Wall clock time and date at job start Tue Mar 31 2020 20:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 C 1.52997 * 109.47353 * 239.99572 * 2 1 3 5 5 C 1.50706 * 109.46981 * 119.99602 * 2 1 3 6 6 C 1.39674 * 126.06816 * 75.00132 * 5 2 1 7 7 C 1.38399 * 105.36007 * 179.97438 * 6 5 2 8 8 C 1.47164 * 126.88692 * 180.02562 * 7 6 5 9 9 O 1.21630 * 119.99690 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46507 * 120.00354 * 180.02562 * 10 8 7 12 12 H 1.09006 * 109.23982 * 324.65325 * 11 10 8 13 13 C 1.54842 * 109.35899 * 204.99812 * 11 10 8 14 14 C 1.50127 * 110.81178 * 200.92182 * 13 11 10 15 15 C 1.52524 * 105.41056 * 97.68840 * 14 13 11 16 16 C 1.46239 * 114.27600 * 270.58974 * 15 14 13 17 17 N 1.50172 * 107.53207 * 58.40879 * 16 15 14 18 18 C 1.36931 * 120.53516 * 109.56848 * 17 16 15 19 19 H 1.08004 * 119.99977 * 172.84823 * 18 17 16 20 20 C 1.38819 * 120.00300 * 352.84705 * 18 17 16 21 21 N 1.31616 * 119.99532 * 319.30052 * 20 18 17 22 22 Si 1.86802 * 120.00013 * 139.29464 * 20 18 17 23 23 H 1.48494 * 109.46784 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47014 * 60.00199 * 22 20 18 25 25 H 1.48496 * 109.47313 * 300.00228 * 22 20 18 26 26 C 1.43432 * 118.92783 * 289.84141 * 17 16 15 27 27 N 1.36608 * 106.23237 * 0.26240 * 7 6 5 28 28 H 0.96996 * 125.18674 * 179.73390 * 27 7 6 29 29 N 1.28442 * 109.61493 * 359.54966 * 27 7 6 30 30 H 1.09005 * 109.46973 * 299.99959 * 1 2 3 31 31 H 1.08998 * 109.47223 * 60.00236 * 1 2 3 32 32 H 1.09003 * 109.47484 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47672 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46980 * 299.99730 * 3 2 1 35 35 H 1.08998 * 109.47315 * 59.99464 * 3 2 1 36 36 H 1.08997 * 109.47034 * 300.00401 * 4 2 1 37 37 H 1.08998 * 109.46800 * 59.99933 * 4 2 1 38 38 H 1.09000 * 109.47613 * 180.02562 * 4 2 1 39 39 H 1.07998 * 127.31715 * 359.97438 * 6 5 2 40 40 H 0.97006 * 120.00326 * 359.97438 * 10 8 7 41 41 H 1.09003 * 109.20752 * 80.58505 * 13 11 10 42 42 H 1.08999 * 109.20807 * 321.27058 * 13 11 10 43 43 H 1.08992 * 110.25071 * 338.71453 * 14 13 11 44 44 H 1.08998 * 110.36908 * 216.71606 * 14 13 11 45 45 H 1.08999 * 108.52632 * 149.35177 * 15 14 13 46 46 H 1.08994 * 108.40503 * 31.74138 * 15 14 13 47 47 H 1.09003 * 109.84536 * 298.90100 * 16 15 14 48 48 H 1.09005 * 109.90325 * 177.94904 * 16 15 14 49 49 H 0.97000 * 120.00306 * 353.65432 * 21 20 18 50 50 H 1.08998 * 108.16066 * 213.03328 * 26 17 16 51 51 H 1.09004 * 108.15966 * 329.60352 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 6 2.0309 -2.0911 1.4412 7 6 2.5823 -2.2709 2.6978 8 6 2.8047 -3.5503 3.3900 9 8 2.4909 -4.5952 2.8524 10 7 3.3551 -3.5642 4.6201 11 6 3.5771 -4.8380 5.3091 12 1 2.7667 -5.5247 5.0643 13 6 3.6012 -4.5969 6.8385 14 6 4.3078 -5.7179 7.5441 15 6 5.7304 -5.2187 7.7749 16 6 6.6570 -5.5177 6.6838 17 7 6.1051 -4.8892 5.4366 18 6 6.7196 -3.8021 4.8748 19 1 6.3862 -3.4278 3.9181 20 6 7.7711 -3.1810 5.5349 21 7 7.7181 -3.0058 6.8383 22 14 9.2613 -2.5942 4.5733 23 1 10.2361 -1.9700 5.5035 24 1 8.8347 -1.5964 3.5596 25 1 9.8978 -3.7503 3.8926 26 6 4.9205 -5.4423 4.8466 27 7 2.8739 -1.0222 3.1690 28 1 3.2696 -0.8293 4.0333 29 7 2.5477 -0.1431 2.2912 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 -1.7489 -1.2491 37 1 1.6766 -0.2075 -2.1391 38 1 3.1300 -0.7217 -1.2490 39 1 1.6751 -2.8559 0.7667 40 1 3.6051 -2.7308 5.0491 41 1 2.5776 -4.5299 7.2071 42 1 4.1183 -3.6601 7.0457 43 1 4.3180 -6.6104 6.9185 44 1 3.8236 -5.9313 8.4970 45 1 6.1131 -5.6736 8.6885 46 1 5.6975 -4.1383 7.9149 47 1 6.7360 -6.5967 6.5506 48 1 7.6389 -5.0995 6.9056 49 1 6.9082 -3.2258 7.3247 50 1 4.9893 -5.3180 3.7659 51 1 4.9021 -6.5112 5.0597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034286674.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:46 Heat of formation + Delta-G solvation = 34.708498 kcal Electronic energy + Delta-G solvation = -30284.133712 eV Core-core repulsion = 26412.736808 eV Total energy + Delta-G solvation = -3871.396904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.67182 -40.94845 -39.49510 -37.85411 -36.21154 -34.99519 -33.14501 -32.33996 -32.07359 -31.06754 -28.20263 -28.06462 -27.84899 -26.05035 -24.95314 -24.12550 -23.48903 -22.13822 -21.60344 -20.98802 -19.98350 -19.38683 -19.03779 -17.36008 -17.03775 -16.94019 -16.59838 -16.30815 -15.95696 -15.86581 -15.59207 -15.11593 -15.10357 -14.84272 -14.65875 -14.44995 -14.34853 -13.97865 -13.82416 -13.49970 -13.08882 -12.96805 -12.79928 -12.62291 -12.51348 -12.50149 -12.31364 -12.21299 -12.02463 -11.97747 -11.89554 -11.79179 -11.57529 -11.48494 -11.31057 -11.21554 -11.16941 -10.50576 -10.26179 -10.17426 -10.02592 -8.89456 -8.29917 -5.10246 0.14552 1.49568 1.55023 1.61122 1.73770 1.79793 1.98818 2.15443 2.63410 3.10633 3.35289 3.43177 3.59041 3.77321 3.80228 3.98147 4.12339 4.17074 4.21641 4.33274 4.36353 4.40736 4.43215 4.47541 4.65356 4.65577 4.72280 4.84417 4.85469 4.90489 4.94940 5.04876 5.06786 5.07663 5.09202 5.12221 5.14741 5.25436 5.26682 5.37124 5.46612 5.47330 5.47635 5.48492 5.51446 5.61255 5.87577 5.91431 6.37231 6.47751 6.90258 7.01456 7.07274 7.84304 8.29600 9.02956 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.003530 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.723222 B = 7930.841023 C = 9312.264570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.015 3.985 3 C -0.132 4.132 4 C -0.138 4.138 5 C 0.036 3.964 6 C -0.158 4.158 7 C -0.043 4.043 8 C 0.588 3.412 9 O -0.564 6.564 10 N -0.695 5.695 11 C 0.122 3.878 12 H 0.086 0.914 13 C -0.103 4.103 14 C -0.102 4.102 15 C -0.128 4.128 16 C 0.131 3.869 17 N -0.597 5.597 18 C -0.351 4.351 19 H 0.041 0.959 20 C -0.050 4.050 21 N -0.922 5.922 22 Si 1.073 2.927 23 H -0.292 1.292 24 H -0.289 1.289 25 H -0.294 1.294 26 C 0.156 3.844 27 N -0.372 5.372 28 H 0.451 0.549 29 N -0.277 5.277 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.168 0.832 40 H 0.399 0.601 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.056 0.944 46 H 0.047 0.953 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.273 0.727 50 H 0.010 0.990 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 3.503 -6.869 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 C -0.189 4.189 4 C -0.196 4.196 5 C -0.122 4.122 6 C -0.188 4.188 7 C -0.172 4.172 8 C 0.373 3.627 9 O -0.443 6.443 10 N -0.343 5.343 11 C 0.014 3.986 12 H 0.104 0.896 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.167 4.167 16 C 0.008 3.992 17 N -0.320 5.320 18 C -0.479 4.479 19 H 0.059 0.941 20 C -0.249 4.249 21 N -0.565 5.565 22 Si 0.902 3.098 23 H -0.218 1.218 24 H -0.216 1.216 25 H -0.221 1.221 26 C 0.026 3.974 27 N -0.088 5.088 28 H 0.298 0.702 29 N -0.110 5.110 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.185 0.815 40 H 0.234 0.766 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.029 0.971 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.959 4.428 -6.628 15.215 hybrid contribution -0.848 -0.885 0.335 1.271 sum -13.807 3.543 -6.294 15.582 Atomic orbital electron populations 1.21845 0.92013 1.02521 1.02711 1.19080 0.96359 0.94814 0.88437 1.21751 1.00518 0.94136 1.02544 1.21890 1.00718 1.00776 0.96219 1.22402 1.02277 0.91372 0.96146 1.22144 1.04257 0.97209 0.95152 1.21737 1.10548 0.86537 0.98397 1.17142 0.77458 0.86827 0.81233 1.90767 1.54083 1.32916 1.66512 1.45879 1.60873 1.10853 1.16693 1.22702 0.98799 0.84577 0.92498 0.89596 1.21605 1.00852 0.99430 0.92227 1.20933 0.94585 0.97720 1.00758 1.20930 0.96515 1.00733 0.98500 1.20554 0.97741 0.95098 0.85833 1.44375 1.25483 1.32566 1.29540 1.19786 1.16596 1.09987 1.01553 0.94081 1.26090 1.03183 0.98796 0.96874 1.70909 1.32779 1.43145 1.09686 0.83404 0.76061 0.75689 0.74683 1.21821 1.21589 1.22118 1.20614 0.85887 0.95879 0.95001 1.43653 1.46010 1.02390 1.16779 0.70222 1.73062 1.17008 1.20273 1.00648 0.93255 0.89684 0.92277 0.93825 0.90139 0.92842 0.92000 0.89595 0.93627 0.81479 0.76632 0.90706 0.93023 0.91265 0.89409 0.92574 0.93495 0.94404 0.92114 0.91457 0.97130 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 8.46 71.98 0.61 -1.48 16 2 C 0.01 0.29 0.96 -52.93 -0.05 0.24 16 3 C -0.13 -2.43 8.04 71.98 0.58 -1.85 16 4 C -0.14 -2.35 8.20 71.98 0.59 -1.76 16 5 C 0.04 0.95 5.65 43.05 0.24 1.19 16 6 C -0.16 -4.56 10.12 22.66 0.23 -4.33 16 7 C -0.04 -1.36 7.16 40.78 0.29 -1.07 16 8 C 0.59 20.74 7.62 86.59 0.66 21.40 16 9 O -0.56 -22.97 16.58 -4.13 -0.07 -23.04 16 10 N -0.69 -23.08 5.08 -440.81 -2.24 -25.31 16 11 C 0.12 4.09 2.91 46.09 0.13 4.23 16 12 H 0.09 2.83 7.57 -2.38 -0.02 2.81 16 13 C -0.10 -3.07 5.23 30.30 0.16 -2.91 16 14 C -0.10 -2.92 5.76 29.51 0.17 -2.75 16 15 C -0.13 -4.58 4.96 28.35 0.14 -4.44 16 16 C 0.13 5.62 5.22 83.58 0.44 6.05 16 17 N -0.60 -27.39 2.62 -708.84 -1.86 -29.25 16 18 C -0.35 -18.33 9.46 84.04 0.80 -17.53 16 19 H 0.04 2.29 8.05 -2.91 -0.02 2.26 16 20 C -0.05 -2.65 4.53 84.86 0.38 -2.26 16 21 N -0.92 -50.76 11.99 21.65 0.26 -50.50 16 22 Si 1.07 50.04 30.06 68.60 2.06 52.10 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 C 0.16 6.30 4.75 87.42 0.41 6.71 16 27 N -0.37 -10.45 6.85 -47.99 -0.33 -10.78 16 28 H 0.45 10.93 8.22 -220.01 -1.81 9.12 16 29 N -0.28 -7.89 11.48 -47.49 -0.54 -8.44 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 36 H 0.06 1.03 7.60 -2.39 -0.02 1.02 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.17 4.44 7.79 -2.91 -0.02 4.42 16 40 H 0.40 12.44 7.63 -92.70 -0.71 11.73 16 41 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.78 6.58 -2.39 -0.02 1.76 16 43 H 0.07 1.96 6.28 -2.39 -0.02 1.95 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.94 4.65 -2.39 -0.01 1.92 16 47 H 0.04 1.49 8.13 -2.39 -0.02 1.47 16 48 H 0.06 3.03 5.61 -2.38 -0.01 3.02 16 49 H 0.27 14.52 4.95 -92.71 -0.46 14.06 16 50 H 0.01 0.48 7.81 -2.39 -0.02 0.47 16 51 H 0.05 1.98 6.89 -2.39 -0.02 1.96 16 Total: -1.00 -64.67 392.24 1.81 -62.86 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: -1.26 Total: 32.92 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.78 Total: -0.57 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -4.71 Total: -124.28 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.07 Total: -23.04 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.06 Total: 52.10 kcal Total: -64.67 1.81 -62.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034286674.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.567 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds