1 1.7546 -2.7195 10.3733 22 1 0.2722 -0.8023 10.4605 23 1 0.1736 -2.3266 8.5771 24 6 4.2866 0.8783 4.8754 25 6 5.6987 1.4486 0.6515 26 7 5.6743 1.4432 -0.6528 27 7 4.3421 1.4429 -1.0811 28 6 3.8911 1.4424 -2.4750 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 5.9026 -0.0368 1.9857 37 1 6.7332 0.4841 3.4729 38 1 4.8442 -1.8979 3.1743 39 1 6.6019 -1.9645 3.4511 40 1 5.3782 -2.3161 5.5697 41 1 6.2917 -0.7897 5.6229 42 1 4.6060 1.1857 7.9390 43 1 4.9393 -0.3872 8.7027 44 1 5.8795 0.1296 7.2825 45 1 2.5462 0.6895 10.1221 46 1 5.0587 1.4166 5.4251 47 1 3.3344 1.3987 4.9787 48 1 6.5843 1.4541 1.2696 49 1 3.7786 2.4699 -2.8208 50 1 4.6263 0.9289 -3.0945 51 1 2.9328 0.9279 -2.5466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027478870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:19 Heat of formation + Delta-G solvation = 62.786179 kcal Electronic energy + Delta-G solvation = -30327.656149 eV Core-core repulsion = 26457.476785 eV Total energy + Delta-G solvation = -3870.179364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.68622 -39.41502 -37.21196 -35.53111 -34.94478 -33.52103 -32.17539 -31.22495 -30.75341 -28.97126 -27.29725 -26.71256 -25.96633 -25.04385 -23.48086 -22.26254 -21.93248 -21.38438 -20.58128 -19.20381 -18.46413 -17.24470 -16.67859 -16.27373 -15.82490 -15.52755 -15.06455 -15.00811 -14.64040 -14.43144 -14.05603 -13.78243 -13.72933 -13.53431 -13.37607 -13.23072 -12.93641 -12.80359 -12.54920 -12.45020 -12.34410 -12.17759 -11.82051 -11.65121 -11.47151 -11.12481 -11.06213 -10.95474 -10.76888 -10.75611 -10.54879 -10.35234 -10.26897 -10.09875 -9.78265 -9.69900 -9.56813 -9.39651 -8.66109 -8.51674 -8.16363 -6.75080 -5.67541 -3.09669 1.47571 2.15159 2.18035 3.27147 3.42958 3.48930 3.50436 3.57701 4.23903 4.29032 4.54098 4.65303 4.76392 4.79951 4.86509 4.99918 5.04074 5.06592 5.13753 5.20828 5.26019 5.37390 5.42354 5.50061 5.52929 5.59448 5.63299 5.67453 5.71577 5.85130 5.92931 5.99584 6.05234 6.10454 6.12888 6.20423 6.28312 6.30520 6.46027 6.58460 6.68738 6.76531 6.86332 7.00077 7.07377 7.41860 7.44402 7.76176 7.83227 7.86793 8.42184 8.59368 9.28013 9.91832 10.38798 11.37430 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.003249 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.194640 B = 8616.605002 C = 9699.285029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.070 4.070 4 C 0.152 3.848 5 C -0.283 4.283 6 C 0.591 3.409 7 O -0.545 6.545 8 N -0.600 5.600 9 C 0.099 3.901 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.170 3.830 13 H 0.064 0.936 14 N -0.592 5.592 15 C 0.162 3.838 16 C -0.253 4.253 17 H 0.070 0.930 18 C 0.001 3.999 19 N -0.906 5.906 20 Si 0.904 3.096 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.280 1.280 24 C 0.100 3.900 25 C 0.079 3.921 26 N -0.302 5.302 27 N -0.365 5.365 28 C 0.097 3.903 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.000 1.000 45 H 0.252 0.748 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.192 0.808 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -0.099 -23.177 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.109 4.109 4 C 0.020 3.980 5 C -0.298 4.298 6 C 0.379 3.621 7 O -0.423 6.423 8 N -0.333 5.333 9 C -0.024 4.024 10 C -0.168 4.168 11 C -0.173 4.173 12 C 0.061 3.939 13 H 0.082 0.918 14 N -0.314 5.314 15 C 0.017 3.983 16 C -0.382 4.382 17 H 0.088 0.912 18 C -0.197 4.197 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.205 1.205 24 C -0.024 4.024 25 C -0.108 4.108 26 N -0.121 5.121 27 N -0.145 5.145 28 C -0.044 4.044 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.018 0.982 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.209 0.791 49 H 0.096 0.904 50 H 0.111 0.889 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.538 0.286 -24.024 24.451 hybrid contribution -0.892 -0.448 1.287 1.629 sum 3.645 -0.162 -22.738 23.028 Atomic orbital electron populations 1.21752 0.94813 1.02069 1.02204 1.21442 0.96518 0.94914 1.02403 1.20591 0.85932 0.99065 1.05302 1.21439 0.94462 0.95888 0.86186 1.20066 0.92871 1.22994 0.93862 1.17253 0.82931 0.78392 0.83504 1.90741 1.24719 1.45377 1.81477 1.48048 1.28363 1.49092 1.07820 1.22032 0.88005 0.91907 1.00460 1.21885 1.01677 0.95824 0.97436 1.22141 1.00037 1.01490 0.93642 1.20648 0.95074 0.92335 0.85861 0.91806 1.43969 1.20631 1.67518 0.99277 1.20797 0.87142 0.97602 0.92740 1.19256 1.01642 1.17709 0.99623 0.91233 1.24920 0.98945 0.96747 0.99127 1.70105 1.46145 1.22953 1.15955 0.86253 0.81011 0.79563 0.79730 1.21609 1.21828 1.20542 1.22514 1.01871 1.00597 0.77371 1.24130 0.97327 0.97567 0.91763 1.77157 0.96089 1.25659 1.13211 1.48274 1.04021 1.55979 1.06182 1.21928 1.01244 1.03680 0.77561 0.92371 0.91869 0.92842 0.92475 0.91103 0.86805 0.90583 0.89532 0.91637 0.91894 0.91391 0.91834 0.92275 0.95268 0.93790 0.98171 0.93798 0.92151 0.89014 0.79109 0.90438 0.88934 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.11 -1.13 5.92 -26.73 -0.16 -1.28 16 3 C -0.07 -0.74 5.00 -27.88 -0.14 -0.88 16 4 C 0.15 1.86 6.25 -81.60 -0.51 1.35 16 5 C -0.28 -3.98 5.44 -105.06 -0.57 -4.55 16 6 C 0.59 10.09 7.52 -12.52 -0.09 10.00 16 7 O -0.54 -11.16 14.80 5.28 0.08 -11.08 16 8 N -0.60 -9.76 2.97 -174.04 -0.52 -10.28 16 9 C 0.10 1.24 5.32 -3.71 -0.02 1.22 16 10 C -0.13 -1.69 6.08 -26.62 -0.16 -1.85 16 11 C -0.13 -2.22 5.14 -26.53 -0.14 -2.36 16 12 C 0.17 3.50 2.75 -67.65 -0.19 3.31 16 13 H 0.06 1.40 7.84 -51.93 -0.41 0.99 16 14 N -0.59 -14.78 2.83 -173.16 -0.49 -15.27 16 15 C 0.16 3.95 7.91 59.84 0.47 4.42 16 16 C -0.25 -7.01 9.64 -15.06 -0.15 -7.16 16 17 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 19 N -0.91 -26.65 10.61 55.49 0.59 -26.06 16 20 Si 0.90 22.18 29.58 -169.99 -5.03 17.15 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 C 0.10 1.96 5.79 -3.71 -0.02 1.94 16 25 C 0.08 0.96 9.56 -16.98 -0.16 0.79 16 26 N -0.30 -3.72 12.50 30.86 0.39 -3.33 16 27 N -0.36 -3.93 3.98 -63.34 -0.25 -4.19 16 28 C 0.10 0.59 11.06 59.85 0.66 1.25 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 1.51 6.53 -51.93 -0.34 1.18 16 35 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16 36 H 0.09 0.96 4.29 -51.93 -0.22 0.73 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 42 H 0.03 0.78 7.41 -51.93 -0.38 0.39 16 43 H 0.04 1.16 7.15 -51.93 -0.37 0.79 16 44 H 0.00 0.00 6.47 -51.93 -0.34 -0.34 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.06 1.19 7.51 -51.93 -0.39 0.80 16 47 H 0.09 2.12 6.99 -51.93 -0.36 1.75 16 48 H 0.19 1.83 6.74 -52.49 -0.35 1.48 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.37 7.62 -51.93 -0.40 -0.02 16 LS Contribution 395.61 15.07 5.96 5.96 Total: -1.00 -33.67 395.61 -8.67 -42.35 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -8.51 Total: -0.42 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.89 Total: 5.19 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.28 Total: -59.14 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.67 -8.67 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027478870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.133 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds