Wall clock time and date at job start Tue Mar 31 2020 19:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47157 * 2 1 4 4 C 1.50708 * 109.46941 * 119.99973 * 2 1 3 5 5 C 1.39671 * 126.06750 * 274.99842 * 4 2 1 6 6 C 1.38407 * 105.35934 * 180.02562 * 5 4 2 7 7 C 1.47160 * 126.88692 * 180.02562 * 6 5 4 8 8 O 1.21621 * 120.00261 * 205.50771 * 7 6 5 9 9 N 1.34778 * 119.99908 * 25.50102 * 7 6 5 10 10 C 1.46935 * 120.62858 * 0.59318 * 9 7 6 11 11 C 1.53188 * 108.77259 * 126.41233 * 10 9 7 12 12 C 1.53041 * 109.32016 * 54.63176 * 11 10 9 13 13 C 1.53072 * 109.65693 * 298.70140 * 12 11 10 14 14 H 1.09004 * 109.39144 * 301.27564 * 13 12 11 15 15 N 1.46500 * 109.62428 * 181.16599 * 13 12 11 16 16 C 1.46500 * 119.99852 * 300.10574 * 15 13 12 17 17 C 1.36933 * 120.00047 * 120.10277 * 15 13 12 18 18 H 1.08000 * 119.99897 * 21.98284 * 17 15 13 19 19 C 1.38816 * 119.99906 * 201.97771 * 17 15 13 20 20 N 1.31614 * 119.99815 * 4.47299 * 19 17 15 21 21 Si 1.86800 * 119.99720 * 184.46672 * 19 17 15 22 22 H 1.48504 * 109.47136 * 90.00551 * 21 19 17 23 23 H 1.48505 * 109.47059 * 210.00163 * 21 19 17 24 24 H 1.48493 * 109.47360 * 330.00469 * 21 19 17 25 25 C 1.46930 * 120.63217 * 180.61107 * 9 7 6 26 26 N 1.36596 * 106.23031 * 0.26683 * 6 5 4 27 27 C 1.46505 * 125.19367 * 179.73916 * 26 6 5 28 28 N 1.28441 * 109.62109 * 359.55037 * 26 6 5 29 29 H 1.09011 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47250 * 299.99570 * 1 2 3 31 31 H 1.09000 * 109.47388 * 60.00435 * 1 2 3 32 32 H 1.09000 * 109.47330 * 239.99910 * 2 1 3 33 33 H 1.08996 * 109.47249 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.47200 * 299.99999 * 3 2 1 35 35 H 1.09000 * 109.47074 * 59.99753 * 3 2 1 36 36 H 1.08000 * 127.31982 * 0.02562 * 5 4 2 37 37 H 1.09002 * 109.57978 * 246.19653 * 10 9 7 38 38 H 1.08997 * 109.58467 * 6.47540 * 10 9 7 39 39 H 1.09001 * 109.49598 * 174.58434 * 11 10 9 40 40 H 1.09002 * 109.49680 * 294.67807 * 11 10 9 41 41 H 1.09008 * 109.45347 * 58.64950 * 12 11 10 42 42 H 1.08999 * 109.46314 * 178.62456 * 12 11 10 43 43 H 1.09008 * 109.47037 * 95.86996 * 16 15 13 44 44 H 1.09001 * 109.47515 * 215.86865 * 16 15 13 45 45 H 1.09000 * 109.47438 * 335.87153 * 16 15 13 46 46 H 0.97006 * 119.99635 * 179.97438 * 20 19 17 47 47 H 1.08999 * 109.58400 * 353.37741 * 25 9 7 48 48 H 1.08997 * 109.58209 * 113.66065 * 25 9 7 49 49 H 1.08999 * 109.47088 * 90.22796 * 27 26 6 50 50 H 1.08997 * 109.47270 * 210.23437 * 27 26 6 51 51 H 1.09002 * 109.46322 * 330.23408 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2136 -0.1405 2.4927 6 6 2.6859 -1.1657 3.2936 7 6 3.0349 -1.0826 4.7207 8 8 3.8414 -1.8591 5.1958 9 7 2.4609 -0.1458 5.5014 10 6 1.4753 0.7911 4.9448 11 6 0.2023 0.7300 5.7948 12 6 0.5590 0.9900 7.2602 13 6 1.5226 -0.0914 7.7552 14 1 1.0559 -1.0702 7.6447 15 7 1.8418 0.1424 9.1658 16 6 2.4782 1.3970 9.5747 17 6 1.5451 -0.8118 10.1021 18 1 1.4169 -1.8413 9.8021 19 6 1.4094 -0.4558 11.4370 20 7 1.4783 0.8100 11.7907 21 14 1.1287 -1.7734 12.7310 22 1 2.4381 -2.2465 13.2479 23 1 0.3307 -1.2077 13.8484 24 1 0.3944 -2.9133 12.1257 25 6 2.8092 -0.0416 6.9250 26 7 2.7682 -2.2690 2.4924 27 6 3.2287 -3.5919 2.9217 28 7 2.3766 -1.9707 1.3060 29 1 -0.3634 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.0253 0.8828 2.7822 37 1 1.8805 1.8028 4.9658 38 1 1.2448 0.5110 3.9169 39 1 -0.5011 1.4886 5.4515 40 1 -0.2512 -0.2567 5.7003 41 1 1.0350 1.9665 7.3502 42 1 -0.3485 0.9713 7.8637 43 1 1.7152 2.0975 9.9144 44 1 3.1790 1.2014 10.3863 45 1 3.0137 1.8257 8.7276 46 1 1.3831 1.0588 12.7235 47 1 3.4568 -0.8727 7.2044 48 1 3.3253 0.9010 7.1068 49 1 2.3787 -4.1754 3.2752 50 1 3.6968 -4.1041 2.0812 51 1 3.9533 -3.4801 3.7284 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027638376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:39 Heat of formation + Delta-G solvation = 59.168288 kcal Electronic energy + Delta-G solvation = -30181.436201 eV Core-core repulsion = 26311.099953 eV Total energy + Delta-G solvation = -3870.336248 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.71137 -41.07859 -38.93311 -37.06040 -36.67707 -34.26923 -33.25033 -32.92268 -32.27398 -30.12046 -28.08600 -28.03357 -27.71998 -26.81387 -25.37891 -24.06372 -23.20624 -22.97534 -21.57238 -20.51246 -19.66952 -18.87076 -18.26015 -17.71804 -17.35485 -17.14113 -16.56454 -16.11960 -15.83290 -15.59436 -15.40946 -15.15703 -14.99262 -14.78086 -14.59831 -14.40122 -14.19226 -13.97110 -13.70879 -13.66759 -13.47742 -13.35839 -12.89865 -12.79237 -12.78108 -12.49680 -12.28492 -12.26099 -12.18454 -12.03274 -11.95810 -11.93502 -11.80815 -11.66142 -11.41858 -11.32820 -11.12085 -10.66664 -10.18507 -9.83515 -9.76641 -8.78444 -7.83334 -5.32288 0.19791 1.24334 1.44236 1.45078 1.53269 1.53766 1.95549 2.02862 2.48811 3.23105 3.29864 3.40299 3.60538 3.88556 3.97325 4.03538 4.08433 4.15814 4.19817 4.22204 4.29584 4.35598 4.37709 4.45204 4.53789 4.57822 4.62962 4.68554 4.74734 4.77983 4.85596 4.92121 4.96567 5.00243 5.10432 5.13608 5.14295 5.26939 5.32847 5.38786 5.45704 5.47420 5.49984 5.51844 5.57965 5.62628 5.71330 5.78454 6.24802 6.31753 6.88877 7.05776 7.14913 7.85475 8.26768 9.18348 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.002852 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.616510 B = 9814.555299 C =10549.516787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.142 4.142 4 C 0.031 3.969 5 C -0.183 4.183 6 C -0.045 4.045 7 C 0.583 3.417 8 O -0.581 6.581 9 N -0.583 5.583 10 C 0.072 3.928 11 C -0.121 4.121 12 C -0.123 4.123 13 C 0.169 3.831 14 H 0.043 0.957 15 N -0.611 5.611 16 C 0.183 3.817 17 C -0.264 4.264 18 H 0.063 0.937 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.273 1.273 25 C 0.114 3.886 26 N -0.269 5.269 27 C 0.078 3.922 28 N -0.296 5.296 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.199 0.801 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.007 0.993 44 H 0.017 0.983 45 H 0.028 0.972 46 H 0.248 0.752 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.091 0.909 50 H 0.114 0.886 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 2.179 -26.080 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.125 4.125 5 C -0.211 4.211 6 C -0.174 4.174 7 C 0.370 3.630 8 O -0.461 6.461 9 N -0.314 5.314 10 C -0.048 4.048 11 C -0.159 4.159 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.061 0.939 15 N -0.334 5.334 16 C 0.039 3.961 17 C -0.394 4.394 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.198 1.198 25 C -0.010 4.010 26 N -0.056 5.056 27 C -0.062 4.062 28 N -0.129 5.129 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.216 0.784 37 H 0.115 0.885 38 H 0.149 0.851 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.036 0.964 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.109 0.891 50 H 0.133 0.867 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.270 0.693 -26.194 26.234 hybrid contribution 0.069 -0.337 2.130 2.158 sum -1.201 0.356 -24.064 24.096 Atomic orbital electron populations 1.21809 0.92933 1.01669 1.03332 1.19560 0.96342 0.95623 0.91341 1.21841 1.00935 0.93575 1.03647 1.22530 1.03125 0.89625 0.97269 1.22645 1.05627 1.00641 0.92205 1.21300 1.12222 0.90704 0.93168 1.17279 0.80702 0.80557 0.84421 1.90752 1.36536 1.43351 1.75506 1.47889 1.41538 1.32766 1.09164 1.22997 0.87843 0.93677 1.00298 1.21872 0.97540 1.02949 0.93557 1.21958 0.98943 0.99093 0.96261 1.20674 0.92797 0.97296 0.83137 0.93875 1.44080 1.69726 1.17604 1.01984 1.20538 0.94472 0.86542 0.94598 1.19507 1.41858 0.89297 0.88771 0.91913 1.25737 1.01002 0.97991 0.99640 1.70235 1.56112 1.15869 1.16115 0.85257 0.77517 0.78698 0.78896 1.21397 1.21669 1.19756 1.22052 0.98547 1.01969 0.78435 1.45733 1.44689 1.10196 1.04986 1.22472 1.02092 0.78491 1.03117 1.73109 1.17759 1.19048 1.02941 0.93925 0.91727 0.90153 0.90095 0.93127 0.90210 0.91151 0.78421 0.88532 0.85147 0.87413 0.92633 0.91868 0.93770 0.97458 0.96384 0.95370 0.94222 0.92061 0.90790 0.89082 0.86717 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.17 71.98 0.66 -0.89 16 2 C -0.01 -0.11 3.38 -11.54 -0.04 -0.15 16 3 C -0.14 -1.34 8.79 71.98 0.63 -0.71 16 4 C 0.03 0.62 6.13 43.05 0.26 0.89 16 5 C -0.18 -3.62 7.86 22.66 0.18 -3.44 16 6 C -0.05 -1.19 6.59 40.79 0.27 -0.92 16 7 C 0.58 18.46 7.58 86.59 0.66 19.11 16 8 O -0.58 -22.41 14.38 -4.10 -0.06 -22.47 16 9 N -0.58 -17.04 2.97 -823.06 -2.45 -19.49 16 10 C 0.07 1.46 5.46 86.36 0.47 1.93 16 11 C -0.12 -2.74 6.08 30.67 0.19 -2.55 16 12 C -0.12 -4.03 5.15 30.63 0.16 -3.88 16 13 C 0.17 6.83 2.74 45.08 0.12 6.95 16 14 H 0.04 1.90 7.86 -2.39 -0.02 1.88 16 15 N -0.61 -30.67 2.83 -702.26 -1.98 -32.65 16 16 C 0.18 8.98 8.00 127.77 1.02 10.00 16 17 C -0.26 -14.83 9.64 84.04 0.81 -14.02 16 18 H 0.06 3.51 7.79 -2.91 -0.02 3.49 16 19 C -0.05 -2.76 5.27 84.86 0.45 -2.32 16 20 N -0.94 -55.17 10.22 21.65 0.22 -54.95 16 21 Si 0.97 45.90 29.56 68.60 2.03 47.93 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 C 0.11 4.14 5.78 86.36 0.50 4.64 16 26 N -0.27 -6.90 3.75 -356.02 -1.33 -8.24 16 27 C 0.08 1.65 11.09 127.77 1.42 3.07 16 28 N -0.30 -7.24 11.90 -47.49 -0.57 -7.81 16 29 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.54 7.37 -2.39 -0.02 0.52 16 36 H 0.20 2.65 5.34 -2.91 -0.02 2.63 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.13 2.13 3.34 -2.39 -0.01 2.12 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 2.02 7.71 -2.38 -0.02 2.00 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.01 0.38 7.39 -2.38 -0.02 0.36 16 44 H 0.02 0.96 7.07 -2.39 -0.02 0.94 16 45 H 0.03 1.16 6.37 -2.39 -0.02 1.14 16 46 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 47 H 0.06 2.59 7.00 -2.39 -0.02 2.58 16 48 H 0.07 2.58 6.50 -2.39 -0.02 2.56 16 49 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.10 2.42 6.16 -2.39 -0.01 2.41 16 Total: -1.00 -72.19 391.55 4.53 -67.66 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.92 Total: 12.29 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 7.76 Total: 17.72 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -6.11 Total: -123.13 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.06 Total: -22.47 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -72.19 4.53 -67.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027638376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.824 kcal (2) G-P(sol) polarization free energy of solvation -72.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds