Wall clock time and date at job start Tue Mar 31 2020 19:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.50704 * 109.46856 * 180.02562 * 3 2 1 5 5 C 1.38041 * 126.28709 * 269.99357 * 4 3 2 6 6 C 1.47432 * 126.42030 * 0.03007 * 5 4 3 7 7 O 1.21608 * 119.99226 * 359.70920 * 6 5 4 8 8 N 1.34769 * 120.00410 * 179.71404 * 6 5 4 9 9 C 1.46494 * 120.00254 * 179.97438 * 8 6 5 10 10 H 1.08997 * 108.46188 * 325.00039 * 9 8 6 11 11 C 1.52530 * 108.40538 * 207.35121 * 9 8 6 12 12 C 1.50129 * 105.41708 * 149.44190 * 11 9 8 13 13 C 1.54834 * 110.81254 * 97.68447 * 12 11 9 14 14 C 1.54899 * 110.14611 * 321.13339 * 13 12 11 15 15 N 1.43437 * 116.07600 * 318.63650 * 14 13 12 16 16 C 1.36938 * 120.54219 * 271.54970 * 15 14 13 17 17 H 1.08004 * 119.99692 * 336.29331 * 16 15 14 18 18 C 1.38808 * 119.99880 * 156.28480 * 16 15 14 19 19 N 1.31618 * 120.00575 * 338.65836 * 18 16 15 20 20 Si 1.86798 * 119.99517 * 158.65777 * 18 16 15 21 21 H 1.48501 * 109.47334 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47533 * 120.00110 * 20 18 16 23 23 H 1.48506 * 109.47254 * 239.99957 * 20 18 16 24 24 C 1.46245 * 108.52368 * 82.70801 * 9 8 6 25 25 C 1.41295 * 107.17093 * 179.76525 * 5 4 3 26 26 N 1.30451 * 108.01647 * 0.23947 * 25 5 4 27 27 N 1.34258 * 126.29527 * 90.17949 * 4 3 2 28 28 C 1.46506 * 125.75082 * 359.97438 * 27 4 3 29 29 H 1.09001 * 109.47039 * 60.00429 * 1 2 3 30 30 H 1.09001 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47252 * 300.00342 * 1 2 3 32 32 H 1.08994 * 109.47430 * 239.99439 * 2 1 3 33 33 H 1.09001 * 109.47039 * 119.99571 * 2 1 3 34 34 H 1.08992 * 109.46952 * 59.99532 * 3 2 1 35 35 H 1.09001 * 109.46840 * 299.99693 * 3 2 1 36 36 H 0.97006 * 119.99766 * 359.97438 * 8 6 5 37 37 H 1.08997 * 110.24727 * 268.41741 * 11 9 8 38 38 H 1.08997 * 110.24268 * 30.46679 * 11 9 8 39 39 H 1.08996 * 109.20852 * 337.33621 * 12 11 9 40 40 H 1.08998 * 109.20328 * 218.02920 * 12 11 9 41 41 H 1.08995 * 109.36051 * 200.92073 * 13 12 11 42 42 H 1.09006 * 109.24885 * 81.27150 * 13 12 11 43 43 H 1.08997 * 108.16066 * 196.92737 * 14 13 12 44 44 H 1.08998 * 108.15881 * 80.35187 * 14 13 12 45 45 H 0.96997 * 120.00163 * 180.02562 * 19 18 16 46 46 H 1.09005 * 109.84564 * 299.00204 * 24 9 8 47 47 H 1.09005 * 109.84384 * 59.98441 * 24 9 8 48 48 H 1.08002 * 125.99191 * 180.20925 * 25 5 4 49 49 H 1.09002 * 109.47072 * 270.26514 * 28 27 4 50 50 H 1.08996 * 109.47119 * 30.27090 * 28 27 4 51 51 H 1.08999 * 109.46855 * 150.26817 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3644 1.4424 1.1117 6 6 3.9268 1.4418 2.5196 7 8 2.7406 1.4466 2.7874 8 7 4.8412 1.4360 3.5096 9 6 4.4063 1.4359 4.9085 10 1 3.4979 2.0330 4.9876 11 6 5.4940 2.0944 5.7510 12 6 4.7732 2.7428 6.8972 13 6 4.8133 1.8394 8.1541 14 6 4.6428 0.3540 7.7491 15 7 3.6633 0.0852 6.7363 16 6 2.3570 -0.1464 7.0755 17 1 2.1113 -0.5048 8.0643 18 6 1.3487 0.0796 6.1487 19 7 1.5600 0.8851 5.1295 20 14 -0.3082 -0.7597 6.3479 21 1 -0.2897 -1.6089 7.5660 22 1 -1.3717 0.2687 6.4770 23 1 -0.5803 -1.6066 5.1588 24 6 4.0938 0.0613 5.2978 25 6 5.6993 1.4369 0.6484 26 7 5.6737 1.4390 -0.6558 27 7 4.3413 1.4460 -1.0831 28 6 3.8891 1.4501 -2.4766 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 5.7874 1.4318 3.2958 37 1 6.1916 1.3429 6.1206 38 1 6.0225 2.8457 5.1642 39 1 3.7352 2.9185 6.6148 40 1 5.2482 3.6968 7.1259 41 1 4.0072 2.1245 8.8299 42 1 5.7707 1.9686 8.6590 43 1 4.3737 -0.2124 8.6406 44 1 5.6060 -0.0147 7.3966 45 1 0.8553 1.0433 4.4820 46 1 3.2860 -0.3249 4.6761 47 1 4.9790 -0.5651 5.1868 48 1 6.5854 1.4322 1.2659 49 1 3.7728 0.4234 -2.8238 50 1 2.9326 1.9680 -2.5467 51 1 4.6256 1.9619 -3.0960 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034285670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:53 Heat of formation + Delta-G solvation = 45.052598 kcal Electronic energy + Delta-G solvation = -30988.563689 eV Core-core repulsion = 27117.615339 eV Total energy + Delta-G solvation = -3870.948350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.40683 -40.48704 -38.70904 -36.28081 -35.51210 -34.71007 -34.16661 -32.56633 -31.75800 -31.04363 -28.16997 -27.68640 -27.40242 -25.76498 -24.71738 -23.35138 -22.67250 -21.80154 -21.08050 -20.61343 -20.11574 -18.52502 -18.32706 -16.89332 -16.79473 -16.63538 -16.48380 -15.95697 -15.80283 -15.49011 -15.39391 -15.21866 -14.86202 -14.60885 -14.41024 -14.03896 -13.91444 -13.80237 -13.47671 -13.44848 -13.37261 -13.13972 -13.07096 -12.98278 -12.62708 -12.42918 -12.34907 -12.21441 -11.98147 -11.88571 -11.79670 -11.56230 -11.53549 -11.22374 -11.12282 -11.03754 -10.38731 -10.32946 -10.20989 -9.68674 -9.41782 -8.47504 -7.60766 -5.05577 0.62558 1.30687 1.45407 1.47968 1.49707 1.57352 2.59155 2.72128 2.86050 3.45967 3.53517 3.59132 3.87353 3.92033 4.09058 4.09678 4.20907 4.27272 4.30770 4.34698 4.35303 4.42782 4.57402 4.64929 4.66265 4.69212 4.75545 4.78548 4.81007 4.91486 4.92355 4.99370 4.99664 5.10927 5.18409 5.33923 5.35196 5.37652 5.43948 5.48411 5.51102 5.54035 5.71069 5.77380 5.84753 5.96016 6.10086 6.11529 6.55936 6.58946 7.11601 7.32218 7.91738 8.04847 8.55242 9.37115 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.004573 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.878158 B = 6121.197814 C = 8139.709134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C -0.056 4.056 4 C 0.149 3.851 5 C -0.311 4.311 6 C 0.564 3.436 7 O -0.535 6.535 8 N -0.721 5.721 9 C 0.145 3.855 10 H 0.082 0.918 11 C -0.110 4.110 12 C -0.100 4.100 13 C -0.136 4.136 14 C 0.151 3.849 15 N -0.596 5.596 16 C -0.288 4.288 17 H 0.055 0.945 18 C -0.029 4.029 19 N -0.857 5.857 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.300 1.300 24 C 0.169 3.831 25 C 0.083 3.917 26 N -0.320 5.320 27 N -0.361 5.361 28 C 0.085 3.915 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.063 0.937 41 H 0.033 0.967 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.047 0.953 45 H 0.247 0.753 46 H 0.049 0.951 47 H 0.015 0.985 48 H 0.214 0.786 49 H 0.091 0.909 50 H 0.110 0.890 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 3.013 -14.391 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.095 4.095 4 C 0.016 3.984 5 C -0.325 4.325 6 C 0.351 3.649 7 O -0.411 6.411 8 N -0.374 5.374 9 C 0.041 3.959 10 H 0.100 0.900 11 C -0.148 4.148 12 C -0.138 4.138 13 C -0.177 4.177 14 C 0.023 3.977 15 N -0.318 5.318 16 C -0.418 4.418 17 H 0.073 0.927 18 C -0.230 4.230 19 N -0.498 5.498 20 Si 0.764 3.236 21 H -0.201 1.201 22 H -0.225 1.225 23 H -0.227 1.227 24 C 0.044 3.956 25 C -0.104 4.104 26 N -0.140 5.140 27 N -0.141 5.141 28 C -0.054 4.054 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.233 0.767 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.034 0.966 48 H 0.230 0.770 49 H 0.110 0.890 50 H 0.128 0.872 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.135 3.051 -15.563 17.823 hybrid contribution -1.323 -0.456 1.016 1.729 sum 6.811 2.596 -14.547 16.271 Atomic orbital electron populations 1.21698 0.94385 1.02030 1.02112 1.21254 0.96824 0.94812 1.01094 1.20446 0.85334 0.99033 1.04672 1.21642 0.95047 0.95068 0.86643 1.20329 0.93995 1.24641 0.93584 1.17683 0.86117 0.76786 0.84336 1.90921 1.17069 1.49222 1.83921 1.46007 1.09015 1.76274 1.06133 1.20606 0.98043 0.98892 0.78391 0.90032 1.21280 0.96967 0.99972 0.96600 1.21204 0.99025 0.98077 0.95535 1.22811 1.00294 0.97861 0.96729 1.20554 0.91971 0.93710 0.91477 1.44137 1.05069 1.81084 1.01545 1.19114 0.83682 1.39702 0.99300 0.92745 1.25503 0.99210 0.99011 0.99242 1.70063 1.32605 1.33150 1.13947 0.85752 0.82735 0.78367 0.76737 1.20060 1.22493 1.22710 1.20241 0.95610 0.94677 0.85052 1.24365 0.97450 0.96624 0.91958 1.77050 0.97042 1.26407 1.13527 1.48595 1.03344 1.54859 1.07281 1.22334 1.02562 1.05145 0.75384 0.90124 0.92425 0.94434 0.90727 0.95018 0.90039 0.87810 0.76659 0.90559 0.90103 0.95368 0.91785 0.94815 0.90205 0.95777 0.93473 0.94249 0.93215 0.96649 0.76958 0.89042 0.87156 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.91 71.98 0.71 -2.86 16 2 C -0.10 -2.74 5.92 30.59 0.18 -2.56 16 3 C -0.06 -1.50 4.90 29.85 0.15 -1.35 16 4 C 0.15 4.28 6.26 42.14 0.26 4.55 16 5 C -0.31 -10.06 6.13 -20.15 -0.12 -10.18 16 6 C 0.56 22.42 7.66 86.67 0.66 23.09 16 7 O -0.53 -26.04 12.14 -4.06 -0.05 -26.09 16 8 N -0.72 -25.66 4.89 -456.60 -2.23 -27.90 16 9 C 0.15 6.09 1.82 42.76 0.08 6.17 16 10 H 0.08 4.33 4.62 -2.39 -0.01 4.32 16 11 C -0.11 -3.67 5.23 29.51 0.15 -3.51 16 12 C -0.10 -3.67 5.65 30.30 0.17 -3.50 16 13 C -0.14 -4.90 6.41 31.87 0.20 -4.70 16 14 C 0.15 6.19 5.17 87.59 0.45 6.64 16 15 N -0.60 -29.80 2.60 -707.81 -1.84 -31.64 16 16 C -0.29 -16.25 9.61 84.03 0.81 -15.44 16 17 H 0.05 3.11 7.90 -2.91 -0.02 3.09 16 18 C -0.03 -1.65 4.86 84.86 0.41 -1.24 16 19 N -0.86 -50.49 7.79 21.65 0.17 -50.32 16 20 Si 0.93 47.19 29.60 68.60 2.03 49.22 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 23 H -0.30 -15.39 7.11 99.48 0.71 -14.68 16 24 C 0.17 8.07 4.63 83.58 0.39 8.46 16 25 C 0.08 2.18 11.50 85.65 0.99 3.16 16 26 N -0.32 -8.52 12.50 -56.27 -0.70 -9.23 16 27 N -0.36 -8.61 3.98 -354.30 -1.41 -10.02 16 28 C 0.09 1.11 11.24 127.77 1.44 2.54 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 2.83 6.50 -2.39 -0.02 2.81 16 35 H 0.10 1.94 7.05 -2.39 -0.02 1.92 16 36 H 0.40 10.75 7.53 -92.70 -0.70 10.06 16 37 H 0.08 2.33 6.29 -2.39 -0.02 2.31 16 38 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 39 H 0.03 1.30 6.83 -2.39 -0.02 1.28 16 40 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 2.28 8.14 -2.38 -0.02 2.27 16 43 H 0.02 1.00 7.99 -2.39 -0.02 0.99 16 44 H 0.05 1.72 6.89 -2.39 -0.02 1.70 16 45 H 0.25 14.99 8.07 -92.71 -0.75 14.24 16 46 H 0.05 2.84 5.79 -2.38 -0.01 2.82 16 47 H 0.02 0.68 8.12 -2.38 -0.02 0.66 16 48 H 0.21 3.97 7.50 -2.91 -0.02 3.95 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.11 0.95 7.02 -2.39 -0.02 0.93 16 51 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -74.31 389.26 3.15 -71.16 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.26 Total: 25.55 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.93 Total: 9.26 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -6.02 Total: -129.10 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -74.31 3.15 -71.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034285670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.214 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds