Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 C 1.52997 * 109.47353 * 239.99572 * 2 1 3 5 5 C 1.50706 * 109.46981 * 119.99602 * 2 1 3 6 6 C 1.39674 * 126.06816 * 75.00132 * 5 2 1 7 7 C 1.38399 * 105.36007 * 179.97438 * 6 5 2 8 8 C 1.47164 * 126.88692 * 180.02562 * 7 6 5 9 9 O 1.21630 * 119.99690 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46507 * 120.00354 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.23982 * 324.65325 * 11 10 8 13 13 C 1.54842 * 109.35899 * 204.99812 * 11 10 8 14 14 C 1.50127 * 110.81178 * 200.92182 * 13 11 10 15 15 C 1.52524 * 105.41056 * 97.68840 * 14 13 11 16 16 C 1.46239 * 114.27600 * 270.58974 * 15 14 13 17 17 N 1.50172 * 107.53207 * 58.40879 * 16 15 14 18 18 C 1.36931 * 120.53516 * 109.56848 * 17 16 15 19 19 H 1.08004 * 119.99977 * 172.84823 * 18 17 16 20 20 C 1.38819 * 120.00300 * 352.84705 * 18 17 16 21 21 N 1.31616 * 119.99532 * 319.30052 * 20 18 17 22 22 Si 1.86802 * 120.00013 * 139.29464 * 20 18 17 23 23 H 1.48494 * 109.46784 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47014 * 60.00199 * 22 20 18 25 25 H 1.48496 * 109.47313 * 300.00228 * 22 20 18 26 26 C 1.43432 * 118.92783 * 289.84141 * 17 16 15 27 27 N 1.36608 * 106.23237 * 0.26240 * 7 6 5 28 28 H 0.96996 * 125.18674 * 179.73390 * 27 7 6 29 29 N 1.28442 * 109.61493 * 359.54966 * 27 7 6 30 30 H 1.09005 * 109.46973 * 299.99959 * 1 2 3 31 31 H 1.08998 * 109.47223 * 60.00236 * 1 2 3 32 32 H 1.09003 * 109.47484 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47672 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46980 * 299.99730 * 3 2 1 35 35 H 1.08998 * 109.47315 * 59.99464 * 3 2 1 36 36 H 1.08997 * 109.47034 * 300.00401 * 4 2 1 37 37 H 1.08998 * 109.46800 * 59.99933 * 4 2 1 38 38 H 1.09000 * 109.47613 * 180.02562 * 4 2 1 39 39 H 1.07998 * 127.31715 * 359.97438 * 6 5 2 40 40 H 0.97006 * 120.00326 * 359.97438 * 10 8 7 41 41 H 1.09003 * 109.20752 * 80.58505 * 13 11 10 42 42 H 1.08999 * 109.20807 * 321.27058 * 13 11 10 43 43 H 1.08992 * 110.25071 * 338.71453 * 14 13 11 44 44 H 1.08998 * 110.36908 * 216.71606 * 14 13 11 45 45 H 1.08999 * 108.52632 * 149.35177 * 15 14 13 46 46 H 1.08994 * 108.40503 * 31.74138 * 15 14 13 47 47 H 1.09003 * 109.84536 * 298.90100 * 16 15 14 48 48 H 1.09005 * 109.90325 * 177.94904 * 16 15 14 49 49 H 0.97000 * 120.00306 * 353.65432 * 21 20 18 50 50 H 1.08998 * 108.16066 * 213.03328 * 26 17 16 51 51 H 1.09004 * 108.15966 * 329.60352 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 6 2.0309 -2.0911 1.4412 7 6 2.5823 -2.2709 2.6978 8 6 2.8047 -3.5503 3.3900 9 8 2.4909 -4.5952 2.8524 10 7 3.3551 -3.5642 4.6201 11 6 3.5771 -4.8380 5.3091 12 1 2.7667 -5.5247 5.0643 13 6 3.6012 -4.5969 6.8385 14 6 4.3078 -5.7179 7.5441 15 6 5.7304 -5.2187 7.7749 16 6 6.6570 -5.5177 6.6838 17 7 6.1051 -4.8892 5.4366 18 6 6.7196 -3.8021 4.8748 19 1 6.3862 -3.4278 3.9181 20 6 7.7711 -3.1810 5.5349 21 7 7.7181 -3.0058 6.8383 22 14 9.2613 -2.5942 4.5733 23 1 10.2361 -1.9700 5.5035 24 1 8.8347 -1.5964 3.5596 25 1 9.8978 -3.7503 3.8926 26 6 4.9205 -5.4423 4.8466 27 7 2.8739 -1.0222 3.1690 28 1 3.2696 -0.8293 4.0333 29 7 2.5477 -0.1431 2.2912 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 -1.7489 -1.2491 37 1 1.6766 -0.2075 -2.1391 38 1 3.1300 -0.7217 -1.2490 39 1 1.6751 -2.8559 0.7667 40 1 3.6051 -2.7308 5.0491 41 1 2.5776 -4.5299 7.2071 42 1 4.1183 -3.6601 7.0457 43 1 4.3180 -6.6104 6.9185 44 1 3.8236 -5.9313 8.4970 45 1 6.1131 -5.6736 8.6885 46 1 5.6975 -4.1383 7.9149 47 1 6.7360 -6.5967 6.5506 48 1 7.6389 -5.0995 6.9056 49 1 6.9082 -3.2258 7.3247 50 1 4.9893 -5.3180 3.7659 51 1 4.9021 -6.5112 5.0597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034286674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = 52.071943 kcal Electronic energy + Delta-G solvation = -30283.380777 eV Core-core repulsion = 26412.736808 eV Total energy + Delta-G solvation = -3870.643969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.53307 -39.49646 -37.95569 -36.99745 -34.62372 -33.41616 -31.50811 -30.96644 -30.80244 -29.70393 -27.36459 -27.34730 -26.18022 -24.55950 -23.40483 -22.85334 -22.22138 -20.68386 -20.26895 -19.44823 -18.75972 -18.34689 -17.17607 -15.91252 -15.78639 -15.66182 -15.20838 -15.00426 -14.57604 -14.43988 -14.05459 -13.98553 -13.69955 -13.57396 -13.47724 -13.36734 -12.77927 -12.48200 -12.40563 -12.25258 -12.24560 -11.92674 -11.74751 -11.40037 -11.20943 -11.13492 -11.09784 -10.96045 -10.65361 -10.54543 -10.47771 -10.26500 -10.08719 -9.89756 -9.85172 -9.73982 -9.52985 -9.13471 -9.06896 -8.81803 -8.23331 -7.04585 -6.25182 -3.10381 1.39846 2.59452 2.86067 3.31550 3.45922 3.49149 3.54400 3.69460 4.34643 4.54114 4.65515 4.86720 4.90745 5.06109 5.08144 5.12433 5.22633 5.26984 5.31911 5.50096 5.51507 5.56892 5.63061 5.68722 5.69939 5.80255 5.83210 5.85191 5.89193 5.91723 5.97622 6.05473 6.16771 6.21792 6.23537 6.26954 6.28873 6.49962 6.51357 6.58513 6.60380 6.77180 6.82577 6.89650 7.00991 7.16387 7.18314 7.71994 7.92567 8.05338 8.38368 8.45262 8.99444 9.77499 10.22431 11.05036 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.003530 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.723222 B = 7930.841023 C = 9312.264570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.018 3.982 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.035 3.965 6 C -0.156 4.156 7 C -0.025 4.025 8 C 0.586 3.414 9 O -0.534 6.534 10 N -0.699 5.699 11 C 0.115 3.885 12 H 0.079 0.921 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.135 4.135 16 C 0.129 3.871 17 N -0.586 5.586 18 C -0.355 4.355 19 H 0.062 0.938 20 C -0.013 4.013 21 N -0.900 5.900 22 Si 1.034 2.966 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.295 1.295 26 C 0.153 3.847 27 N -0.376 5.376 28 H 0.445 0.555 29 N -0.268 5.268 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.160 0.840 40 H 0.394 0.606 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.024 0.976 48 H 0.095 0.905 49 H 0.273 0.727 50 H 0.042 0.958 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.998 3.399 -6.521 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.016 3.984 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.124 4.124 6 C -0.185 4.185 7 C -0.154 4.154 8 C 0.371 3.629 9 O -0.410 6.410 10 N -0.347 5.347 11 C 0.007 3.993 12 H 0.097 0.903 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.174 4.174 16 C 0.005 3.995 17 N -0.308 5.308 18 C -0.483 4.483 19 H 0.080 0.920 20 C -0.216 4.216 21 N -0.542 5.542 22 Si 0.864 3.136 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.222 1.222 26 C 0.022 3.978 27 N -0.092 5.092 28 H 0.290 0.710 29 N -0.100 5.100 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.177 0.823 40 H 0.227 0.773 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.043 0.957 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.381 4.319 -6.294 13.704 hybrid contribution -1.328 -0.822 0.282 1.587 sum -12.710 3.496 -6.012 14.488 Atomic orbital electron populations 1.21865 0.93486 1.02252 1.01879 1.18874 0.95236 0.94788 0.89457 1.21770 1.01461 0.94306 1.01717 1.21885 1.01575 1.00461 0.95837 1.21850 1.03301 0.91646 0.95563 1.21901 1.04764 0.96355 0.95452 1.21894 1.09061 0.86714 0.97755 1.16933 0.78130 0.86550 0.81331 1.90796 1.52662 1.31713 1.65827 1.45912 1.61281 1.10713 1.16814 1.22886 1.00803 0.84307 0.91289 0.90313 1.21675 0.99371 1.00250 0.93686 1.20940 0.96683 0.98052 0.99145 1.21090 0.95085 1.02113 0.99151 1.20602 0.98577 0.94937 0.85390 1.44352 1.24336 1.33293 1.28778 1.19860 1.16199 1.09640 1.02590 0.92009 1.25381 1.01628 0.98003 0.96557 1.70885 1.32418 1.41614 1.09242 0.83985 0.78121 0.75947 0.75585 1.21297 1.22280 1.22220 1.20622 0.85120 0.95024 0.97025 1.43644 1.46110 1.02973 1.16457 0.70969 1.73048 1.16704 1.20097 1.00200 0.92559 0.92031 0.92243 0.92398 0.92575 0.92052 0.92079 0.92002 0.92275 0.82250 0.77253 0.93533 0.91046 0.91644 0.92517 0.94104 0.91091 0.95732 0.88737 0.91391 0.93974 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.46 37.15 0.31 -0.91 16 2 C 0.02 0.19 0.96 -155.66 -0.15 0.04 16 3 C -0.14 -1.35 8.04 37.16 0.30 -1.05 16 4 C -0.14 -1.31 8.20 37.16 0.30 -1.01 16 5 C 0.03 0.47 5.65 -82.47 -0.47 0.00 16 6 C -0.16 -2.26 10.12 -38.99 -0.39 -2.66 16 7 C -0.03 -0.40 7.16 -82.06 -0.59 -0.98 16 8 C 0.59 10.26 7.62 -12.64 -0.10 10.17 16 9 O -0.53 -10.78 16.58 5.25 0.09 -10.70 16 10 N -0.70 -11.61 5.08 -53.31 -0.27 -11.88 16 11 C 0.11 1.98 2.91 -66.22 -0.19 1.79 16 12 H 0.08 1.36 7.57 -51.93 -0.39 0.97 16 13 C -0.11 -1.77 5.23 -27.19 -0.14 -1.92 16 14 C -0.11 -1.73 5.76 -28.40 -0.16 -1.89 16 15 C -0.14 -2.51 4.96 -30.19 -0.15 -2.66 16 16 C 0.13 2.77 5.22 -5.20 -0.03 2.74 16 17 N -0.59 -13.35 2.62 -175.40 -0.46 -13.81 16 18 C -0.36 -9.12 9.46 -15.06 -0.14 -9.26 16 19 H 0.06 1.67 8.05 -52.48 -0.42 1.25 16 20 C -0.01 -0.34 4.53 -17.43 -0.08 -0.42 16 21 N -0.90 -24.42 11.99 55.49 0.67 -23.75 16 22 Si 1.03 24.33 30.06 -169.99 -5.11 19.22 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.15 3.10 4.75 -4.93 -0.02 3.07 16 27 N -0.38 -5.28 6.85 33.48 0.23 -5.05 16 28 H 0.45 5.33 8.22 -190.46 -1.57 3.76 16 29 N -0.27 -3.86 11.48 33.64 0.39 -3.47 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.06 0.56 7.60 -51.93 -0.39 0.16 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.16 2.15 7.79 -52.49 -0.41 1.74 16 40 H 0.39 6.10 7.63 -40.82 -0.31 5.79 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.27 6.58 -51.93 -0.34 0.93 16 43 H 0.06 1.03 6.28 -51.93 -0.33 0.70 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.48 4.65 -51.93 -0.24 1.23 16 47 H 0.02 0.50 8.13 -51.93 -0.42 0.07 16 48 H 0.09 2.33 5.61 -51.93 -0.29 2.04 16 49 H 0.27 7.15 4.95 -40.82 -0.20 6.94 16 50 H 0.04 0.96 7.81 -51.93 -0.41 0.55 16 51 H 0.04 0.77 6.89 -51.93 -0.36 0.41 16 LS Contribution 392.24 15.07 5.91 5.91 Total: -1.00 -29.78 392.24 -9.78 -39.56 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -9.53 Total: 8.90 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.70 Total: -4.94 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.55 Total: -57.96 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.11 Total: 19.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.78 -9.78 -39.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034286674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.634 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds