Wall clock time and date at job start Tue Mar 31 2020 19:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47589 * 2 1 4 4 C 1.50705 * 109.46859 * 120.00197 * 2 1 3 5 5 N 1.30449 * 125.98708 * 299.99909 * 4 2 1 6 6 N 1.39934 * 108.89556 * 179.97438 * 5 4 2 7 7 C 1.46501 * 125.75169 * 180.02562 * 6 5 4 8 8 C 1.34260 * 108.49136 * 359.75003 * 6 5 4 9 9 C 1.38038 * 107.41895 * 0.39431 * 8 6 5 10 10 C 1.47426 * 126.41759 * 179.87844 * 9 8 6 11 11 O 1.21602 * 120.00041 * 229.28129 * 10 9 8 12 12 N 1.34776 * 120.00392 * 49.27637 * 10 9 8 13 13 C 1.46999 * 120.61172 * 355.73203 * 12 10 9 14 14 C 1.53191 * 108.73984 * 126.38737 * 13 12 10 15 15 C 1.53038 * 109.33678 * 54.62148 * 14 13 12 16 16 C 1.53041 * 109.53891 * 298.61722 * 15 14 13 17 17 H 1.09008 * 109.49561 * 301.38564 * 16 15 14 18 18 N 1.46495 * 109.49765 * 181.32281 * 16 15 14 19 19 C 1.46504 * 120.00014 * 300.00043 * 18 16 15 20 20 C 1.36939 * 120.00275 * 120.00015 * 18 16 15 21 21 H 1.08002 * 119.99747 * 28.50029 * 20 18 16 22 22 C 1.38810 * 120.00127 * 208.50185 * 20 18 16 23 23 N 1.31622 * 120.00086 * 8.02421 * 22 20 18 24 24 Si 1.86804 * 120.00271 * 188.02657 * 22 20 18 25 25 H 1.48495 * 109.46882 * 59.99675 * 24 22 20 26 26 H 1.48499 * 109.47228 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46680 * 299.99977 * 24 22 20 28 28 C 1.46918 * 120.63441 * 175.70543 * 12 10 9 29 29 H 1.08995 * 109.46930 * 300.00741 * 1 2 3 30 30 H 1.09008 * 109.46836 * 59.99856 * 1 2 3 31 31 H 1.08991 * 109.47697 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47036 * 239.99456 * 2 1 3 33 33 H 1.08999 * 109.46938 * 59.99984 * 3 2 1 34 34 H 1.09004 * 109.47155 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47063 * 299.99712 * 3 2 1 36 36 H 1.08999 * 109.46792 * 89.97628 * 7 6 5 37 37 H 1.09003 * 109.47025 * 209.97227 * 7 6 5 38 38 H 1.08994 * 109.46972 * 329.97204 * 7 6 5 39 39 H 1.07997 * 126.28854 * 180.24796 * 8 6 5 40 40 H 1.09003 * 109.63113 * 6.58971 * 13 12 10 41 41 H 1.09000 * 109.57804 * 246.15125 * 13 12 10 42 42 H 1.08997 * 109.49673 * 294.65024 * 14 13 12 43 43 H 1.09001 * 109.49646 * 174.59050 * 14 13 12 44 44 H 1.08994 * 109.46495 * 58.64595 * 15 14 13 45 45 H 1.09009 * 109.45407 * 178.59894 * 15 14 13 46 46 H 1.09000 * 109.47105 * 85.34891 * 19 18 16 47 47 H 1.08998 * 109.47469 * 205.35493 * 19 18 16 48 48 H 1.09004 * 109.46937 * 325.35074 * 19 18 16 49 49 H 0.97005 * 120.00324 * 179.97438 * 23 22 20 50 50 H 1.09008 * 109.58660 * 113.84481 * 28 12 10 51 51 H 1.08997 * 109.58658 * 353.42115 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7902 -0.3682 2.4658 6 7 2.4294 -1.2733 3.3204 7 6 2.4008 -1.2342 4.7846 8 6 3.0682 -2.1869 2.5723 9 6 2.8474 -1.8644 1.2484 10 6 3.3606 -2.5916 0.0731 11 8 3.9133 -1.9845 -0.8239 12 7 3.2174 -3.9293 -0.0071 13 6 2.6361 -4.6883 1.1095 14 6 1.4717 -5.5305 0.5789 15 6 1.9617 -6.3974 -0.5832 16 6 2.4628 -5.4990 -1.7162 17 1 1.6569 -4.8414 -2.0426 18 7 2.9022 -6.3290 -2.8405 19 6 3.9831 -7.3005 -2.6553 20 6 2.3027 -6.1970 -4.0646 21 1 1.8730 -5.2500 -4.3560 22 6 2.2473 -7.2803 -4.9308 23 7 2.6264 -8.4718 -4.5196 24 14 1.6348 -7.0471 -6.6801 25 1 2.5044 -6.0699 -7.3828 26 1 1.6724 -8.3480 -7.3952 27 1 0.2399 -6.5382 -6.6523 28 6 3.6387 -4.6564 -1.2123 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5140 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6769 1.9562 -0.8900 36 1 1.5543 -1.8174 5.1471 37 1 3.3265 -1.6548 5.1774 38 1 2.3004 -0.2016 5.1186 39 1 3.6500 -3.0196 2.9389 40 1 2.2712 -3.9984 1.8705 41 1 3.3940 -5.3427 1.5401 42 1 0.6754 -4.8723 0.2313 43 1 1.0928 -6.1704 1.3758 44 1 2.7745 -7.0379 -0.2410 45 1 1.1407 -7.0159 -0.9461 46 1 3.5712 -8.2333 -2.2702 47 1 4.4723 -7.4865 -3.6114 48 1 4.7101 -6.9043 -1.9463 49 1 2.5873 -9.2289 -5.1248 50 1 4.4784 -5.3083 -0.9710 51 1 3.9354 -3.9451 -1.9831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027676934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:53 Heat of formation + Delta-G solvation = 61.420426 kcal Electronic energy + Delta-G solvation = -30323.236092 eV Core-core repulsion = 26452.997505 eV Total energy + Delta-G solvation = -3870.238588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.65099 -39.46114 -37.25943 -35.88557 -34.99863 -32.74063 -32.19734 -31.32017 -30.50470 -28.57327 -27.23235 -27.14692 -25.95573 -25.14929 -23.62251 -22.65360 -22.21473 -21.42524 -19.94967 -19.06741 -18.55985 -17.21523 -16.67138 -16.44435 -15.79293 -15.47920 -15.04505 -14.83682 -14.66476 -14.38061 -13.98945 -13.86987 -13.65116 -13.55696 -13.40143 -13.11663 -12.94743 -12.65172 -12.61610 -12.46582 -12.23273 -12.14039 -11.92088 -11.51947 -11.21497 -11.07990 -10.98828 -10.91697 -10.83653 -10.68711 -10.57595 -10.37183 -10.23828 -10.08968 -9.89582 -9.73647 -9.58531 -9.43640 -8.68636 -8.52653 -8.23896 -6.64035 -5.72167 -3.21206 1.48066 2.16291 2.23421 3.09197 3.42062 3.44036 3.46499 3.49366 4.15623 4.42138 4.52333 4.60853 4.76588 4.88228 4.91622 5.01973 5.03607 5.16073 5.21687 5.31356 5.40938 5.42729 5.48690 5.50749 5.59958 5.63207 5.64814 5.81648 5.83430 5.87765 5.92672 5.99209 6.06993 6.21265 6.22461 6.23606 6.29180 6.43108 6.45602 6.59239 6.64657 6.74952 6.87551 7.01229 7.07351 7.39864 7.47803 7.72095 7.74483 7.84597 8.45528 8.51636 9.27328 9.88302 10.39943 11.34171 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.003185 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.922433 B = 8788.374614 C = 9770.120353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C -0.138 4.138 4 C 0.133 3.867 5 N -0.294 5.294 6 N -0.366 5.366 7 C 0.099 3.901 8 C 0.087 3.913 9 C -0.270 4.270 10 C 0.590 3.410 11 O -0.539 6.539 12 N -0.600 5.600 13 C 0.104 3.896 14 C -0.131 4.131 15 C -0.130 4.130 16 C 0.169 3.831 17 H 0.064 0.936 18 N -0.590 5.590 19 C 0.162 3.838 20 C -0.257 4.257 21 H 0.066 0.934 22 C 0.007 3.993 23 N -0.907 5.907 24 Si 0.905 3.095 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.099 3.901 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.182 0.818 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.018 0.982 47 H 0.054 0.946 48 H -0.006 1.006 49 H 0.253 0.747 50 H 0.063 0.937 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 12.515 20.259 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.196 4.196 4 C -0.034 4.034 5 N -0.116 5.116 6 N -0.145 5.145 7 C -0.042 4.042 8 C -0.063 4.063 9 C -0.285 4.285 10 C 0.377 3.623 11 O -0.416 6.416 12 N -0.333 5.333 13 C -0.020 4.020 14 C -0.170 4.170 15 C -0.170 4.170 16 C 0.060 3.940 17 H 0.083 0.917 18 N -0.312 5.312 19 C 0.017 3.983 20 C -0.386 4.386 21 H 0.083 0.917 22 C -0.192 4.192 23 N -0.552 5.552 24 Si 0.735 3.265 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.209 1.209 28 C -0.024 4.024 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.199 0.801 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.013 0.987 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.406 13.478 20.601 24.658 hybrid contribution 0.114 -0.947 -1.151 1.495 sum -1.293 12.531 19.450 23.173 Atomic orbital electron populations 1.21810 0.93734 1.02200 1.02169 1.19734 0.95907 0.95928 0.92555 1.21755 1.01451 0.94403 1.01943 1.22285 0.94758 0.92933 0.93403 1.77094 1.20323 1.14117 1.00024 1.48254 1.38440 1.20950 1.06881 1.21933 1.03577 1.04922 0.73732 1.22985 0.97696 0.94914 0.90660 1.20266 1.12690 1.02596 0.92936 1.17324 0.78505 0.81282 0.85147 1.90768 1.43034 1.67377 1.40456 1.48073 1.61420 1.05979 1.17809 1.21902 0.95938 0.94994 0.89123 1.21917 0.97460 0.98655 0.98979 1.22088 1.01130 0.98529 0.95279 1.20607 0.93681 0.91841 0.87898 0.91731 1.43812 1.38417 1.43005 1.05990 1.20756 0.88121 0.90979 0.98426 1.19171 1.33069 0.94757 0.91628 0.91666 1.25131 0.99965 0.94920 0.99177 1.70024 1.51638 0.98790 1.34698 0.86336 0.78936 0.76713 0.84546 1.20917 1.21666 1.20889 1.22380 0.98806 0.95518 0.85743 0.92253 0.91846 0.92534 0.88430 0.92410 0.92390 0.91946 0.90352 0.89265 0.89055 0.80100 0.90165 0.91682 0.91846 0.91588 0.92551 0.91552 0.96333 0.92722 0.98723 0.93694 0.91898 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 2 C -0.02 -0.27 3.31 -91.77 -0.30 -0.57 16 3 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 4 C 0.13 1.83 5.77 -82.02 -0.47 1.36 16 5 N -0.29 -3.73 12.50 33.90 0.42 -3.31 16 6 N -0.37 -3.60 3.98 -67.60 -0.27 -3.87 16 7 C 0.10 0.48 11.44 59.85 0.68 1.17 16 8 C 0.09 0.90 9.11 -16.56 -0.15 0.74 16 9 C -0.27 -3.74 5.18 -105.07 -0.54 -4.29 16 10 C 0.59 9.86 7.15 -12.52 -0.09 9.77 16 11 O -0.54 -10.95 15.77 5.28 0.08 -10.86 16 12 N -0.60 -9.45 2.97 -173.98 -0.52 -9.97 16 13 C 0.10 1.26 5.87 -3.67 -0.02 1.24 16 14 C -0.13 -1.77 6.08 -26.61 -0.16 -1.93 16 15 C -0.13 -2.31 5.15 -26.69 -0.14 -2.45 16 16 C 0.17 3.48 2.75 -67.82 -0.19 3.30 16 17 H 0.06 1.42 7.89 -51.92 -0.41 1.01 16 18 N -0.59 -14.74 2.80 -173.34 -0.49 -15.22 16 19 C 0.16 3.93 8.10 59.85 0.48 4.42 16 20 C -0.26 -7.11 9.52 -15.06 -0.14 -7.25 16 21 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 22 C 0.01 0.19 5.13 -17.43 -0.09 0.10 16 23 N -0.91 -26.32 10.85 55.49 0.60 -25.71 16 24 Si 0.90 22.04 29.56 -169.99 -5.03 17.01 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C 0.10 1.85 5.77 -3.72 -0.02 1.83 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.47 6.95 -51.92 -0.36 1.11 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.18 1.25 7.54 -52.49 -0.40 0.85 16 40 H 0.08 0.83 4.52 -51.93 -0.23 0.60 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.00 7.72 -51.93 -0.40 0.60 16 45 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 46 H 0.02 0.47 7.79 -51.93 -0.40 0.07 16 47 H 0.05 1.45 6.93 -51.93 -0.36 1.09 16 48 H -0.01 -0.12 6.35 -51.93 -0.33 -0.45 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.06 1.16 6.49 -51.92 -0.34 0.83 16 51 H 0.09 1.91 7.03 -51.93 -0.36 1.54 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -33.83 399.63 -8.28 -42.11 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.64 Total: -1.17 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.47 Total: 4.98 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.25 Total: -58.08 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.83 -8.28 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027676934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.525 kcal (2) G-P(sol) polarization free energy of solvation -33.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds