Wall clock time and date at job start Tue Mar 31 2020 20:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46925 * 2 1 4 4 C 1.50701 * 109.47322 * 239.99571 * 2 1 3 5 5 N 1.30502 * 125.64673 * 60.02477 * 4 2 1 6 6 C 1.34128 * 109.25243 * 179.97438 * 5 4 2 7 7 C 1.34666 * 108.02411 * 0.02562 * 6 5 4 8 8 N 1.35036 * 125.64935 * 239.71888 * 4 2 1 9 9 C 1.46503 * 126.39844 * 0.02562 * 8 4 2 10 10 C 1.50704 * 109.46717 * 85.00054 * 9 8 4 11 11 O 1.21278 * 120.00456 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99604 * 179.97438 * 10 9 8 13 13 C 1.46924 * 120.63147 * 359.72695 * 12 10 9 14 14 C 1.53625 * 108.54778 * 126.36577 * 13 12 10 15 15 C 1.53045 * 109.24131 * 54.85096 * 14 13 12 16 16 C 1.53041 * 109.53930 * 298.51674 * 15 14 13 17 17 H 1.09001 * 109.49333 * 301.41387 * 16 15 14 18 18 N 1.46502 * 109.52325 * 181.33247 * 16 15 14 19 19 C 1.46497 * 120.00202 * 300.14372 * 18 16 15 20 20 C 1.36933 * 119.99761 * 120.14402 * 18 16 15 21 21 H 1.08003 * 120.00401 * 22.00368 * 20 18 16 22 22 C 1.38817 * 120.00034 * 201.99927 * 20 18 16 23 23 N 1.31617 * 119.99640 * 12.68535 * 22 20 18 24 24 Si 1.86797 * 120.00328 * 192.68121 * 22 20 18 25 25 H 1.48501 * 109.46895 * 60.00166 * 24 22 20 26 26 H 1.48493 * 109.47224 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47179 * 300.00371 * 24 22 20 28 28 C 1.46928 * 120.63163 * 179.97438 * 12 10 9 29 29 H 1.08996 * 109.47262 * 300.00475 * 1 2 3 30 30 H 1.08994 * 109.47233 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47196 * 60.00095 * 1 2 3 32 32 H 1.09007 * 109.46828 * 119.99549 * 2 1 3 33 33 H 1.08997 * 109.47447 * 60.00240 * 3 2 1 34 34 H 1.09002 * 109.46996 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47097 * 299.99245 * 3 2 1 36 36 H 1.07999 * 125.98658 * 179.97438 * 6 5 4 37 37 H 1.07991 * 126.59405 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.46682 * 204.99759 * 9 8 4 39 39 H 1.08990 * 109.47131 * 325.00435 * 9 8 4 40 40 H 1.09008 * 109.58320 * 246.19407 * 13 12 10 41 41 H 1.08998 * 109.58649 * 6.61748 * 13 12 10 42 42 H 1.08996 * 109.63063 * 294.86527 * 14 13 12 43 43 H 1.09001 * 109.45931 * 174.73826 * 14 13 12 44 44 H 1.08997 * 109.45691 * 178.49056 * 15 14 13 45 45 H 1.09000 * 109.45806 * 58.53633 * 15 14 13 46 46 H 1.08996 * 109.47347 * 94.32443 * 19 18 16 47 47 H 1.08993 * 109.47233 * 214.33411 * 19 18 16 48 48 H 1.09001 * 109.46811 * 334.33115 * 19 18 16 49 49 H 0.97000 * 120.00175 * 180.02562 * 23 22 20 50 50 H 1.09007 * 109.58369 * 353.38049 * 28 12 10 51 51 H 1.09001 * 109.58601 * 113.80137 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7864 -0.3619 -2.4637 6 6 2.3941 -1.2206 -3.2957 7 6 3.0408 -2.1365 -2.5497 8 7 2.8164 -1.8099 -1.2394 9 6 3.3280 -2.5224 -0.0660 10 6 2.2935 -3.5077 0.4138 11 8 1.2336 -3.6055 -0.1673 12 7 2.5468 -4.2810 1.4883 13 6 3.8289 -4.1790 2.1985 14 6 3.5443 -3.9320 3.6878 15 6 2.6204 -5.0328 4.2141 16 6 1.2913 -4.9910 3.4565 17 1 0.8308 -4.0112 3.5835 18 7 0.3954 -6.0242 3.9822 19 6 0.7914 -7.4336 3.9283 20 6 -0.8120 -5.6725 4.5239 21 1 -1.2676 -4.7292 4.2611 22 6 -1.4506 -6.5284 5.4108 23 7 -0.7985 -7.5497 5.9247 24 14 -3.2354 -6.2308 5.8749 25 1 -4.0796 -6.2838 4.6544 26 1 -3.6795 -7.2772 6.8303 27 1 -3.3656 -4.8945 6.5093 28 6 1.5480 -5.2457 1.9684 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.3686 -1.1845 -4.3747 37 1 3.6273 -2.9665 -2.9149 38 1 4.2405 -3.0551 -0.3337 39 1 3.5442 -1.8073 0.7276 40 1 4.3873 -5.1076 2.0795 41 1 4.4064 -3.3484 1.7927 42 1 3.0625 -2.9623 3.8126 43 1 4.4816 -3.9469 4.2440 44 1 2.4376 -4.8760 5.2771 45 1 3.0922 -6.0042 4.0663 46 1 1.2620 -7.7151 4.8703 47 1 -0.0903 -8.0527 3.7633 48 1 1.4974 -7.5817 3.1111 49 1 -1.2448 -8.1480 6.5441 50 1 0.6201 -5.1191 1.4106 51 1 1.9239 -6.2596 1.8310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027600428.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:42 Heat of formation + Delta-G solvation = 30.349128 kcal Electronic energy + Delta-G solvation = -30288.239467 eV Core-core repulsion = 26416.653526 eV Total energy + Delta-G solvation = -3871.585941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.15986 -41.18730 -38.95604 -36.81679 -36.28776 -35.05433 -33.95383 -32.87222 -30.84590 -29.79331 -28.76326 -28.07406 -28.06373 -26.10768 -25.23779 -23.81269 -23.06468 -22.34905 -21.46185 -20.27564 -19.74660 -18.85819 -18.55628 -18.14502 -17.19129 -16.67921 -16.53730 -15.98798 -15.85206 -15.59137 -15.36595 -15.24269 -15.14147 -14.66054 -14.57569 -14.47211 -14.27050 -14.10906 -13.85045 -13.71253 -13.64531 -13.30986 -13.02973 -12.88309 -12.83358 -12.53217 -12.41690 -12.31687 -12.16866 -12.14573 -11.95656 -11.91088 -11.81270 -11.72990 -11.41217 -11.33566 -10.91362 -10.69543 -10.42759 -9.77197 -9.25687 -8.79112 -7.86633 -5.34078 0.97990 1.41678 1.43831 1.45049 1.51289 1.67484 2.06438 2.22772 2.48083 3.26422 3.32679 3.41027 3.60133 3.69755 3.75862 3.96689 4.00094 4.05653 4.11676 4.14527 4.18105 4.21024 4.34300 4.36515 4.59213 4.60114 4.71593 4.73175 4.75102 4.77175 4.85781 4.88095 4.89561 4.94808 5.01300 5.05032 5.15914 5.25554 5.27648 5.31561 5.41229 5.42211 5.47120 5.50265 5.61527 5.70634 5.88036 6.16470 6.29240 6.37760 7.02603 7.12030 7.18549 7.83811 8.25157 9.15656 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.003124 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.490094 B = 8960.222166 C = 9763.777697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.009 4.009 3 C -0.130 4.130 4 C 0.213 3.787 5 N -0.522 5.522 6 C -0.056 4.056 7 C -0.049 4.049 8 N -0.446 5.446 9 C 0.089 3.911 10 C 0.490 3.510 11 O -0.579 6.579 12 N -0.598 5.598 13 C 0.101 3.899 14 C -0.124 4.124 15 C -0.124 4.124 16 C 0.169 3.831 17 H 0.044 0.956 18 N -0.610 5.610 19 C 0.181 3.819 20 C -0.268 4.268 21 H 0.061 0.939 22 C -0.046 4.046 23 N -0.933 5.933 24 Si 0.963 3.037 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.275 1.275 28 C 0.114 3.886 29 H 0.080 0.920 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.183 0.817 37 H 0.203 0.797 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.040 0.960 45 H 0.058 0.942 46 H 0.008 0.992 47 H 0.011 0.989 48 H 0.031 0.969 49 H 0.249 0.751 50 H 0.050 0.950 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.987 12.890 -10.687 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.188 4.188 4 C -0.050 4.050 5 N -0.241 5.241 6 C -0.203 4.203 7 C -0.181 4.181 8 N -0.128 5.128 9 C -0.037 4.037 10 C 0.277 3.723 11 O -0.458 6.458 12 N -0.331 5.331 13 C -0.020 4.020 14 C -0.162 4.162 15 C -0.164 4.164 16 C 0.061 3.939 17 H 0.062 0.938 18 N -0.333 5.333 19 C 0.036 3.964 20 C -0.398 4.398 21 H 0.079 0.921 22 C -0.241 4.241 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.201 1.201 28 C -0.011 4.011 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.200 0.800 37 H 0.220 0.780 38 H 0.184 0.816 39 H 0.170 0.830 40 H 0.109 0.891 41 H 0.144 0.856 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.059 0.941 45 H 0.077 0.923 46 H 0.027 0.973 47 H 0.030 0.970 48 H 0.049 0.951 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 16.967 13.285 -11.017 24.202 hybrid contribution -1.287 -1.419 0.630 2.017 sum 15.679 11.866 -10.387 22.238 Atomic orbital electron populations 1.21698 0.94099 1.00685 1.02800 1.19636 0.96034 0.96774 0.90502 1.21720 1.01296 0.92799 1.02951 1.23483 0.96265 0.89424 0.95804 1.70116 1.24234 1.29744 1.00042 1.22650 1.01799 0.95366 1.00477 1.23134 1.08247 1.04309 0.82393 1.45071 1.38846 1.22110 1.06744 1.22066 0.96722 0.95964 0.88935 1.21411 0.88580 0.81979 0.80288 1.90783 1.28146 1.69350 1.57561 1.48232 1.18141 1.38014 1.28680 1.22310 0.82968 1.04988 0.91748 1.21980 1.00526 0.98077 0.95627 1.21947 0.95592 0.99646 0.99167 1.20698 0.90949 0.91314 0.90958 0.93772 1.44080 1.17579 1.02066 1.69584 1.20487 0.96075 0.83884 0.95966 1.19430 0.96282 1.04394 1.19670 0.92116 1.25656 1.02238 0.98679 0.97573 1.70198 1.36214 1.18454 1.33088 0.85407 0.80707 0.77331 0.77415 1.21084 1.21569 1.20063 1.21892 0.91626 0.91849 0.95692 0.90098 0.95514 0.92480 0.89460 0.90050 0.91745 0.92747 0.79986 0.78047 0.81629 0.82990 0.89124 0.85552 0.91546 0.87627 0.94115 0.92346 0.97328 0.96982 0.95115 0.94159 0.93119 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 9.18 71.98 0.66 -2.73 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.24 16 3 C -0.13 -2.15 9.18 71.98 0.66 -1.49 16 4 C 0.21 5.49 6.40 138.13 0.88 6.37 16 5 N -0.52 -15.29 11.25 -188.14 -2.12 -17.41 16 6 C -0.06 -1.39 11.87 83.52 0.99 -0.40 16 7 C -0.05 -1.01 11.58 83.08 0.96 -0.05 16 8 N -0.45 -9.61 2.24 -518.34 -1.16 -10.77 16 9 C 0.09 1.26 4.52 85.63 0.39 1.65 16 10 C 0.49 12.37 7.77 87.66 0.68 13.05 16 11 O -0.58 -21.80 15.83 -3.02 -0.05 -21.85 16 12 N -0.60 -14.23 2.97 -818.13 -2.43 -16.66 16 13 C 0.10 1.34 6.37 86.51 0.55 1.89 16 14 C -0.12 -2.19 6.10 30.82 0.19 -2.00 16 15 C -0.12 -3.79 5.14 30.62 0.16 -3.63 16 16 C 0.17 6.53 2.74 45.05 0.12 6.65 16 17 H 0.04 1.86 7.86 -2.39 -0.02 1.84 16 18 N -0.61 -30.29 2.82 -702.44 -1.98 -32.27 16 19 C 0.18 8.76 8.03 127.77 1.03 9.79 16 20 C -0.27 -14.98 9.60 84.04 0.81 -14.18 16 21 H 0.06 3.40 7.81 -2.91 -0.02 3.37 16 22 C -0.05 -2.60 5.10 84.86 0.43 -2.16 16 23 N -0.93 -54.90 10.64 21.65 0.23 -54.67 16 24 Si 0.96 45.91 29.57 68.60 2.03 47.94 16 25 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.11 3.93 5.78 86.35 0.50 4.43 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.09 1.64 6.85 -2.38 -0.02 1.62 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.20 2.65 8.06 -2.92 -0.02 2.62 16 38 H 0.17 0.91 7.93 -2.39 -0.02 0.89 16 39 H 0.15 1.21 6.85 -2.39 -0.02 1.19 16 40 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.13 0.50 5.93 -2.39 -0.01 0.49 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.77 7.72 -2.39 -0.02 1.76 16 46 H 0.01 0.44 7.41 -2.39 -0.02 0.43 16 47 H 0.01 0.62 7.21 -2.39 -0.02 0.61 16 48 H 0.03 1.25 6.36 -2.39 -0.02 1.23 16 49 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 50 H 0.05 2.14 7.01 -2.38 -0.02 2.13 16 51 H 0.07 2.25 6.50 -2.39 -0.02 2.23 16 Total: -1.00 -81.60 400.51 4.40 -77.20 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.90 Total: 11.53 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 8.97 Total: 16.96 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -7.45 Total: -131.78 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -81.60 4.40 -77.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027600428.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.554 kcal (2) G-P(sol) polarization free energy of solvation -81.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds