Wall clock time and date at job start Tue Mar 31 2020 20:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36946 * 119.99755 * 2 1 4 4 H 1.07993 * 119.99843 * 149.97999 * 3 2 1 5 5 C 1.38809 * 119.99697 * 329.97382 * 3 2 1 6 6 N 1.31619 * 119.99481 * 151.95855 * 5 3 2 7 7 Si 1.86796 * 120.00395 * 331.95979 * 5 3 2 8 8 H 1.48504 * 109.47012 * 94.58513 * 7 5 3 9 9 H 1.48497 * 109.47449 * 214.58433 * 7 5 3 10 10 H 1.48504 * 109.47287 * 334.58565 * 7 5 3 11 11 C 1.46494 * 120.00310 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49752 * 179.97438 * 11 2 1 13 13 C 1.53044 * 109.49922 * 299.99858 * 11 2 1 14 14 C 1.53032 * 109.54079 * 181.31493 * 13 11 2 15 15 C 1.53191 * 109.31654 * 298.63554 * 14 13 11 16 16 N 1.46932 * 108.77373 * 54.63510 * 15 14 13 17 17 C 1.34771 * 120.62935 * 126.37071 * 16 15 14 18 18 O 1.21605 * 119.99844 * 185.25041 * 17 16 15 19 19 C 1.47429 * 120.00345 * 4.97338 * 17 16 15 20 20 C 1.38037 * 126.41245 * 53.32410 * 19 17 16 21 21 N 1.34263 * 107.41720 * 179.83848 * 20 19 17 22 22 H 0.96997 * 125.76199 * 180.16266 * 21 20 19 23 23 N 1.39942 * 108.48790 * 0.42980 * 21 20 19 24 24 C 1.30442 * 108.89673 * 359.73077 * 23 21 20 25 25 C 1.50700 * 125.98866 * 179.97438 * 24 23 21 26 26 C 1.53000 * 109.47553 * 229.73659 * 25 24 23 27 27 C 1.53000 * 109.47219 * 349.73721 * 25 24 23 28 28 C 1.53007 * 109.47161 * 109.73511 * 25 24 23 29 29 C 1.46923 * 118.73447 * 306.64567 * 16 15 14 30 30 H 1.09000 * 109.47758 * 264.48574 * 1 2 3 31 31 H 1.09004 * 109.47560 * 24.48308 * 1 2 3 32 32 H 1.09005 * 109.47191 * 144.48819 * 1 2 3 33 33 H 0.97002 * 119.99707 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.45656 * 61.29338 * 13 11 2 35 35 H 1.08998 * 109.45965 * 301.34041 * 13 11 2 36 36 H 1.09004 * 109.50094 * 178.68666 * 14 13 11 37 37 H 1.08996 * 109.52386 * 58.60498 * 14 13 11 38 38 H 1.09003 * 109.58665 * 294.85413 * 15 14 13 39 39 H 1.09003 * 109.58827 * 174.42083 * 15 14 13 40 40 H 1.07998 * 126.29363 * 0.02562 * 20 19 17 41 41 H 1.09000 * 109.46762 * 53.87119 * 26 25 24 42 42 H 1.09001 * 109.47220 * 173.87830 * 26 25 24 43 43 H 1.09002 * 109.47017 * 293.87789 * 26 25 24 44 44 H 1.09008 * 109.46910 * 60.00190 * 27 25 24 45 45 H 1.08999 * 109.47506 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47423 * 300.00206 * 27 25 24 47 47 H 1.09006 * 109.46909 * 69.98488 * 28 25 24 48 48 H 1.08997 * 109.47291 * 189.98966 * 28 25 24 49 49 H 1.09000 * 109.47142 * 309.98943 * 28 25 24 50 50 H 1.09001 * 109.58575 * 173.14326 * 29 16 15 51 51 H 1.08997 * 109.58859 * 293.56566 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1209 1.2488 0.4679 5 6 1.5952 2.3074 -0.6016 6 7 1.9129 3.5099 -0.1710 7 14 0.3982 2.1099 -2.0219 8 1 -0.9931 2.1269 -1.5028 9 1 0.5816 3.2271 -2.9829 10 1 0.6543 0.8187 -2.7093 11 6 2.1975 -1.2686 0.0006 12 1 3.2692 -1.0699 0.0000 13 6 1.8283 -2.0712 1.2503 14 6 2.6176 -3.3821 1.2685 15 6 2.2497 -4.2123 0.0348 16 7 2.4654 -3.3946 -1.1669 17 6 3.2366 -3.8466 -2.1755 18 8 3.4854 -3.1239 -3.1214 19 6 3.7835 -5.2149 -2.1294 20 6 3.0657 -6.3781 -1.9367 21 7 3.9381 -7.3982 -1.9662 22 1 3.7168 -8.3367 -1.8603 23 7 5.2216 -6.8788 -2.1695 24 6 5.1412 -5.5806 -2.2679 25 6 6.2944 -4.6362 -2.4899 26 6 6.2308 -3.5033 -1.4636 27 6 7.6132 -5.3953 -2.3303 28 6 6.2102 -4.0512 -3.9012 29 6 1.8294 -2.0725 -1.2451 30 1 -0.3634 -0.0987 1.0229 31 1 -0.3634 0.9353 -0.4259 32 1 -0.3634 -0.8365 -0.5970 33 1 1.5252 4.2936 -0.5912 34 1 0.7605 -2.2903 1.2388 35 1 2.0698 -1.4894 2.1399 36 1 2.3716 -3.9424 2.1706 37 1 3.6855 -3.1644 1.2554 38 1 1.2021 -4.5078 0.0923 39 1 2.8803 -5.1003 -0.0095 40 1 1.9981 -6.4540 -1.7921 41 1 6.1810 -3.9249 -0.4597 42 1 7.1216 -2.8816 -1.5530 43 1 5.3442 -2.8963 -1.6470 44 1 7.6586 -6.2025 -3.0616 45 1 8.4474 -4.7124 -2.4913 46 1 7.6733 -5.8121 -1.3250 47 1 5.3635 -3.3673 -3.9611 48 1 7.1300 -3.5115 -4.1262 49 1 6.0770 -4.8583 -4.6216 50 1 2.1827 -1.5491 -2.1336 51 1 0.7469 -2.1901 -1.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027648325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:33 Heat of formation + Delta-G solvation = 63.219882 kcal Electronic energy + Delta-G solvation = -31090.177942 eV Core-core repulsion = 27220.017384 eV Total energy + Delta-G solvation = -3870.160558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.75152 -39.56952 -37.51584 -36.71009 -35.21560 -32.42887 -31.53005 -31.14248 -30.76697 -29.12664 -27.19576 -27.11340 -26.18490 -25.38307 -23.84647 -22.85173 -22.41738 -21.50613 -19.94401 -19.06775 -18.32745 -17.81573 -16.82477 -16.63174 -15.65545 -15.48457 -15.20764 -15.01056 -14.72353 -14.34956 -14.18721 -13.83379 -13.77339 -13.59249 -13.39294 -13.15951 -12.69862 -12.60204 -12.29369 -12.24620 -12.22497 -12.19398 -12.08571 -11.52026 -11.42869 -11.34914 -11.18022 -11.03470 -10.97293 -10.63536 -10.55039 -10.43768 -10.34593 -10.01307 -9.94507 -9.67378 -9.64700 -9.52856 -8.84023 -8.47177 -8.35820 -6.93001 -5.99268 -3.29873 1.46137 2.18395 2.49147 2.99908 3.32967 3.35571 3.52359 3.57504 4.23119 4.48030 4.55173 4.79406 4.82405 4.85754 5.00584 5.09569 5.16549 5.17734 5.29981 5.34812 5.35927 5.39688 5.49809 5.65747 5.68898 5.73570 5.78406 5.84282 5.87656 5.93478 5.99958 6.06563 6.07723 6.10191 6.12428 6.23940 6.33540 6.35030 6.39615 6.42938 6.49904 6.55298 6.71285 6.75752 6.88121 6.90280 6.91681 7.38541 7.66263 7.99967 8.34265 8.45438 8.97519 9.73059 10.09164 11.16472 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003689 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.972846 B = 7588.994247 C = 8192.567043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.600 5.600 3 C -0.268 4.268 4 H 0.083 0.917 5 C 0.034 3.966 6 N -0.894 5.894 7 Si 0.872 3.128 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.269 1.269 11 C 0.168 3.832 12 H 0.074 0.926 13 C -0.131 4.131 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.602 5.602 17 C 0.592 3.408 18 O -0.530 6.530 19 C -0.268 4.268 20 C 0.092 3.908 21 N -0.467 5.467 22 H 0.442 0.558 23 N -0.294 5.294 24 C 0.140 3.860 25 C 0.012 3.988 26 C -0.143 4.143 27 C -0.135 4.135 28 C -0.148 4.148 29 C 0.094 3.906 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.183 0.817 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.093 0.907 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -23.764 -0.504 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.323 5.323 3 C -0.396 4.396 4 H 0.100 0.900 5 C -0.166 4.166 6 N -0.535 5.535 7 Si 0.703 3.297 8 H -0.216 1.216 9 H -0.230 1.230 10 H -0.194 1.194 11 C 0.059 3.941 12 H 0.092 0.908 13 C -0.170 4.170 14 C -0.169 4.169 15 C -0.015 4.015 16 N -0.335 5.335 17 C 0.379 3.621 18 O -0.407 6.407 19 C -0.283 4.283 20 C -0.059 4.059 21 N -0.172 5.172 22 H 0.286 0.714 23 N -0.115 5.115 24 C -0.028 4.028 25 C 0.010 3.990 26 C -0.201 4.201 27 C -0.193 4.193 28 C -0.206 4.206 29 C -0.030 4.030 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.200 0.800 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.112 0.888 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.076 -24.165 -1.041 24.529 hybrid contribution -1.694 0.010 -0.676 1.824 sum 2.381 -24.156 -1.717 24.333 Atomic orbital electron populations 1.21356 0.84771 0.99418 0.98150 1.44121 1.00553 1.01533 1.86079 1.18811 1.04562 0.84878 1.31370 0.89981 1.25286 0.98141 0.94963 0.98216 1.69937 1.45783 0.97697 1.40107 0.87089 0.80358 0.77541 0.84759 1.21594 1.23010 1.19407 1.20646 0.97096 0.85554 0.90783 0.90750 1.22029 0.99369 0.95056 1.00553 1.21891 1.01242 0.97101 0.96712 1.21767 1.00818 0.94072 0.84888 1.48116 1.49362 1.18654 1.17370 1.17296 0.77531 0.85121 0.82127 1.90730 1.58325 1.57652 1.34026 1.20248 0.93942 0.94005 1.20148 1.22999 0.96986 0.87354 0.98558 1.46066 1.05026 1.09139 1.56971 0.71416 1.77118 0.98890 1.10273 1.25252 1.22328 0.93813 0.91171 0.95469 1.19075 0.90036 0.92287 0.97585 1.21947 1.03473 0.97229 0.97464 1.21812 0.95412 0.99923 1.02111 1.22066 1.03854 1.01423 0.93287 1.22398 0.96607 0.81480 1.02490 0.96524 0.93092 0.95452 0.92718 0.92517 0.91395 0.91333 0.91546 0.91845 0.90233 0.79988 0.92808 0.91567 0.91154 0.92281 0.92171 0.92568 0.89038 0.92238 0.93228 0.88820 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.30 8.54 59.84 0.51 2.81 16 2 N -0.60 -13.93 2.49 -173.61 -0.43 -14.36 16 3 C -0.27 -7.44 9.85 -15.06 -0.15 -7.58 16 4 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 5 C 0.03 0.99 5.22 -17.43 -0.09 0.90 16 6 N -0.89 -27.26 13.97 55.49 0.78 -26.48 16 7 Si 0.87 22.31 25.15 -169.99 -4.28 18.03 16 8 H -0.29 -7.07 6.55 56.52 0.37 -6.70 16 9 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.17 3.19 2.73 -68.03 -0.19 3.01 16 12 H 0.07 1.54 7.89 -51.93 -0.41 1.13 16 13 C -0.13 -2.00 5.15 -26.69 -0.14 -2.13 16 14 C -0.13 -1.54 6.08 -26.62 -0.16 -1.70 16 15 C 0.11 1.17 5.98 -3.71 -0.02 1.15 16 16 N -0.60 -8.72 2.98 -174.30 -0.52 -9.24 16 17 C 0.59 9.15 5.51 -12.52 -0.07 9.08 16 18 O -0.53 -10.11 13.20 5.27 0.07 -10.04 16 19 C -0.27 -3.40 4.64 -105.07 -0.49 -3.89 16 20 C 0.09 0.82 10.15 -16.56 -0.17 0.65 16 21 N -0.47 -3.83 7.29 30.85 0.22 -3.61 16 22 H 0.44 1.93 8.96 -182.72 -1.64 0.30 16 23 N -0.29 -3.43 11.94 33.89 0.40 -3.03 16 24 C 0.14 1.80 5.63 -82.02 -0.46 1.34 16 25 C 0.01 0.15 0.86 -155.66 -0.13 0.02 16 26 C -0.14 -1.86 8.07 37.16 0.30 -1.56 16 27 C -0.14 -1.43 7.98 37.16 0.30 -1.13 16 28 C -0.15 -1.95 8.46 37.16 0.31 -1.63 16 29 C 0.09 1.67 5.77 -3.94 -0.02 1.64 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 1.20 2.97 -51.93 -0.15 1.05 16 32 H 0.03 0.51 6.35 -51.93 -0.33 0.18 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.06 0.83 7.72 -51.93 -0.40 0.43 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.75 5.37 -51.93 -0.28 0.48 16 40 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.10 5.57 -51.93 -0.29 0.81 16 44 H 0.06 0.62 8.11 -51.92 -0.42 0.20 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.09 1.45 5.29 -51.93 -0.27 1.18 16 48 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 49 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 50 H 0.09 1.98 6.99 -51.93 -0.36 1.62 16 51 H 0.06 1.02 6.48 -51.93 -0.34 0.68 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -33.68 384.03 -8.19 -41.87 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -9.56 Total: 0.10 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.67 Total: 0.97 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.45 Total: -56.72 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.04 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.28 Total: 18.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.68 -8.19 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027648325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.090 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds