Wall clock time and date at job start Tue Mar 31 2020 19:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.50704 * 109.46856 * 180.02562 * 3 2 1 5 5 C 1.38041 * 126.28709 * 269.99357 * 4 3 2 6 6 C 1.47432 * 126.42030 * 0.03007 * 5 4 3 7 7 O 1.21608 * 119.99226 * 359.70920 * 6 5 4 8 8 N 1.34769 * 120.00410 * 179.71404 * 6 5 4 9 9 C 1.46494 * 120.00254 * 179.97438 * 8 6 5 10 10 H 1.08997 * 108.46188 * 325.00039 * 9 8 6 11 11 C 1.52530 * 108.40538 * 207.35121 * 9 8 6 12 12 C 1.50129 * 105.41708 * 149.44190 * 11 9 8 13 13 C 1.54834 * 110.81254 * 97.68447 * 12 11 9 14 14 C 1.54899 * 110.14611 * 321.13339 * 13 12 11 15 15 N 1.43437 * 116.07600 * 318.63650 * 14 13 12 16 16 C 1.36938 * 120.54219 * 271.54970 * 15 14 13 17 17 H 1.08004 * 119.99692 * 336.29331 * 16 15 14 18 18 C 1.38808 * 119.99880 * 156.28480 * 16 15 14 19 19 N 1.31618 * 120.00575 * 338.65836 * 18 16 15 20 20 Si 1.86798 * 119.99517 * 158.65777 * 18 16 15 21 21 H 1.48501 * 109.47334 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47533 * 120.00110 * 20 18 16 23 23 H 1.48506 * 109.47254 * 239.99957 * 20 18 16 24 24 C 1.46245 * 108.52368 * 82.70801 * 9 8 6 25 25 C 1.41295 * 107.17093 * 179.76525 * 5 4 3 26 26 N 1.30451 * 108.01647 * 0.23947 * 25 5 4 27 27 N 1.34258 * 126.29527 * 90.17949 * 4 3 2 28 28 C 1.46506 * 125.75082 * 359.97438 * 27 4 3 29 29 H 1.09001 * 109.47039 * 60.00429 * 1 2 3 30 30 H 1.09001 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47252 * 300.00342 * 1 2 3 32 32 H 1.08994 * 109.47430 * 239.99439 * 2 1 3 33 33 H 1.09001 * 109.47039 * 119.99571 * 2 1 3 34 34 H 1.08992 * 109.46952 * 59.99532 * 3 2 1 35 35 H 1.09001 * 109.46840 * 299.99693 * 3 2 1 36 36 H 0.97006 * 119.99766 * 359.97438 * 8 6 5 37 37 H 1.08997 * 110.24727 * 268.41741 * 11 9 8 38 38 H 1.08997 * 110.24268 * 30.46679 * 11 9 8 39 39 H 1.08996 * 109.20852 * 337.33621 * 12 11 9 40 40 H 1.08998 * 109.20328 * 218.02920 * 12 11 9 41 41 H 1.08995 * 109.36051 * 200.92073 * 13 12 11 42 42 H 1.09006 * 109.24885 * 81.27150 * 13 12 11 43 43 H 1.08997 * 108.16066 * 196.92737 * 14 13 12 44 44 H 1.08998 * 108.15881 * 80.35187 * 14 13 12 45 45 H 0.96997 * 120.00163 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.84564 * 299.00204 * 24 9 8 47 47 H 1.09005 * 109.84384 * 59.98441 * 24 9 8 48 48 H 1.08002 * 125.99191 * 180.20925 * 25 5 4 49 49 H 1.09002 * 109.47072 * 270.26514 * 28 27 4 50 50 H 1.08996 * 109.47119 * 30.27090 * 28 27 4 51 51 H 1.08999 * 109.46855 * 150.26817 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3644 1.4424 1.1117 6 6 3.9268 1.4418 2.5196 7 8 2.7406 1.4466 2.7874 8 7 4.8412 1.4360 3.5096 9 6 4.4063 1.4359 4.9085 10 1 3.4979 2.0330 4.9876 11 6 5.4940 2.0944 5.7510 12 6 4.7732 2.7428 6.8972 13 6 4.8133 1.8394 8.1541 14 6 4.6428 0.3540 7.7491 15 7 3.6633 0.0852 6.7363 16 6 2.3570 -0.1464 7.0755 17 1 2.1113 -0.5048 8.0643 18 6 1.3487 0.0796 6.1487 19 7 1.5600 0.8851 5.1295 20 14 -0.3082 -0.7597 6.3479 21 1 -0.2897 -1.6089 7.5660 22 1 -1.3717 0.2687 6.4770 23 1 -0.5803 -1.6066 5.1588 24 6 4.0938 0.0613 5.2978 25 6 5.6993 1.4369 0.6484 26 7 5.6737 1.4390 -0.6558 27 7 4.3413 1.4460 -1.0831 28 6 3.8891 1.4501 -2.4766 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 5.7874 1.4318 3.2958 37 1 6.1916 1.3429 6.1206 38 1 6.0225 2.8457 5.1642 39 1 3.7352 2.9185 6.6148 40 1 5.2482 3.6968 7.1259 41 1 4.0072 2.1245 8.8299 42 1 5.7707 1.9686 8.6590 43 1 4.3737 -0.2124 8.6406 44 1 5.6060 -0.0147 7.3966 45 1 0.8553 1.0433 4.4820 46 1 3.2860 -0.3249 4.6761 47 1 4.9790 -0.5651 5.1868 48 1 6.5854 1.4322 1.2659 49 1 3.7728 0.4234 -2.8238 50 1 2.9326 1.9680 -2.5467 51 1 4.6256 1.9619 -3.0960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034285670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:56 Heat of formation + Delta-G solvation = 64.414550 kcal Electronic energy + Delta-G solvation = -30987.724092 eV Core-core repulsion = 27117.615339 eV Total energy + Delta-G solvation = -3870.108753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.31162 -38.92099 -37.11144 -35.16718 -33.80378 -33.21916 -32.98527 -30.70070 -30.46942 -29.60912 -27.02261 -26.41915 -25.91622 -24.09697 -23.06778 -21.99300 -21.58378 -20.41660 -19.57604 -19.25774 -18.61974 -17.18021 -16.49586 -15.68107 -15.57519 -15.17520 -14.77195 -14.71487 -14.39911 -14.20088 -13.82765 -13.60969 -13.53915 -13.19981 -13.10943 -12.82634 -12.76943 -12.49701 -12.22069 -12.12573 -12.07780 -11.75331 -11.35891 -11.19986 -11.16861 -11.15267 -10.78618 -10.65493 -10.56649 -10.43900 -10.10647 -10.04490 -9.70301 -9.66950 -9.44320 -9.32374 -9.27344 -8.73958 -8.38147 -8.31015 -7.93376 -6.52385 -5.51817 -2.95407 1.75677 2.40341 2.45785 3.50056 3.58981 3.60343 4.08047 4.26241 4.49756 4.60088 4.69796 4.91148 4.96161 5.05481 5.18213 5.20945 5.37429 5.46099 5.54458 5.58278 5.65389 5.67832 5.72138 5.80052 5.83418 5.93737 5.97380 6.07221 6.21314 6.26874 6.31905 6.41443 6.44714 6.46518 6.51490 6.57584 6.61813 6.72418 6.95336 6.95681 7.03963 7.08249 7.22714 7.28006 7.48519 7.65974 7.76014 7.80766 8.04727 8.54513 8.63310 9.26526 9.44299 10.05397 10.58394 11.52631 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.004573 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.878158 B = 6121.197814 C = 8139.709134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.062 4.062 4 C 0.150 3.850 5 C -0.280 4.280 6 C 0.571 3.429 7 O -0.490 6.490 8 N -0.731 5.731 9 C 0.133 3.867 10 H 0.129 0.871 11 C -0.123 4.123 12 C -0.104 4.104 13 C -0.144 4.144 14 C 0.158 3.842 15 N -0.581 5.581 16 C -0.277 4.277 17 H 0.064 0.936 18 C 0.013 3.987 19 N -0.854 5.854 20 Si 0.884 3.116 21 H -0.282 1.282 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.159 3.841 25 C 0.077 3.923 26 N -0.308 5.308 27 N -0.369 5.369 28 C 0.099 3.901 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.379 0.621 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.030 0.970 44 H 0.025 0.975 45 H 0.261 0.739 46 H 0.095 0.905 47 H 0.002 0.998 48 H 0.186 0.814 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 2.593 -12.795 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.101 4.101 4 C 0.019 3.981 5 C -0.295 4.295 6 C 0.355 3.645 7 O -0.364 6.364 8 N -0.383 5.383 9 C 0.029 3.971 10 H 0.146 0.854 11 C -0.161 4.161 12 C -0.142 4.142 13 C -0.185 4.185 14 C 0.029 3.971 15 N -0.302 5.302 16 C -0.407 4.407 17 H 0.082 0.918 18 C -0.189 4.189 19 N -0.495 5.495 20 Si 0.715 3.285 21 H -0.208 1.208 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.035 3.965 25 C -0.110 4.110 26 N -0.128 5.128 27 N -0.149 5.149 28 C -0.042 4.042 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.210 0.790 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.020 0.980 48 H 0.202 0.798 49 H 0.093 0.907 50 H 0.106 0.894 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.900 2.629 -13.950 15.373 hybrid contribution -0.654 -0.296 0.568 0.915 sum 5.246 2.333 -13.383 14.562 Atomic orbital electron populations 1.21722 0.95189 1.01726 1.01939 1.21348 0.96165 0.95004 1.02204 1.20532 0.85784 0.99150 1.04618 1.21520 0.94578 0.95786 0.86192 1.20474 0.92281 1.21865 0.94907 1.17200 0.86561 0.77820 0.82935 1.90934 1.15127 1.47277 1.83022 1.46236 1.08021 1.76674 1.07352 1.21115 0.98328 1.01257 0.76357 0.85370 1.21354 0.97964 0.99303 0.97463 1.21277 1.01389 0.96475 0.95092 1.22907 0.98897 0.99891 0.96845 1.20399 0.92059 0.92120 0.92540 1.44036 1.05404 1.80354 1.00392 1.19016 0.82087 1.39891 0.99686 0.91827 1.24959 0.96863 0.98160 0.98905 1.69856 1.32899 1.32704 1.13997 0.86537 0.85458 0.79392 0.77154 1.20769 1.22141 1.21883 1.20424 0.97003 0.93023 0.86092 1.23983 0.97534 0.97673 0.91850 1.77082 0.96169 1.26074 1.13490 1.48247 1.04081 1.56474 1.06099 1.21865 1.01041 1.03462 0.77852 0.93298 0.92763 0.91699 0.93194 0.90540 0.86538 0.91544 0.78993 0.92177 0.92904 0.90658 0.94632 0.93104 0.94082 0.95159 0.95701 0.92787 0.88704 0.98011 0.79765 0.90661 0.89412 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 37.16 0.37 -1.46 16 2 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 3 C -0.06 -0.83 4.90 -27.88 -0.14 -0.97 16 4 C 0.15 2.20 6.26 -81.60 -0.51 1.69 16 5 C -0.28 -4.54 6.13 -105.06 -0.64 -5.18 16 6 C 0.57 10.90 7.66 -12.52 -0.10 10.81 16 7 O -0.49 -11.11 12.14 5.27 0.06 -11.04 16 8 N -0.73 -12.95 4.89 -58.29 -0.29 -13.24 16 9 C 0.13 2.74 1.82 -71.39 -0.13 2.61 16 10 H 0.13 3.24 4.62 -51.93 -0.24 3.00 16 11 C -0.12 -2.17 5.23 -28.40 -0.15 -2.32 16 12 C -0.10 -1.97 5.65 -27.19 -0.15 -2.13 16 13 C -0.14 -2.72 6.41 -24.76 -0.16 -2.88 16 14 C 0.16 3.32 5.17 -4.66 -0.02 3.30 16 15 N -0.58 -14.24 2.60 -175.07 -0.45 -14.69 16 16 C -0.28 -7.57 9.61 -15.06 -0.14 -7.72 16 17 H 0.06 1.76 7.90 -52.48 -0.41 1.34 16 18 C 0.01 0.36 4.86 -17.43 -0.08 0.28 16 19 N -0.85 -23.67 7.79 55.49 0.43 -23.24 16 20 Si 0.88 21.96 29.60 -169.99 -5.03 16.93 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 C 0.16 3.72 4.63 -5.20 -0.02 3.69 16 25 C 0.08 1.07 11.50 -16.98 -0.20 0.87 16 26 N -0.31 -4.43 12.50 30.86 0.39 -4.04 16 27 N -0.37 -4.79 3.98 -63.34 -0.25 -5.04 16 28 C 0.10 0.81 11.24 59.85 0.67 1.48 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.12 1.90 6.50 -51.93 -0.34 1.56 16 35 H 0.07 0.69 7.05 -51.93 -0.37 0.33 16 36 H 0.38 5.40 7.53 -40.82 -0.31 5.09 16 37 H 0.06 1.03 6.29 -51.93 -0.33 0.70 16 38 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 39 H 0.07 1.71 6.83 -51.93 -0.35 1.35 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.03 0.64 7.99 -51.93 -0.41 0.23 16 44 H 0.02 0.48 6.89 -51.93 -0.36 0.13 16 45 H 0.26 7.37 8.07 -40.82 -0.33 7.04 16 46 H 0.09 2.57 5.79 -51.93 -0.30 2.27 16 47 H 0.00 0.04 8.12 -51.93 -0.42 -0.38 16 48 H 0.19 1.96 7.50 -52.49 -0.39 1.56 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 0.55 7.02 -51.93 -0.36 0.19 16 51 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -31.45 389.26 -9.21 -40.67 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -8.37 Total: 7.36 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.57 Total: 0.47 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.17 Total: -60.25 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.06 Total: -11.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.45 -9.21 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034285670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.082 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds