Wall clock time and date at job start Tue Mar 31 2020 20:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36946 * 119.99755 * 2 1 4 4 H 1.07993 * 119.99843 * 149.97999 * 3 2 1 5 5 C 1.38809 * 119.99697 * 329.97382 * 3 2 1 6 6 N 1.31619 * 119.99481 * 151.95855 * 5 3 2 7 7 Si 1.86796 * 120.00395 * 331.95979 * 5 3 2 8 8 H 1.48504 * 109.47012 * 94.58513 * 7 5 3 9 9 H 1.48497 * 109.47449 * 214.58433 * 7 5 3 10 10 H 1.48504 * 109.47287 * 334.58565 * 7 5 3 11 11 C 1.46494 * 120.00310 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49752 * 179.97438 * 11 2 1 13 13 C 1.53044 * 109.49922 * 299.99858 * 11 2 1 14 14 C 1.53032 * 109.54079 * 181.31493 * 13 11 2 15 15 C 1.53191 * 109.31654 * 298.63554 * 14 13 11 16 16 N 1.46932 * 108.77373 * 54.63510 * 15 14 13 17 17 C 1.34771 * 120.62935 * 126.37071 * 16 15 14 18 18 O 1.21605 * 119.99844 * 185.25041 * 17 16 15 19 19 C 1.47429 * 120.00345 * 4.97338 * 17 16 15 20 20 C 1.38037 * 126.41245 * 53.32410 * 19 17 16 21 21 N 1.34263 * 107.41720 * 179.83848 * 20 19 17 22 22 H 0.96997 * 125.76199 * 180.16266 * 21 20 19 23 23 N 1.39942 * 108.48790 * 0.42980 * 21 20 19 24 24 C 1.30442 * 108.89673 * 359.73077 * 23 21 20 25 25 C 1.50700 * 125.98866 * 179.97438 * 24 23 21 26 26 C 1.53000 * 109.47553 * 229.73659 * 25 24 23 27 27 C 1.53000 * 109.47219 * 349.73721 * 25 24 23 28 28 C 1.53007 * 109.47161 * 109.73511 * 25 24 23 29 29 C 1.46923 * 118.73447 * 306.64567 * 16 15 14 30 30 H 1.09000 * 109.47758 * 264.48574 * 1 2 3 31 31 H 1.09004 * 109.47560 * 24.48308 * 1 2 3 32 32 H 1.09005 * 109.47191 * 144.48819 * 1 2 3 33 33 H 0.97002 * 119.99707 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.45656 * 61.29338 * 13 11 2 35 35 H 1.08998 * 109.45965 * 301.34041 * 13 11 2 36 36 H 1.09004 * 109.50094 * 178.68666 * 14 13 11 37 37 H 1.08996 * 109.52386 * 58.60498 * 14 13 11 38 38 H 1.09003 * 109.58665 * 294.85413 * 15 14 13 39 39 H 1.09003 * 109.58827 * 174.42083 * 15 14 13 40 40 H 1.07998 * 126.29363 * 0.02562 * 20 19 17 41 41 H 1.09000 * 109.46762 * 53.87119 * 26 25 24 42 42 H 1.09001 * 109.47220 * 173.87830 * 26 25 24 43 43 H 1.09002 * 109.47017 * 293.87789 * 26 25 24 44 44 H 1.09008 * 109.46910 * 60.00190 * 27 25 24 45 45 H 1.08999 * 109.47506 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.47423 * 300.00206 * 27 25 24 47 47 H 1.09006 * 109.46909 * 69.98488 * 28 25 24 48 48 H 1.08997 * 109.47291 * 189.98966 * 28 25 24 49 49 H 1.09000 * 109.47142 * 309.98943 * 28 25 24 50 50 H 1.09001 * 109.58575 * 173.14326 * 29 16 15 51 51 H 1.08997 * 109.58859 * 293.56566 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1209 1.2488 0.4679 5 6 1.5952 2.3074 -0.6016 6 7 1.9129 3.5099 -0.1710 7 14 0.3982 2.1099 -2.0219 8 1 -0.9931 2.1269 -1.5028 9 1 0.5816 3.2271 -2.9829 10 1 0.6543 0.8187 -2.7093 11 6 2.1975 -1.2686 0.0006 12 1 3.2692 -1.0699 0.0000 13 6 1.8283 -2.0712 1.2503 14 6 2.6176 -3.3821 1.2685 15 6 2.2497 -4.2123 0.0348 16 7 2.4654 -3.3946 -1.1669 17 6 3.2366 -3.8466 -2.1755 18 8 3.4854 -3.1239 -3.1214 19 6 3.7835 -5.2149 -2.1294 20 6 3.0657 -6.3781 -1.9367 21 7 3.9381 -7.3982 -1.9662 22 1 3.7168 -8.3367 -1.8603 23 7 5.2216 -6.8788 -2.1695 24 6 5.1412 -5.5806 -2.2679 25 6 6.2944 -4.6362 -2.4899 26 6 6.2308 -3.5033 -1.4636 27 6 7.6132 -5.3953 -2.3303 28 6 6.2102 -4.0512 -3.9012 29 6 1.8294 -2.0725 -1.2451 30 1 -0.3634 -0.0987 1.0229 31 1 -0.3634 0.9353 -0.4259 32 1 -0.3634 -0.8365 -0.5970 33 1 1.5252 4.2936 -0.5912 34 1 0.7605 -2.2903 1.2388 35 1 2.0698 -1.4894 2.1399 36 1 2.3716 -3.9424 2.1706 37 1 3.6855 -3.1644 1.2554 38 1 1.2021 -4.5078 0.0923 39 1 2.8803 -5.1003 -0.0095 40 1 1.9981 -6.4540 -1.7921 41 1 6.1810 -3.9249 -0.4597 42 1 7.1216 -2.8816 -1.5530 43 1 5.3442 -2.8963 -1.6470 44 1 7.6586 -6.2025 -3.0616 45 1 8.4474 -4.7124 -2.4913 46 1 7.6733 -5.8121 -1.3250 47 1 5.3635 -3.3673 -3.9611 48 1 7.1300 -3.5115 -4.1262 49 1 6.0770 -4.8583 -4.6216 50 1 2.1827 -1.5491 -2.1336 51 1 0.7469 -2.1901 -1.2941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027648325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:31 Heat of formation + Delta-G solvation = 40.110351 kcal Electronic energy + Delta-G solvation = -31091.180046 eV Core-core repulsion = 27220.017384 eV Total energy + Delta-G solvation = -3871.162662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.61129 -40.75556 -38.85998 -37.72369 -36.76431 -34.10579 -33.06720 -32.01402 -31.84283 -30.44491 -28.19675 -28.08554 -28.04957 -26.53575 -25.50708 -23.71946 -23.44404 -22.85678 -21.09724 -20.30688 -19.25014 -18.96599 -18.65795 -17.76628 -17.35471 -16.74139 -16.45005 -16.02609 -15.75803 -15.60867 -15.44273 -15.12930 -14.89032 -14.76530 -14.65100 -14.35241 -14.15387 -14.12876 -13.98770 -13.76844 -13.56522 -13.24871 -13.05999 -12.97102 -12.56118 -12.54590 -12.30145 -12.23517 -12.09738 -12.03097 -11.94683 -11.80484 -11.74124 -11.59061 -11.43670 -11.41376 -10.83385 -10.56466 -10.48491 -9.76318 -9.56439 -8.83385 -8.22225 -5.48162 0.70828 1.21046 1.27169 1.42641 1.52153 1.75824 1.95663 2.26530 2.40668 3.02056 3.35084 3.39492 3.67703 3.84700 4.00040 4.03502 4.06303 4.11641 4.14469 4.22651 4.35065 4.37161 4.45792 4.54986 4.56147 4.64592 4.72558 4.74443 4.78481 4.80523 4.86825 4.90133 4.93467 4.97961 5.01686 5.03045 5.05356 5.08370 5.16454 5.18793 5.35359 5.43731 5.46502 5.48012 5.52347 5.64421 5.88882 6.12755 6.32921 6.51420 6.62662 6.95058 7.31356 7.64011 8.01009 8.98162 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015789 B = 0.003689 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.972846 B = 7588.994247 C = 8192.567043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.614 5.614 3 C -0.259 4.259 4 H 0.043 0.957 5 C -0.021 4.021 6 N -0.943 5.943 7 Si 0.938 3.062 8 H -0.265 1.265 9 H -0.312 1.312 10 H -0.268 1.268 11 C 0.167 3.833 12 H 0.040 0.960 13 C -0.120 4.120 14 C -0.124 4.124 15 C 0.107 3.893 16 N -0.600 5.600 17 C 0.592 3.408 18 O -0.578 6.578 19 C -0.304 4.304 20 C 0.126 3.874 21 N -0.445 5.445 22 H 0.461 0.539 23 N -0.309 5.309 24 C 0.126 3.874 25 C 0.010 3.990 26 C -0.136 4.136 27 C -0.127 4.127 28 C -0.143 4.143 29 C 0.109 3.891 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.263 0.737 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.226 0.774 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.049 0.951 50 H 0.050 0.950 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -28.315 0.106 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.338 5.338 3 C -0.388 4.388 4 H 0.061 0.939 5 C -0.217 4.217 6 N -0.588 5.588 7 Si 0.767 3.233 8 H -0.192 1.192 9 H -0.241 1.241 10 H -0.193 1.193 11 C 0.059 3.941 12 H 0.058 0.942 13 C -0.159 4.159 14 C -0.163 4.163 15 C -0.015 4.015 16 N -0.332 5.332 17 C 0.382 3.618 18 O -0.459 6.459 19 C -0.319 4.319 20 C -0.027 4.027 21 N -0.152 5.152 22 H 0.310 0.690 23 N -0.131 5.131 24 C -0.041 4.041 25 C 0.008 3.992 26 C -0.194 4.194 27 C -0.184 4.184 28 C -0.201 4.201 29 C -0.016 4.016 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.243 0.757 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.088 0.912 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.176 -28.823 -0.399 28.908 hybrid contribution -1.033 1.332 -0.790 1.862 sum 1.143 -27.491 -1.189 27.541 Atomic orbital electron populations 1.21425 0.83203 0.99558 0.99598 1.44210 1.01643 1.01442 1.86537 1.18710 1.03313 0.86923 1.29874 0.93926 1.25849 1.00927 0.94574 1.00355 1.70047 1.48503 0.98521 1.41703 0.86021 0.79443 0.76791 0.81058 1.19233 1.24099 1.19290 1.20725 0.94872 0.84757 0.93706 0.94191 1.21876 1.00969 0.95959 0.97089 1.21872 0.99718 0.95628 0.99038 1.22075 1.03334 0.93746 0.82310 1.48112 1.48943 1.17542 1.18621 1.17716 0.76698 0.86004 0.81412 1.90713 1.59805 1.59301 1.36042 1.20073 0.94510 0.93477 1.23855 1.23492 0.98385 0.85712 0.95114 1.46091 1.03908 1.10187 1.55032 0.69016 1.77068 1.00734 1.09562 1.25757 1.22306 0.93962 0.91630 0.96198 1.19049 0.91467 0.92305 0.96404 1.21860 1.02113 0.97319 0.98146 1.21736 0.94579 0.99848 1.02250 1.21976 1.02996 1.00870 0.94269 1.21892 0.97293 0.82963 0.99461 0.94852 0.95245 0.92191 0.92809 0.90695 0.93159 0.87653 0.93096 0.88480 0.88043 0.75719 0.92187 0.91074 0.94375 0.92205 0.91179 0.92274 0.92134 0.91211 0.93175 0.93141 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.35 8.54 127.77 1.09 5.44 16 2 N -0.61 -28.87 2.49 -703.17 -1.75 -30.62 16 3 C -0.26 -15.01 9.85 84.03 0.83 -14.19 16 4 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 5 C -0.02 -1.22 5.22 84.86 0.44 -0.78 16 6 N -0.94 -60.00 13.97 21.65 0.30 -59.70 16 7 Si 0.94 47.39 25.15 68.60 1.73 49.11 16 8 H -0.27 -12.36 6.55 99.48 0.65 -11.71 16 9 H -0.31 -16.14 7.11 99.48 0.71 -15.44 16 10 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 11 C 0.17 6.43 2.73 44.93 0.12 6.55 16 12 H 0.04 1.78 7.89 -2.39 -0.02 1.76 16 13 C -0.12 -3.44 5.15 30.62 0.16 -3.28 16 14 C -0.12 -2.53 6.08 30.67 0.19 -2.35 16 15 C 0.11 1.87 5.98 86.36 0.52 2.39 16 16 N -0.60 -16.48 2.98 -823.61 -2.45 -18.93 16 17 C 0.59 18.08 5.51 86.67 0.48 18.56 16 18 O -0.58 -23.13 13.20 -4.05 -0.05 -23.18 16 19 C -0.30 -7.07 4.64 -20.15 -0.09 -7.16 16 20 C 0.13 1.64 10.15 84.27 0.86 2.50 16 21 N -0.45 -5.36 7.29 -56.32 -0.41 -5.77 16 22 H 0.46 1.74 8.96 -213.43 -1.91 -0.18 16 23 N -0.31 -6.38 11.94 -46.68 -0.56 -6.94 16 24 C 0.13 3.06 5.63 43.52 0.25 3.31 16 25 C 0.01 0.24 0.86 -52.93 -0.05 0.20 16 26 C -0.14 -3.67 8.07 71.98 0.58 -3.08 16 27 C -0.13 -2.54 7.98 71.98 0.57 -1.96 16 28 C -0.14 -3.89 8.46 71.98 0.61 -3.28 16 29 C 0.11 3.83 5.77 86.22 0.50 4.32 16 30 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 1.34 2.97 -2.39 -0.01 1.33 16 32 H 0.06 2.05 6.35 -2.38 -0.02 2.04 16 33 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.07 1.91 7.72 -2.38 -0.02 1.89 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 1.41 5.37 -2.39 -0.01 1.40 16 40 H 0.23 0.93 8.06 -2.91 -0.02 0.90 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.27 5.57 -2.39 -0.01 1.25 16 44 H 0.06 1.18 8.11 -2.38 -0.02 1.16 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 2.06 5.29 -2.38 -0.01 2.05 16 48 H 0.07 1.66 8.11 -2.39 -0.02 1.64 16 49 H 0.05 1.30 8.11 -2.39 -0.02 1.28 16 50 H 0.05 2.22 6.99 -2.39 -0.02 2.20 16 51 H 0.08 2.39 6.48 -2.39 -0.02 2.38 16 Total: -1.00 -80.39 384.03 2.82 -77.57 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -1.03 Total: 11.27 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 7.05 Total: 7.19 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -4.87 Total: -121.96 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.73 Total: 49.11 kcal Total: -80.39 2.82 -77.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027648325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.677 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds