Wall clock time and date at job start Tue Mar 31 2020 20:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 C 1.50701 * 109.47322 * 239.99571 * 2 1 3 5 5 N 1.30502 * 125.64673 * 60.02477 * 4 2 1 6 6 C 1.34128 * 109.25243 * 179.97438 * 5 4 2 7 7 C 1.34666 * 108.02411 * 0.02562 * 6 5 4 8 8 N 1.35036 * 125.64935 * 239.71888 * 4 2 1 9 9 C 1.46503 * 126.39844 * 0.02562 * 8 4 2 10 10 C 1.50704 * 109.46717 * 85.00054 * 9 8 4 11 11 O 1.21278 * 120.00456 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99604 * 179.97438 * 10 9 8 13 13 C 1.46924 * 120.63147 * 359.72695 * 12 10 9 14 14 C 1.53625 * 108.54778 * 126.36577 * 13 12 10 15 15 C 1.53045 * 109.24131 * 54.85096 * 14 13 12 16 16 C 1.53041 * 109.53930 * 298.51674 * 15 14 13 17 17 H 1.09001 * 109.49333 * 301.41387 * 16 15 14 18 18 N 1.46502 * 109.52325 * 181.33247 * 16 15 14 19 19 C 1.46497 * 120.00202 * 300.14372 * 18 16 15 20 20 C 1.36933 * 119.99761 * 120.14402 * 18 16 15 21 21 H 1.08003 * 120.00401 * 22.00368 * 20 18 16 22 22 C 1.38817 * 120.00034 * 201.99927 * 20 18 16 23 23 N 1.31617 * 119.99640 * 12.68535 * 22 20 18 24 24 Si 1.86797 * 120.00328 * 192.68121 * 22 20 18 25 25 H 1.48501 * 109.46895 * 60.00166 * 24 22 20 26 26 H 1.48493 * 109.47224 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47179 * 300.00371 * 24 22 20 28 28 C 1.46928 * 120.63163 * 179.97438 * 12 10 9 29 29 H 1.08996 * 109.47262 * 300.00475 * 1 2 3 30 30 H 1.08994 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47196 * 60.00095 * 1 2 3 32 32 H 1.09007 * 109.46828 * 119.99549 * 2 1 3 33 33 H 1.08997 * 109.47447 * 60.00240 * 3 2 1 34 34 H 1.09002 * 109.46996 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47097 * 299.99245 * 3 2 1 36 36 H 1.07999 * 125.98658 * 179.97438 * 6 5 4 37 37 H 1.07991 * 126.59405 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.46682 * 204.99759 * 9 8 4 39 39 H 1.08990 * 109.47131 * 325.00435 * 9 8 4 40 40 H 1.09008 * 109.58320 * 246.19407 * 13 12 10 41 41 H 1.08998 * 109.58649 * 6.61748 * 13 12 10 42 42 H 1.08996 * 109.63063 * 294.86527 * 14 13 12 43 43 H 1.09001 * 109.45931 * 174.73826 * 14 13 12 44 44 H 1.08997 * 109.45691 * 178.49056 * 15 14 13 45 45 H 1.09000 * 109.45806 * 58.53633 * 15 14 13 46 46 H 1.08996 * 109.47347 * 94.32443 * 19 18 16 47 47 H 1.08993 * 109.47233 * 214.33411 * 19 18 16 48 48 H 1.09001 * 109.46811 * 334.33115 * 19 18 16 49 49 H 0.97000 * 120.00175 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.58369 * 353.38049 * 28 12 10 51 51 H 1.09001 * 109.58601 * 113.80137 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7864 -0.3619 -2.4637 6 6 2.3941 -1.2206 -3.2957 7 6 3.0408 -2.1365 -2.5497 8 7 2.8164 -1.8099 -1.2394 9 6 3.3280 -2.5224 -0.0660 10 6 2.2935 -3.5077 0.4138 11 8 1.2336 -3.6055 -0.1673 12 7 2.5468 -4.2810 1.4883 13 6 3.8289 -4.1790 2.1985 14 6 3.5443 -3.9320 3.6878 15 6 2.6204 -5.0328 4.2141 16 6 1.2913 -4.9910 3.4565 17 1 0.8308 -4.0112 3.5835 18 7 0.3954 -6.0242 3.9822 19 6 0.7914 -7.4336 3.9283 20 6 -0.8120 -5.6725 4.5239 21 1 -1.2676 -4.7292 4.2611 22 6 -1.4506 -6.5284 5.4108 23 7 -0.7985 -7.5497 5.9247 24 14 -3.2354 -6.2308 5.8749 25 1 -4.0796 -6.2838 4.6544 26 1 -3.6795 -7.2772 6.8303 27 1 -3.3656 -4.8945 6.5093 28 6 1.5480 -5.2457 1.9684 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3686 -1.1845 -4.3747 37 1 3.6273 -2.9665 -2.9149 38 1 4.2405 -3.0551 -0.3337 39 1 3.5442 -1.8073 0.7276 40 1 4.3873 -5.1076 2.0795 41 1 4.4064 -3.3484 1.7927 42 1 3.0625 -2.9623 3.8126 43 1 4.4816 -3.9469 4.2440 44 1 2.4376 -4.8760 5.2771 45 1 3.0922 -6.0042 4.0663 46 1 1.2620 -7.7151 4.8703 47 1 -0.0903 -8.0527 3.7633 48 1 1.4974 -7.5817 3.1111 49 1 -1.2448 -8.1480 6.5441 50 1 0.6201 -5.1191 1.4106 51 1 1.9239 -6.2596 1.8310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027600428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:44 Heat of formation + Delta-G solvation = 50.789713 kcal Electronic energy + Delta-G solvation = -30287.353097 eV Core-core repulsion = 26416.653526 eV Total energy + Delta-G solvation = -3870.699570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.26721 -40.05797 -37.60008 -35.42460 -35.22493 -34.10018 -32.45187 -31.41780 -29.40887 -28.83953 -27.72932 -27.20079 -26.06517 -25.00351 -23.61390 -22.91022 -21.79808 -21.41350 -20.24152 -19.07188 -18.71987 -17.65285 -17.21627 -16.79190 -15.92207 -15.51355 -15.10582 -14.94974 -14.69555 -14.33913 -14.22756 -13.96914 -13.85746 -13.68084 -13.45767 -13.29654 -13.06699 -12.91925 -12.76006 -12.49748 -12.33269 -12.19223 -12.04107 -11.57876 -11.25320 -11.17105 -11.05792 -11.03288 -10.90899 -10.72511 -10.50071 -10.40736 -10.30772 -10.21521 -9.97057 -9.95184 -9.82086 -9.42442 -8.70638 -8.47452 -8.36241 -6.82609 -5.76883 -3.23021 1.90385 2.44822 2.50765 3.05463 3.16972 3.37659 3.42863 3.45053 4.20998 4.26085 4.36666 4.45546 4.54772 4.61752 4.76055 4.93246 4.97913 5.04356 5.15549 5.15830 5.37276 5.40048 5.42128 5.44345 5.58049 5.59194 5.64521 5.72656 5.74274 5.82757 5.85482 5.88510 6.02824 6.10239 6.10734 6.25425 6.25839 6.30997 6.39040 6.49148 6.68306 6.73738 6.83468 6.90036 7.06564 7.33058 7.37738 7.66648 7.77204 8.06353 8.10127 8.34759 9.18644 9.80972 10.28549 11.27936 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.003124 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.490094 B = 8960.222166 C = 9763.777697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 C -0.138 4.138 4 C 0.231 3.769 5 N -0.488 5.488 6 C -0.028 4.028 7 C -0.054 4.054 8 N -0.441 5.441 9 C 0.085 3.915 10 C 0.493 3.507 11 O -0.520 6.520 12 N -0.601 5.601 13 C 0.105 3.895 14 C -0.132 4.132 15 C -0.133 4.133 16 C 0.170 3.830 17 H 0.065 0.935 18 N -0.592 5.592 19 C 0.162 3.838 20 C -0.257 4.257 21 H 0.068 0.932 22 C 0.004 3.996 23 N -0.908 5.908 24 Si 0.905 3.095 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.097 3.903 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.030 0.970 47 H 0.044 0.956 48 H -0.003 1.003 49 H 0.253 0.747 50 H 0.090 0.910 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.637 11.565 -10.463 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.196 4.196 4 C -0.032 4.032 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.186 4.186 8 N -0.124 5.124 9 C -0.042 4.042 10 C 0.277 3.723 11 O -0.395 6.395 12 N -0.335 5.335 13 C -0.018 4.018 14 C -0.171 4.171 15 C -0.173 4.173 16 C 0.061 3.939 17 H 0.083 0.917 18 N -0.313 5.313 19 C 0.018 3.982 20 C -0.387 4.387 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.552 5.552 24 Si 0.735 3.265 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C -0.026 4.026 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.015 0.985 49 H 0.063 0.937 50 H 0.108 0.892 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.552 11.926 -10.789 21.031 hybrid contribution -0.237 -1.015 0.621 1.213 sum 13.315 10.911 -10.168 19.993 Atomic orbital electron populations 1.21757 0.92651 1.02986 1.02364 1.19540 0.97254 0.95359 0.90673 1.21787 1.00639 0.94403 1.02814 1.23162 0.95785 0.88590 0.95655 1.70173 1.23222 1.28251 0.98931 1.22199 1.01101 0.94804 0.99447 1.22591 1.09034 1.04321 0.82614 1.44889 1.39141 1.22479 1.05848 1.21750 0.97403 0.96293 0.88802 1.20575 0.88503 0.82078 0.81107 1.90791 1.25335 1.67659 1.55699 1.48209 1.17689 1.39164 1.28458 1.21918 0.84708 1.01818 0.93404 1.22011 1.00463 1.00503 0.94119 1.22136 0.96566 0.97292 1.01273 1.20550 0.90119 0.93771 0.89475 0.91718 1.43876 1.17207 1.00903 1.69358 1.20794 0.97140 0.84336 0.95941 1.19185 0.94732 1.04718 1.20045 0.91422 1.24982 0.98797 0.98532 0.97093 1.70057 1.35106 1.17690 1.32392 0.86325 0.84929 0.77291 0.77957 1.20984 1.21605 1.20905 1.22491 0.91671 0.90590 0.97875 0.91920 0.92000 0.91544 0.90614 0.91792 0.92954 0.91319 0.81483 0.81205 0.86221 0.86328 0.90929 0.90687 0.91647 0.91073 0.91297 0.92383 0.95159 0.93728 0.98451 0.93674 0.89174 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.18 37.16 0.34 -1.39 16 2 C -0.01 -0.09 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 4 C 0.23 3.11 6.40 -155.42 -0.99 2.12 16 5 N -0.49 -7.20 11.25 -10.82 -0.12 -7.32 16 6 C -0.03 -0.36 11.87 -17.81 -0.21 -0.57 16 7 C -0.05 -0.62 11.58 -16.56 -0.19 -0.82 16 8 N -0.44 -5.37 2.24 -115.19 -0.26 -5.63 16 9 C 0.08 0.80 4.52 -5.19 -0.02 0.78 16 10 C 0.49 6.81 7.77 -10.98 -0.09 6.72 16 11 O -0.52 -9.73 15.83 5.56 0.09 -9.65 16 12 N -0.60 -7.97 2.97 -172.52 -0.51 -8.49 16 13 C 0.10 0.98 6.37 -3.49 -0.02 0.96 16 14 C -0.13 -1.45 6.10 -26.38 -0.16 -1.61 16 15 C -0.13 -2.12 5.14 -26.69 -0.14 -2.25 16 16 C 0.17 3.27 2.74 -67.83 -0.19 3.08 16 17 H 0.06 1.32 7.86 -51.93 -0.41 0.92 16 18 N -0.59 -14.24 2.82 -173.38 -0.49 -14.73 16 19 C 0.16 3.83 8.03 59.85 0.48 4.31 16 20 C -0.26 -6.96 9.60 -15.06 -0.14 -7.11 16 21 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.00 0.12 5.10 -17.43 -0.09 0.03 16 23 N -0.91 -25.90 10.64 55.49 0.59 -25.31 16 24 Si 0.91 21.81 29.57 -169.99 -5.03 16.78 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.10 1.67 5.78 -3.73 -0.02 1.65 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.81 6.85 -51.92 -0.36 0.45 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 0.76 7.93 -51.93 -0.41 0.35 16 39 H 0.12 0.85 6.85 -51.93 -0.36 0.49 16 40 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.07 0.45 5.93 -51.93 -0.31 0.14 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 46 H 0.03 0.77 7.41 -51.93 -0.38 0.38 16 47 H 0.04 1.16 7.21 -51.93 -0.37 0.78 16 48 H 0.00 -0.06 6.36 -51.93 -0.33 -0.39 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.09 1.83 7.01 -51.93 -0.36 1.46 16 51 H 0.07 1.13 6.50 -51.93 -0.34 0.79 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -33.98 400.51 -9.75 -43.72 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.65 Total: 0.01 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.40 Total: 4.58 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.79 Total: -61.48 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.98 -9.75 -43.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027600428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.512 kcal (2) G-P(sol) polarization free energy of solvation -33.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds