Wall clock time and date at job start Tue Mar 31 2020 19:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47589 * 2 1 4 4 C 1.50705 * 109.46859 * 120.00197 * 2 1 3 5 5 N 1.30449 * 125.98708 * 299.99909 * 4 2 1 6 6 N 1.39934 * 108.89556 * 179.97438 * 5 4 2 7 7 C 1.46501 * 125.75169 * 180.02562 * 6 5 4 8 8 C 1.34260 * 108.49136 * 359.75003 * 6 5 4 9 9 C 1.38038 * 107.41895 * 0.39431 * 8 6 5 10 10 C 1.47426 * 126.41759 * 179.87844 * 9 8 6 11 11 O 1.21602 * 120.00041 * 229.28129 * 10 9 8 12 12 N 1.34776 * 120.00392 * 49.27637 * 10 9 8 13 13 C 1.46999 * 120.61172 * 355.73203 * 12 10 9 14 14 C 1.53191 * 108.73984 * 126.38737 * 13 12 10 15 15 C 1.53038 * 109.33678 * 54.62148 * 14 13 12 16 16 C 1.53041 * 109.53891 * 298.61722 * 15 14 13 17 17 H 1.09008 * 109.49561 * 301.38564 * 16 15 14 18 18 N 1.46495 * 109.49765 * 181.32281 * 16 15 14 19 19 C 1.46504 * 120.00014 * 300.00043 * 18 16 15 20 20 C 1.36939 * 120.00275 * 120.00015 * 18 16 15 21 21 H 1.08002 * 119.99747 * 28.50029 * 20 18 16 22 22 C 1.38810 * 120.00127 * 208.50185 * 20 18 16 23 23 N 1.31622 * 120.00086 * 8.02421 * 22 20 18 24 24 Si 1.86804 * 120.00271 * 188.02657 * 22 20 18 25 25 H 1.48495 * 109.46882 * 59.99675 * 24 22 20 26 26 H 1.48499 * 109.47228 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46680 * 299.99977 * 24 22 20 28 28 C 1.46918 * 120.63441 * 175.70543 * 12 10 9 29 29 H 1.08995 * 109.46930 * 300.00741 * 1 2 3 30 30 H 1.09008 * 109.46836 * 59.99856 * 1 2 3 31 31 H 1.08991 * 109.47697 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47036 * 239.99456 * 2 1 3 33 33 H 1.08999 * 109.46938 * 59.99984 * 3 2 1 34 34 H 1.09004 * 109.47155 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47063 * 299.99712 * 3 2 1 36 36 H 1.08999 * 109.46792 * 89.97628 * 7 6 5 37 37 H 1.09003 * 109.47025 * 209.97227 * 7 6 5 38 38 H 1.08994 * 109.46972 * 329.97204 * 7 6 5 39 39 H 1.07997 * 126.28854 * 180.24796 * 8 6 5 40 40 H 1.09003 * 109.63113 * 6.58971 * 13 12 10 41 41 H 1.09000 * 109.57804 * 246.15125 * 13 12 10 42 42 H 1.08997 * 109.49673 * 294.65024 * 14 13 12 43 43 H 1.09001 * 109.49646 * 174.59050 * 14 13 12 44 44 H 1.08994 * 109.46495 * 58.64595 * 15 14 13 45 45 H 1.09009 * 109.45407 * 178.59894 * 15 14 13 46 46 H 1.09000 * 109.47105 * 85.34891 * 19 18 16 47 47 H 1.08998 * 109.47469 * 205.35493 * 19 18 16 48 48 H 1.09004 * 109.46937 * 325.35074 * 19 18 16 49 49 H 0.97005 * 120.00324 * 179.97438 * 23 22 20 50 50 H 1.09008 * 109.58660 * 113.84481 * 28 12 10 51 51 H 1.08997 * 109.58658 * 353.42115 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7902 -0.3682 2.4658 6 7 2.4294 -1.2733 3.3204 7 6 2.4008 -1.2342 4.7846 8 6 3.0682 -2.1869 2.5723 9 6 2.8474 -1.8644 1.2484 10 6 3.3606 -2.5916 0.0731 11 8 3.9133 -1.9845 -0.8239 12 7 3.2174 -3.9293 -0.0071 13 6 2.6361 -4.6883 1.1095 14 6 1.4717 -5.5305 0.5789 15 6 1.9617 -6.3974 -0.5832 16 6 2.4628 -5.4990 -1.7162 17 1 1.6569 -4.8414 -2.0426 18 7 2.9022 -6.3290 -2.8405 19 6 3.9831 -7.3005 -2.6553 20 6 2.3027 -6.1970 -4.0646 21 1 1.8730 -5.2500 -4.3560 22 6 2.2473 -7.2803 -4.9308 23 7 2.6264 -8.4718 -4.5196 24 14 1.6348 -7.0471 -6.6801 25 1 2.5044 -6.0699 -7.3828 26 1 1.6724 -8.3480 -7.3952 27 1 0.2399 -6.5382 -6.6523 28 6 3.6387 -4.6564 -1.2123 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 1.8933 -0.5140 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6769 1.9562 -0.8900 36 1 1.5543 -1.8174 5.1471 37 1 3.3265 -1.6548 5.1774 38 1 2.3004 -0.2016 5.1186 39 1 3.6500 -3.0196 2.9389 40 1 2.2712 -3.9984 1.8705 41 1 3.3940 -5.3427 1.5401 42 1 0.6754 -4.8723 0.2313 43 1 1.0928 -6.1704 1.3758 44 1 2.7745 -7.0379 -0.2410 45 1 1.1407 -7.0159 -0.9461 46 1 3.5712 -8.2333 -2.2702 47 1 4.4723 -7.4865 -3.6114 48 1 4.7101 -6.9043 -1.9463 49 1 2.5873 -9.2289 -5.1248 50 1 4.4784 -5.3083 -0.9710 51 1 3.9354 -3.9451 -1.9831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027676934.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:51 Heat of formation + Delta-G solvation = 40.367844 kcal Electronic energy + Delta-G solvation = -30324.149001 eV Core-core repulsion = 26452.997505 eV Total energy + Delta-G solvation = -3871.151496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.56190 -40.75571 -38.75371 -36.90766 -36.60035 -34.04777 -33.30184 -32.85981 -31.67831 -30.09367 -28.06095 -28.04074 -27.93752 -26.37235 -25.32062 -23.67812 -23.26453 -22.76299 -21.18079 -20.33402 -19.70049 -18.80336 -18.21014 -17.53288 -17.03435 -16.66348 -16.36744 -16.04144 -15.72553 -15.64664 -15.49702 -15.17125 -15.09937 -14.70735 -14.43532 -14.34322 -14.18024 -13.81633 -13.70018 -13.63343 -13.43946 -13.30022 -12.98848 -12.86101 -12.80976 -12.52414 -12.42307 -12.29234 -12.17242 -12.11363 -11.99987 -11.93909 -11.76750 -11.74660 -11.56183 -11.36603 -10.91484 -10.62569 -10.27906 -9.75363 -9.48850 -8.66414 -7.86003 -5.37283 0.64693 1.18620 1.44751 1.47088 1.48150 1.53732 1.87519 2.25540 2.50752 3.28904 3.33425 3.62660 3.65679 3.82910 3.96867 4.02739 4.08990 4.14543 4.16504 4.21135 4.30803 4.38627 4.44248 4.50036 4.56164 4.61157 4.64332 4.75846 4.76321 4.77079 4.81446 4.87400 4.91251 4.93100 4.96434 5.05077 5.07590 5.15249 5.24986 5.28911 5.30709 5.45841 5.49566 5.50103 5.56979 5.64656 5.70638 5.96382 6.36302 6.48264 6.61963 7.15499 7.23495 7.85589 8.30806 9.17813 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.003185 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.922433 B = 8788.374614 C = 9770.120353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 C -0.130 4.130 4 C 0.119 3.881 5 N -0.311 5.311 6 N -0.356 5.356 7 C 0.087 3.913 8 C 0.114 3.886 9 C -0.308 4.308 10 C 0.590 3.410 11 O -0.589 6.589 12 N -0.599 5.599 13 C 0.104 3.896 14 C -0.122 4.122 15 C -0.120 4.120 16 C 0.168 3.832 17 H 0.039 0.961 18 N -0.608 5.608 19 C 0.179 3.821 20 C -0.271 4.271 21 H 0.057 0.943 22 C -0.042 4.042 23 N -0.932 5.932 24 Si 0.966 3.034 25 H -0.280 1.280 26 H -0.289 1.289 27 H -0.277 1.277 28 C 0.116 3.884 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.224 0.776 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.001 0.999 47 H 0.024 0.976 48 H 0.026 0.974 49 H 0.250 0.750 50 H 0.070 0.930 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 12.815 23.817 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.046 4.046 3 C -0.188 4.188 4 C -0.048 4.048 5 N -0.133 5.133 6 N -0.134 5.134 7 C -0.052 4.052 8 C -0.038 4.038 9 C -0.323 4.323 10 C 0.380 3.620 11 O -0.469 6.469 12 N -0.331 5.331 13 C -0.018 4.018 14 C -0.161 4.161 15 C -0.159 4.159 16 C 0.061 3.939 17 H 0.058 0.942 18 N -0.331 5.331 19 C 0.034 3.966 20 C -0.402 4.402 21 H 0.075 0.925 22 C -0.238 4.238 23 N -0.578 5.578 24 Si 0.794 3.206 25 H -0.207 1.207 26 H -0.215 1.215 27 H -0.202 1.202 28 C -0.009 4.009 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.240 0.760 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.121 0.879 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.020 0.980 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.756 13.803 24.234 27.945 hybrid contribution 0.219 -0.987 -2.134 2.362 sum -1.538 12.816 22.100 25.593 Atomic orbital electron populations 1.21742 0.92505 1.01779 1.03049 1.19700 0.96941 0.96376 0.91604 1.21691 1.00417 0.93743 1.02935 1.22326 0.95334 0.93206 0.93907 1.77039 1.21196 1.15246 0.99772 1.48689 1.36626 1.19639 1.08443 1.22420 1.06205 1.05959 0.70570 1.23457 0.96147 0.95127 0.89109 1.20089 1.15186 1.03639 0.93380 1.17776 0.77521 0.81262 0.85466 1.90733 1.45244 1.68364 1.42600 1.48101 1.61325 1.06022 1.17614 1.22199 0.96017 0.95364 0.88192 1.21868 0.97701 0.98394 0.98103 1.21892 1.00254 0.98172 0.95600 1.20693 0.93748 0.91645 0.87857 0.94220 1.44004 1.38894 1.43564 1.06615 1.20492 0.88253 0.90469 0.97384 1.19402 1.32910 0.94574 0.93278 0.92507 1.25813 1.00545 0.94689 1.02710 1.70164 1.52700 0.99226 1.35662 0.85376 0.78538 0.76531 0.80183 1.20656 1.21469 1.20238 1.21886 0.97898 0.94553 0.86541 0.91475 0.90762 0.93555 0.91614 0.91584 0.93870 0.90686 0.88465 0.85981 0.88760 0.75985 0.87447 0.88736 0.92923 0.87940 0.91977 0.94243 0.98028 0.95733 0.95559 0.94053 0.91174 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.18 71.98 0.66 -2.31 16 2 C -0.03 -0.68 3.31 -11.54 -0.04 -0.72 16 3 C -0.13 -2.99 9.18 71.98 0.66 -2.33 16 4 C 0.12 3.19 5.77 43.52 0.25 3.44 16 5 N -0.31 -7.25 12.50 -46.67 -0.58 -7.84 16 6 N -0.36 -5.63 3.98 -367.79 -1.46 -7.10 16 7 C 0.09 0.43 11.44 127.77 1.46 1.89 16 8 C 0.11 1.88 9.11 84.27 0.77 2.65 16 9 C -0.31 -8.12 5.18 -20.15 -0.10 -8.22 16 10 C 0.59 19.79 7.15 86.66 0.62 20.41 16 11 O -0.59 -25.14 15.77 -4.04 -0.06 -25.20 16 12 N -0.60 -18.31 2.97 -822.62 -2.45 -20.76 16 13 C 0.10 2.15 5.87 86.35 0.51 2.66 16 14 C -0.12 -2.97 6.08 30.67 0.19 -2.78 16 15 C -0.12 -4.16 5.15 30.62 0.16 -4.00 16 16 C 0.17 7.13 2.75 45.07 0.12 7.25 16 17 H 0.04 1.84 7.89 -2.38 -0.02 1.82 16 18 N -0.61 -31.35 2.80 -702.34 -1.97 -33.32 16 19 C 0.18 8.87 8.10 127.77 1.03 9.91 16 20 C -0.27 -15.58 9.52 84.03 0.80 -14.78 16 21 H 0.06 3.28 7.84 -2.91 -0.02 3.25 16 22 C -0.04 -2.39 5.13 84.86 0.43 -1.95 16 23 N -0.93 -55.43 10.85 21.65 0.23 -55.20 16 24 Si 0.97 46.32 29.56 68.60 2.03 48.35 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 28 C 0.12 4.40 5.77 86.36 0.50 4.90 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 2.14 6.95 -2.38 -0.02 2.13 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.22 1.68 7.54 -2.91 -0.02 1.65 16 40 H 0.11 1.71 4.52 -2.39 -0.01 1.70 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 2.09 7.72 -2.39 -0.02 2.07 16 45 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 46 H 0.00 0.08 7.79 -2.39 -0.02 0.06 16 47 H 0.02 1.33 6.93 -2.39 -0.02 1.31 16 48 H 0.03 1.11 6.35 -2.38 -0.02 1.10 16 49 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 50 H 0.07 2.55 6.49 -2.38 -0.02 2.53 16 51 H 0.06 2.51 7.03 -2.39 -0.02 2.49 16 Total: -1.00 -79.09 399.63 4.67 -74.42 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.91 Total: 10.61 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 8.02 Total: 16.02 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -6.23 Total: -124.21 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -79.09 4.67 -74.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027676934.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.793 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds