Wall clock time and date at job start Tue Mar 31 2020 19:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46956 * 2 1 4 4 C 1.50699 * 109.47160 * 179.97438 * 3 2 1 5 5 C 1.38050 * 126.28983 * 270.00101 * 4 3 2 6 6 C 1.47433 * 126.41304 * 359.97438 * 5 4 3 7 7 O 1.21600 * 120.00021 * 326.68481 * 6 5 4 8 8 N 1.34770 * 119.99654 * 146.69294 * 6 5 4 9 9 C 1.46929 * 120.63451 * 355.36325 * 8 6 5 10 10 C 1.53189 * 108.77558 * 233.62831 * 9 8 6 11 11 C 1.53034 * 109.31725 * 305.36775 * 10 9 8 12 12 C 1.53357 * 109.60797 * 61.37171 * 11 10 9 13 13 H 1.08996 * 109.46847 * 58.55277 * 12 11 10 14 14 N 1.46504 * 109.68164 * 178.74887 * 12 11 10 15 15 C 1.46494 * 119.99897 * 59.75179 * 14 12 11 16 16 C 1.36934 * 119.99864 * 239.74959 * 14 12 11 17 17 H 1.08009 * 120.00072 * 18.52875 * 16 14 12 18 18 C 1.38807 * 120.00346 * 198.52744 * 16 14 12 19 19 N 1.31617 * 119.99787 * 15.83775 * 18 16 14 20 20 Si 1.86797 * 120.00185 * 195.84192 * 18 16 14 21 21 H 1.48504 * 109.47248 * 89.99924 * 20 18 16 22 22 H 1.48504 * 109.47323 * 209.99535 * 20 18 16 23 23 H 1.48496 * 109.47415 * 329.99888 * 20 18 16 24 24 C 1.46933 * 120.62803 * 175.38684 * 8 6 5 25 25 C 1.41287 * 107.16943 * 180.24607 * 5 4 3 26 26 N 1.30448 * 108.02080 * 359.61153 * 25 5 4 27 27 N 1.34253 * 126.29238 * 90.02292 * 4 3 2 28 28 C 1.46505 * 125.75463 * 359.95852 * 27 4 3 29 29 H 1.08998 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47162 * 300.00294 * 1 2 3 31 31 H 1.09003 * 109.46740 * 59.99969 * 1 2 3 32 32 H 1.08996 * 109.47386 * 240.00049 * 2 1 3 33 33 H 1.09002 * 109.46856 * 119.99489 * 2 1 3 34 34 H 1.08996 * 109.47033 * 59.99833 * 3 2 1 35 35 H 1.09002 * 109.47272 * 300.00143 * 3 2 1 36 36 H 1.08995 * 109.58224 * 353.42008 * 9 8 6 37 37 H 1.09001 * 109.58232 * 113.70444 * 9 8 6 38 38 H 1.09006 * 109.49707 * 65.32143 * 10 9 8 39 39 H 1.09004 * 109.49767 * 185.41003 * 10 9 8 40 40 H 1.08998 * 109.46294 * 181.38394 * 11 10 9 41 41 H 1.08998 * 109.46069 * 301.34256 * 11 10 9 42 42 H 1.09000 * 109.47024 * 95.70280 * 15 14 12 43 43 H 1.09003 * 109.46974 * 215.70191 * 15 14 12 44 44 H 1.08995 * 109.47710 * 335.70063 * 15 14 12 45 45 H 0.97003 * 119.99980 * 180.02562 * 19 18 16 46 46 H 1.08996 * 109.58704 * 246.15437 * 24 8 6 47 47 H 1.08996 * 109.58469 * 6.43935 * 24 8 6 48 48 H 1.07995 * 125.98941 * 179.74080 * 25 5 4 49 49 H 1.09000 * 109.46703 * 89.99901 * 28 27 4 50 50 H 1.08990 * 109.47055 * 209.99878 * 28 27 4 51 51 H 1.09002 * 109.46630 * 329.99992 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.3636 1.4428 1.1137 6 6 3.9247 1.4435 2.5212 7 8 2.9037 2.0223 2.8394 8 7 4.6551 0.8027 3.4551 9 6 5.8347 0.0147 3.0723 10 6 5.6908 -1.3985 3.6456 11 6 5.4564 -1.3109 5.1554 12 6 4.1576 -0.5435 5.4308 13 1 3.3254 -1.0507 4.9427 14 7 3.9160 -0.4845 6.8746 15 6 4.8981 0.1516 7.7561 16 6 2.7723 -1.0239 7.4000 17 1 2.2010 -1.7404 6.8284 18 6 2.3472 -0.6500 8.6674 19 7 2.8430 0.4284 9.2363 20 14 1.0715 -1.6772 9.5655 21 1 1.7546 -2.7195 10.3733 22 1 0.2722 -0.8023 10.4605 23 1 0.1736 -2.3266 8.5771 24 6 4.2866 0.8783 4.8754 25 6 5.6987 1.4486 0.6515 26 7 5.6743 1.4432 -0.6528 27 7 4.3421 1.4429 -1.0811 28 6 3.8911 1.4424 -2.4750 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 1.9564 -0.8900 36 1 5.9026 -0.0368 1.9857 37 1 6.7332 0.4841 3.4729 38 1 4.8442 -1.8979 3.1743 39 1 6.6019 -1.9645 3.4511 40 1 5.3782 -2.3161 5.5697 41 1 6.2917 -0.7897 5.6229 42 1 4.6060 1.1857 7.9390 43 1 4.9393 -0.3872 8.7027 44 1 5.8795 0.1296 7.2825 45 1 2.5462 0.6895 10.1221 46 1 5.0587 1.4166 5.4251 47 1 3.3344 1.3987 4.9787 48 1 6.5843 1.4541 1.2696 49 1 3.7786 2.4699 -2.8208 50 1 4.6263 0.9289 -3.0945 51 1 2.9328 0.9279 -2.5466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027478870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:17 Heat of formation + Delta-G solvation = 41.954735 kcal Electronic energy + Delta-G solvation = -30328.559469 eV Core-core repulsion = 26457.476785 eV Total energy + Delta-G solvation = -3871.082684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.63181 -40.74946 -38.73669 -36.84150 -36.18424 -34.45329 -33.72080 -32.79487 -31.72022 -30.54171 -28.28761 -28.03454 -27.46742 -26.30190 -25.21714 -23.37484 -22.93454 -22.60782 -21.61531 -20.60750 -19.69336 -18.81165 -18.27187 -17.26769 -17.03714 -16.83437 -16.51102 -16.07286 -15.77363 -15.66797 -15.50764 -15.18925 -14.99441 -14.72859 -14.52278 -14.35492 -14.10007 -13.92563 -13.83864 -13.56069 -13.42935 -13.41128 -13.13289 -12.89691 -12.80774 -12.47667 -12.45096 -12.24813 -12.18928 -12.11018 -12.05087 -11.99295 -11.69307 -11.61762 -11.57018 -11.37659 -10.83676 -10.62920 -10.32712 -9.76677 -9.47827 -8.78989 -7.82799 -5.27305 0.51570 1.15199 1.40525 1.45549 1.46428 1.55458 2.00909 2.33070 2.52040 3.29454 3.43603 3.46020 3.63647 3.84305 3.87482 4.02124 4.04818 4.12222 4.15302 4.18345 4.27881 4.38819 4.40177 4.40817 4.47193 4.57444 4.63287 4.66929 4.70855 4.73783 4.80311 4.87066 4.91580 4.93201 4.97883 5.06894 5.14499 5.16322 5.25914 5.29653 5.36726 5.37930 5.43877 5.55539 5.58164 5.65328 5.73967 5.88341 6.31282 6.49073 6.57107 7.14695 7.27124 7.87750 8.28838 9.20144 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014912 B = 0.003249 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.194640 B = 8616.605002 C = 9699.285029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.067 4.067 4 C 0.155 3.845 5 C -0.312 4.312 6 C 0.587 3.413 7 O -0.593 6.593 8 N -0.600 5.600 9 C 0.097 3.903 10 C -0.121 4.121 11 C -0.122 4.122 12 C 0.169 3.831 13 H 0.041 0.959 14 N -0.608 5.608 15 C 0.180 3.820 16 C -0.264 4.264 17 H 0.067 0.933 18 C -0.053 4.053 19 N -0.937 5.937 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.117 3.883 25 C 0.084 3.916 26 N -0.312 5.312 27 N -0.356 5.356 28 C 0.083 3.917 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.066 0.934 42 H -0.001 1.001 43 H 0.018 0.982 44 H 0.037 0.963 45 H 0.248 0.752 46 H 0.061 0.939 47 H 0.045 0.955 48 H 0.215 0.785 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -1.318 -26.473 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.106 4.106 4 C 0.021 3.979 5 C -0.327 4.327 6 C 0.378 3.622 7 O -0.474 6.474 8 N -0.332 5.332 9 C -0.025 4.025 10 C -0.159 4.159 11 C -0.161 4.161 12 C 0.061 3.939 13 H 0.059 0.941 14 N -0.331 5.331 15 C 0.035 3.965 16 C -0.394 4.394 17 H 0.085 0.915 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.796 3.204 21 H -0.209 1.209 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.008 4.008 25 C -0.102 4.102 26 N -0.132 5.132 27 N -0.135 5.135 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.017 0.983 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.231 0.769 49 H 0.112 0.888 50 H 0.124 0.876 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.005 -0.964 -27.398 28.065 hybrid contribution -1.359 -0.042 2.161 2.553 sum 4.646 -1.006 -25.237 25.681 Atomic orbital electron populations 1.21746 0.94089 1.02485 1.02347 1.21386 0.97105 0.94222 1.01941 1.20575 0.85180 0.99553 1.05276 1.21605 0.95074 0.94830 0.86409 1.19888 0.94486 1.26014 0.92300 1.17761 0.82156 0.77472 0.84847 1.90714 1.26897 1.47400 1.82415 1.48050 1.29505 1.49529 1.06075 1.22353 0.87036 0.91101 1.02000 1.21863 1.03293 0.96604 0.94147 1.21971 0.97316 1.00138 0.96667 1.20791 0.96659 0.93094 0.83365 0.94062 1.44186 1.20114 1.67548 1.01234 1.20506 0.88685 0.95243 0.92074 1.19555 1.02367 1.17548 0.99954 0.91528 1.25689 1.01312 0.97878 0.99964 1.70271 1.47723 1.24410 1.15960 0.85247 0.78732 0.77965 0.78408 1.20931 1.22219 1.19653 1.21967 0.99651 0.99264 0.79930 1.24412 0.97099 0.96856 0.91882 1.77131 0.97043 1.25897 1.13125 1.48625 1.03264 1.54280 1.07363 1.22396 1.02748 1.05351 0.75109 0.91832 0.94048 0.90368 0.90017 0.94337 0.90167 0.87206 0.87334 0.89121 0.92637 0.87438 0.92554 0.91488 0.98294 0.96362 0.94438 0.94288 0.92092 0.93605 0.76885 0.88849 0.87608 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.91 71.98 0.71 -1.78 16 2 C -0.11 -2.03 5.92 30.60 0.18 -1.84 16 3 C -0.07 -1.36 5.00 29.85 0.15 -1.21 16 4 C 0.15 3.56 6.25 42.14 0.26 3.83 16 5 C -0.31 -8.52 5.44 -20.15 -0.11 -8.63 16 6 C 0.59 20.64 7.52 86.67 0.65 21.30 16 7 O -0.59 -26.00 14.80 -4.03 -0.06 -26.06 16 8 N -0.60 -19.59 2.97 -822.79 -2.45 -22.04 16 9 C 0.10 2.17 5.32 86.36 0.46 2.63 16 10 C -0.12 -2.81 6.08 30.67 0.19 -2.62 16 11 C -0.12 -3.89 5.14 30.73 0.16 -3.73 16 12 C 0.17 7.13 2.75 45.17 0.12 7.25 16 13 H 0.04 1.90 7.84 -2.39 -0.02 1.88 16 14 N -0.61 -31.39 2.83 -701.77 -1.98 -33.38 16 15 C 0.18 9.02 7.91 127.77 1.01 10.03 16 16 C -0.26 -15.15 9.64 84.03 0.81 -14.34 16 17 H 0.07 3.77 7.80 -2.91 -0.02 3.74 16 18 C -0.05 -3.10 5.06 84.86 0.43 -2.67 16 19 N -0.94 -57.21 10.61 21.65 0.23 -56.98 16 20 Si 0.97 46.75 29.58 68.60 2.03 48.78 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 22 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.12 4.78 5.79 86.36 0.50 5.28 16 25 C 0.08 1.83 9.56 85.65 0.82 2.65 16 26 N -0.31 -6.81 12.50 -56.28 -0.70 -7.51 16 27 N -0.36 -6.66 3.98 -354.31 -1.41 -8.07 16 28 C 0.08 0.69 11.06 127.77 1.41 2.10 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 2.25 6.53 -2.39 -0.02 2.23 16 35 H 0.11 1.44 7.70 -2.39 -0.02 1.42 16 36 H 0.11 2.05 4.29 -2.39 -0.01 2.04 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.05 6.73 -2.39 -0.02 2.03 16 42 H 0.00 -0.07 7.41 -2.39 -0.02 -0.09 16 43 H 0.02 0.97 7.15 -2.39 -0.02 0.96 16 44 H 0.04 1.56 6.47 -2.39 -0.02 1.55 16 45 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.06 2.46 7.51 -2.39 -0.02 2.44 16 47 H 0.05 2.28 6.99 -2.39 -0.02 2.27 16 48 H 0.21 3.39 6.74 -2.91 -0.02 3.37 16 49 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.11 0.43 7.62 -2.39 -0.02 0.41 16 Total: -1.00 -78.70 395.61 4.33 -74.38 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.91 Total: 12.64 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 7.76 Total: 18.24 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -6.32 Total: -127.98 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.06 Total: -26.06 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -78.70 4.33 -74.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027478870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.332 kcal (2) G-P(sol) polarization free energy of solvation -78.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds