Wall clock time and date at job start Tue Mar 31 2020 19:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 C 1.50708 * 109.46941 * 119.99973 * 2 1 3 5 5 C 1.39671 * 126.06750 * 274.99842 * 4 2 1 6 6 C 1.38407 * 105.35934 * 180.02562 * 5 4 2 7 7 C 1.47160 * 126.88692 * 180.02562 * 6 5 4 8 8 O 1.21621 * 120.00261 * 205.50771 * 7 6 5 9 9 N 1.34778 * 119.99908 * 25.50102 * 7 6 5 10 10 C 1.46935 * 120.62858 * 0.59318 * 9 7 6 11 11 C 1.53188 * 108.77259 * 126.41233 * 10 9 7 12 12 C 1.53041 * 109.32016 * 54.63176 * 11 10 9 13 13 C 1.53072 * 109.65693 * 298.70140 * 12 11 10 14 14 H 1.09004 * 109.39144 * 301.27564 * 13 12 11 15 15 N 1.46500 * 109.62428 * 181.16599 * 13 12 11 16 16 C 1.46500 * 119.99852 * 300.10574 * 15 13 12 17 17 C 1.36933 * 120.00047 * 120.10277 * 15 13 12 18 18 H 1.08000 * 119.99897 * 21.98284 * 17 15 13 19 19 C 1.38816 * 119.99906 * 201.97771 * 17 15 13 20 20 N 1.31614 * 119.99815 * 4.47299 * 19 17 15 21 21 Si 1.86800 * 119.99720 * 184.46672 * 19 17 15 22 22 H 1.48504 * 109.47136 * 90.00551 * 21 19 17 23 23 H 1.48505 * 109.47059 * 210.00163 * 21 19 17 24 24 H 1.48493 * 109.47360 * 330.00469 * 21 19 17 25 25 C 1.46930 * 120.63217 * 180.61107 * 9 7 6 26 26 N 1.36596 * 106.23031 * 0.26683 * 6 5 4 27 27 C 1.46505 * 125.19367 * 179.73916 * 26 6 5 28 28 N 1.28441 * 109.62109 * 359.55037 * 26 6 5 29 29 H 1.09011 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47250 * 299.99570 * 1 2 3 31 31 H 1.09000 * 109.47388 * 60.00435 * 1 2 3 32 32 H 1.09000 * 109.47330 * 239.99910 * 2 1 3 33 33 H 1.08996 * 109.47249 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47200 * 299.99999 * 3 2 1 35 35 H 1.09000 * 109.47074 * 59.99753 * 3 2 1 36 36 H 1.08000 * 127.31982 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.57978 * 246.19653 * 10 9 7 38 38 H 1.08997 * 109.58467 * 6.47540 * 10 9 7 39 39 H 1.09001 * 109.49598 * 174.58434 * 11 10 9 40 40 H 1.09002 * 109.49680 * 294.67807 * 11 10 9 41 41 H 1.09008 * 109.45347 * 58.64950 * 12 11 10 42 42 H 1.08999 * 109.46314 * 178.62456 * 12 11 10 43 43 H 1.09008 * 109.47037 * 95.86996 * 16 15 13 44 44 H 1.09001 * 109.47515 * 215.86865 * 16 15 13 45 45 H 1.09000 * 109.47438 * 335.87153 * 16 15 13 46 46 H 0.97006 * 119.99635 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58400 * 353.37741 * 25 9 7 48 48 H 1.08997 * 109.58209 * 113.66065 * 25 9 7 49 49 H 1.08999 * 109.47088 * 90.22796 * 27 26 6 50 50 H 1.08997 * 109.47270 * 210.23437 * 27 26 6 51 51 H 1.09002 * 109.46322 * 330.23408 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2136 -0.1405 2.4927 6 6 2.6859 -1.1657 3.2936 7 6 3.0349 -1.0826 4.7207 8 8 3.8414 -1.8591 5.1958 9 7 2.4609 -0.1458 5.5014 10 6 1.4753 0.7911 4.9448 11 6 0.2023 0.7300 5.7948 12 6 0.5590 0.9900 7.2602 13 6 1.5226 -0.0914 7.7552 14 1 1.0559 -1.0702 7.6447 15 7 1.8418 0.1424 9.1658 16 6 2.4782 1.3970 9.5747 17 6 1.5451 -0.8118 10.1021 18 1 1.4169 -1.8413 9.8021 19 6 1.4094 -0.4558 11.4370 20 7 1.4783 0.8100 11.7907 21 14 1.1287 -1.7734 12.7310 22 1 2.4381 -2.2465 13.2479 23 1 0.3307 -1.2077 13.8484 24 1 0.3944 -2.9133 12.1257 25 6 2.8092 -0.0416 6.9250 26 7 2.7682 -2.2690 2.4924 27 6 3.2287 -3.5919 2.9217 28 7 2.3766 -1.9707 1.3060 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.0253 0.8828 2.7822 37 1 1.8805 1.8028 4.9658 38 1 1.2448 0.5110 3.9169 39 1 -0.5011 1.4886 5.4515 40 1 -0.2512 -0.2567 5.7003 41 1 1.0350 1.9665 7.3502 42 1 -0.3485 0.9713 7.8637 43 1 1.7152 2.0975 9.9144 44 1 3.1790 1.2014 10.3863 45 1 3.0137 1.8257 8.7276 46 1 1.3831 1.0588 12.7235 47 1 3.4568 -0.8727 7.2044 48 1 3.3253 0.9010 7.1068 49 1 2.3787 -4.1754 3.2752 50 1 3.6968 -4.1041 2.0812 51 1 3.9533 -3.4801 3.7284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027638376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:40 Heat of formation + Delta-G solvation = 77.864838 kcal Electronic energy + Delta-G solvation = -30180.625458 eV Core-core repulsion = 26311.099953 eV Total energy + Delta-G solvation = -3869.525505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.76320 -39.79818 -37.50039 -36.15574 -35.22406 -32.84517 -32.24943 -31.55812 -30.90914 -28.57114 -27.42779 -26.96349 -26.04593 -25.60857 -23.72902 -23.12420 -22.16497 -21.52581 -20.58474 -19.11797 -18.64833 -17.22132 -16.76537 -16.65863 -16.33259 -15.72292 -15.09172 -14.84202 -14.68900 -14.41509 -14.35104 -13.89515 -13.78812 -13.55781 -13.49469 -13.21301 -12.75857 -12.73767 -12.63912 -12.59842 -12.35912 -12.21580 -11.94159 -11.63967 -11.42012 -11.36097 -11.05512 -10.99915 -10.80977 -10.75110 -10.47514 -10.34274 -10.30661 -10.15363 -9.96852 -9.89639 -9.73903 -9.15629 -8.94038 -8.62081 -8.41185 -6.79388 -5.72203 -3.19623 1.24689 2.23551 2.41301 3.07716 3.19328 3.38190 3.44356 3.45619 4.16615 4.33358 4.47744 4.64238 4.81178 4.93388 4.95813 5.03503 5.10251 5.16305 5.18813 5.31949 5.35146 5.38491 5.40608 5.44029 5.46728 5.52485 5.60200 5.61830 5.69412 5.75001 5.79603 5.83596 5.97780 6.02130 6.07422 6.14168 6.18764 6.32389 6.36279 6.47521 6.60206 6.61925 6.77523 6.90474 6.96536 7.45469 7.46269 7.74212 7.83428 7.94828 8.15671 8.39185 9.23787 9.84864 10.32395 11.31662 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002852 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.616510 B = 9814.555299 C =10549.516787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.144 4.144 4 C 0.032 3.968 5 C -0.198 4.198 6 C -0.021 4.021 7 C 0.584 3.416 8 O -0.543 6.543 9 N -0.583 5.583 10 C 0.073 3.927 11 C -0.131 4.131 12 C -0.133 4.133 13 C 0.171 3.829 14 H 0.064 0.936 15 N -0.594 5.594 16 C 0.165 3.835 17 C -0.253 4.253 18 H 0.069 0.931 19 C 0.002 3.998 20 N -0.911 5.911 21 Si 0.907 3.093 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.097 3.903 26 N -0.259 5.259 27 C 0.080 3.920 28 N -0.281 5.281 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.172 0.828 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.029 0.971 44 H 0.049 0.951 45 H -0.006 1.006 46 H 0.252 0.748 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 0.952 -23.392 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.227 4.227 6 C -0.151 4.151 7 C 0.371 3.629 8 O -0.422 6.422 9 N -0.315 5.315 10 C -0.049 4.049 11 C -0.169 4.169 12 C -0.173 4.173 13 C 0.061 3.939 14 H 0.082 0.918 15 N -0.316 5.316 16 C 0.021 3.979 17 C -0.382 4.382 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.557 5.557 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C -0.026 4.026 26 N -0.046 5.046 27 C -0.060 4.060 28 N -0.113 5.113 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.189 0.811 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.013 0.987 46 H 0.062 0.938 47 H 0.110 0.890 48 H 0.086 0.914 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.213 -0.536 -23.453 23.460 hybrid contribution -0.263 0.076 1.407 1.433 sum -0.476 -0.460 -22.046 22.056 Atomic orbital electron populations 1.21821 0.93910 1.02174 1.02124 1.19407 0.95639 0.94927 0.92900 1.21832 1.01388 0.94707 1.02266 1.21942 1.04202 0.90158 0.96225 1.22325 1.07444 1.00131 0.92773 1.21470 1.10122 0.89303 0.94160 1.16954 0.81313 0.81242 0.83424 1.90770 1.34865 1.41992 1.74548 1.47888 1.40924 1.32163 1.10536 1.22690 0.89222 0.93186 0.99779 1.21912 0.96298 1.02097 0.96630 1.22139 1.01061 1.00396 0.93682 1.20549 0.91263 0.97121 0.84964 0.91772 1.43895 1.69196 1.18044 1.00483 1.20850 0.95707 0.86982 0.94397 1.19261 1.42474 0.88776 0.87730 0.91330 1.25038 1.00553 0.96070 0.97868 1.70076 1.55019 1.14423 1.16170 0.86208 0.77807 0.80828 0.81418 1.21470 1.21676 1.20546 1.22547 1.00367 1.03012 0.76665 1.45515 1.44376 1.09718 1.04962 1.22398 1.01996 0.78809 1.02754 1.73093 1.17291 1.17871 1.03082 0.92560 0.92200 0.92056 0.89953 0.92390 0.91948 0.92087 0.81129 0.91132 0.87330 0.91113 0.91886 0.92364 0.91476 0.95265 0.93240 0.98739 0.93769 0.89034 0.91394 0.89913 0.88796 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.17 37.15 0.34 -0.68 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -0.95 8.79 37.16 0.33 -0.63 16 4 C 0.03 0.36 6.13 -82.47 -0.51 -0.15 16 5 C -0.20 -2.26 7.86 -38.98 -0.31 -2.57 16 6 C -0.02 -0.30 6.59 -82.06 -0.54 -0.84 16 7 C 0.58 9.38 7.58 -12.64 -0.10 9.28 16 8 O -0.54 -10.19 14.38 5.26 0.08 -10.11 16 9 N -0.58 -8.91 2.97 -174.13 -0.52 -9.43 16 10 C 0.07 0.87 5.46 -3.71 -0.02 0.85 16 11 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 12 C -0.13 -2.26 5.15 -26.67 -0.14 -2.40 16 13 C 0.17 3.42 2.74 -67.79 -0.19 3.23 16 14 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 15 N -0.59 -14.58 2.83 -173.32 -0.49 -15.07 16 16 C 0.16 3.98 8.00 59.85 0.48 4.46 16 17 C -0.25 -6.91 9.64 -15.06 -0.15 -7.06 16 18 H 0.07 1.86 7.79 -52.49 -0.41 1.45 16 19 C 0.00 0.07 5.27 -17.43 -0.09 -0.03 16 20 N -0.91 -26.20 10.22 55.49 0.57 -25.64 16 21 Si 0.91 21.92 29.56 -169.99 -5.02 16.90 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 C 0.10 1.76 5.78 -3.71 -0.02 1.74 16 26 N -0.26 -3.44 3.75 -63.88 -0.24 -3.68 16 27 C 0.08 0.85 11.09 59.85 0.66 1.52 16 28 N -0.28 -3.66 11.90 33.64 0.40 -3.26 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.38 7.37 -51.93 -0.38 -0.01 16 36 H 0.17 1.55 5.34 -52.49 -0.28 1.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 1.12 3.34 -51.93 -0.17 0.95 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.99 7.71 -51.92 -0.40 0.59 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.03 0.76 7.39 -51.92 -0.38 0.37 16 44 H 0.05 1.31 7.07 -51.93 -0.37 0.94 16 45 H -0.01 -0.12 6.37 -51.93 -0.33 -0.45 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 47 H 0.09 1.87 7.00 -51.93 -0.36 1.51 16 48 H 0.07 1.22 6.50 -51.93 -0.34 0.88 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.11 1.36 6.16 -51.93 -0.32 1.04 16 LS Contribution 391.55 15.07 5.90 5.90 Total: -1.00 -31.96 391.55 -8.40 -40.37 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.36 Total: -0.49 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.71 Total: 4.51 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.28 Total: -57.07 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.96 -8.40 -40.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027638376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.230 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds