Wall clock time and date at job start Tue Mar 31 2020 20:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47709 * 2 1 4 4 C 1.53003 * 109.47361 * 239.99443 * 2 1 3 5 5 C 1.50705 * 109.46973 * 120.00057 * 2 1 3 6 6 C 1.39675 * 126.06784 * 74.99560 * 5 2 1 7 7 C 1.38407 * 105.35834 * 179.97438 * 6 5 2 8 8 C 1.47164 * 126.88410 * 180.26260 * 7 6 5 9 9 O 1.21636 * 120.00033 * 359.71207 * 8 7 6 10 10 N 1.34769 * 119.99918 * 179.71263 * 8 7 6 11 11 C 1.46509 * 119.99781 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.32509 * 34.99768 * 11 10 8 13 13 C 1.47097 * 109.32837 * 154.64936 * 11 10 8 14 14 C 1.52561 * 114.32828 * 183.05914 * 13 11 10 15 15 C 1.50882 * 109.35800 * 274.98813 * 14 13 11 16 16 C 1.53951 * 110.09802 * 91.88586 * 15 14 13 17 17 N 1.47598 * 112.13784 * 319.43957 * 16 15 14 18 18 C 1.36937 * 118.64131 * 137.86775 * 17 16 15 19 19 H 1.08006 * 119.99899 * 206.49186 * 18 17 16 20 20 C 1.38816 * 120.00234 * 26.50114 * 18 17 16 21 21 N 1.31617 * 120.00051 * 15.68109 * 20 18 17 22 22 Si 1.86802 * 119.99957 * 195.68752 * 20 18 17 23 23 H 1.48493 * 109.47148 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47187 * 119.99736 * 22 20 18 25 25 H 1.48504 * 109.46777 * 239.99436 * 22 20 18 26 26 C 1.44661 * 122.54469 * 317.85227 * 17 16 15 27 27 N 1.36594 * 106.22949 * 0.02562 * 7 6 5 28 28 H 0.97001 * 125.18612 * 180.02562 * 27 7 6 29 29 N 1.28444 * 109.62303 * 0.02562 * 27 7 6 30 30 H 1.09002 * 109.47533 * 300.00432 * 1 2 3 31 31 H 1.09008 * 109.47052 * 59.99970 * 1 2 3 32 32 H 1.08993 * 109.47515 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47367 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46929 * 300.00231 * 3 2 1 35 35 H 1.09002 * 109.47006 * 60.00015 * 3 2 1 36 36 H 1.08993 * 109.47256 * 300.00710 * 4 2 1 37 37 H 1.09008 * 109.46558 * 60.00285 * 4 2 1 38 38 H 1.08991 * 109.47415 * 180.02562 * 4 2 1 39 39 H 1.08001 * 127.32240 * 0.02562 * 6 5 2 40 40 H 0.96991 * 120.00193 * 359.97438 * 10 8 7 41 41 H 1.09000 * 108.51132 * 304.31708 * 13 11 10 42 42 H 1.09006 * 108.50934 * 61.96155 * 13 11 10 43 43 H 1.08999 * 109.48848 * 34.94544 * 14 13 11 44 44 H 1.08998 * 109.49098 * 155.01936 * 14 13 11 45 45 H 1.08995 * 109.37154 * 212.08401 * 15 14 13 46 46 H 1.09005 * 109.36473 * 331.82396 * 15 14 13 47 47 H 1.08997 * 108.94239 * 80.12228 * 16 15 14 48 48 H 1.08996 * 108.94754 * 198.75296 * 16 15 14 49 49 H 0.96993 * 120.00199 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.61994 * 330.84246 * 26 17 16 51 51 H 1.09000 * 109.32631 * 210.89942 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.0308 -2.0912 1.4410 7 6 2.5823 -2.2711 2.6977 8 6 2.8090 -3.5509 3.3879 9 8 2.4949 -4.5958 2.8503 10 7 3.3647 -3.5651 4.6156 11 6 3.5899 -4.8392 5.3029 12 1 3.8553 -5.6020 4.5709 13 6 4.6909 -4.6849 6.2661 14 6 5.0716 -5.9690 6.9966 15 6 4.1727 -6.1480 8.1951 16 6 2.9430 -6.9917 7.8128 17 7 2.4141 -6.6329 6.4824 18 6 2.0228 -7.6380 5.6388 19 1 2.0431 -7.4845 4.5699 20 6 1.5999 -8.8543 6.1573 21 7 1.2789 -8.9511 7.4300 22 14 1.4865 -10.3535 5.0487 23 1 1.8993 -9.9830 3.6713 24 1 2.3824 -11.4195 5.5646 25 1 0.0869 -10.8498 5.0290 26 6 2.2934 -5.2620 6.0368 27 7 2.8789 -1.0229 3.1666 28 1 3.2795 -0.8303 4.0287 29 7 2.5464 -0.1432 2.2917 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4423 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1299 -0.7218 -1.2490 39 1 1.6756 -2.8561 0.7663 40 1 3.6155 -2.7320 5.0441 41 1 5.5677 -4.3167 5.7334 42 1 4.4001 -3.9407 7.0077 43 1 4.9541 -6.8185 6.3238 44 1 6.1088 -5.9062 7.3259 45 1 4.7244 -6.6519 8.9887 46 1 3.8428 -5.1710 8.5485 47 1 3.2236 -8.0449 7.8100 48 1 2.1624 -6.8370 8.5576 49 1 0.9837 -9.8010 7.7925 50 1 2.1337 -4.6105 6.8960 51 1 1.4467 -5.1773 5.3555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034286675.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:55 Heat of formation + Delta-G solvation = 43.360303 kcal Electronic energy + Delta-G solvation = -29600.436495 eV Core-core repulsion = 25729.414761 eV Total energy + Delta-G solvation = -3871.021734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.70351 -39.58677 -37.66781 -37.10568 -34.69537 -33.31017 -31.39999 -31.12858 -30.80078 -29.71574 -27.46379 -27.42683 -26.06245 -24.56206 -23.61449 -23.01284 -22.30609 -20.64763 -20.30473 -19.25216 -18.85902 -18.52910 -16.62112 -16.12818 -15.87977 -15.81408 -15.15335 -15.03561 -14.59656 -14.32219 -14.18620 -13.92949 -13.78837 -13.60206 -13.47594 -13.20139 -12.69360 -12.56861 -12.48300 -12.35608 -12.16350 -11.84148 -11.62116 -11.51325 -11.28941 -11.20529 -11.07409 -10.97363 -10.81897 -10.65367 -10.57280 -10.20541 -10.13158 -9.86587 -9.74806 -9.66149 -9.60973 -9.28346 -9.19471 -8.91934 -8.33840 -6.65487 -5.75067 -3.18805 1.24540 2.44058 2.65604 3.14673 3.35304 3.41380 3.49543 3.54824 4.20556 4.52623 4.56288 4.70658 4.80192 4.98232 5.13499 5.17616 5.29418 5.38432 5.41499 5.44380 5.47389 5.50423 5.58084 5.61395 5.68758 5.71323 5.72355 5.87372 5.92950 5.95931 5.97850 6.06909 6.12158 6.15229 6.23154 6.33152 6.37150 6.54709 6.56375 6.58518 6.66334 6.78067 6.82152 6.88677 7.04187 7.43267 7.57874 7.71486 7.87277 7.92390 8.29529 8.51021 9.27689 9.92306 10.36176 11.32684 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.002756 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.083930 B =10158.465864 C =11368.300699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.017 3.983 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.038 3.962 6 C -0.152 4.152 7 C -0.027 4.027 8 C 0.582 3.418 9 O -0.506 6.506 10 N -0.719 5.719 11 C 0.114 3.886 12 H 0.092 0.908 13 C -0.112 4.112 14 C -0.100 4.100 15 C -0.144 4.144 16 C 0.175 3.825 17 N -0.583 5.583 18 C -0.256 4.256 19 H 0.071 0.929 20 C 0.004 3.996 21 N -0.906 5.906 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.157 3.843 27 N -0.382 5.382 28 H 0.442 0.558 29 N -0.270 5.270 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.385 0.615 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.044 0.956 47 H 0.076 0.924 48 H 0.025 0.975 49 H 0.252 0.748 50 H 0.032 0.968 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 19.624 -9.013 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 C -0.192 4.192 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.181 4.181 7 C -0.156 4.156 8 C 0.365 3.635 9 O -0.379 6.379 10 N -0.370 5.370 11 C 0.008 3.992 12 H 0.110 0.890 13 C -0.150 4.150 14 C -0.139 4.139 15 C -0.183 4.183 16 C 0.050 3.950 17 N -0.304 5.304 18 C -0.385 4.385 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.551 5.551 22 Si 0.729 3.271 23 H -0.200 1.200 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.027 3.973 27 N -0.098 5.098 28 H 0.287 0.713 29 N -0.103 5.103 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.180 0.820 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.043 0.957 49 H 0.062 0.938 50 H 0.050 0.950 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.024 19.662 -8.823 22.129 hybrid contribution 0.122 -1.062 0.052 1.070 sum 5.146 18.600 -8.771 21.199 Atomic orbital electron populations 1.21878 0.93288 1.02513 1.01981 1.18898 0.95433 0.94719 0.89402 1.21764 1.01209 0.94367 1.01822 1.21888 1.01350 1.00653 0.95880 1.21880 1.03079 0.91654 0.95421 1.21997 1.04107 0.96450 0.95526 1.21978 1.09265 0.86597 0.97743 1.16976 0.78632 0.86581 0.81268 1.90918 1.49786 1.31444 1.65726 1.46099 1.63283 1.10401 1.17222 1.21376 0.99221 0.83503 0.95063 0.89001 1.20587 0.97227 0.99150 0.98073 1.20825 0.97403 0.97651 0.97980 1.22084 0.98880 1.00427 0.96866 1.21066 0.90449 0.97886 0.85556 1.43609 1.71619 0.99964 1.15179 1.19358 1.37465 0.92243 0.89466 0.91161 1.25022 0.98844 0.99334 0.96169 1.70084 1.47828 1.24463 1.12698 0.86252 0.77260 0.83112 0.80446 1.20045 1.21644 1.21760 1.20923 0.93466 0.87129 0.95743 1.43583 1.46572 1.03015 1.16614 0.71328 1.73034 1.17083 1.19931 1.00250 0.92488 0.91950 0.92052 0.92563 0.92498 0.92063 0.91937 0.91919 0.92418 0.82007 0.78226 0.93389 0.92832 0.90356 0.93315 0.92841 0.93733 0.90573 0.95714 0.93807 0.95015 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.46 37.15 0.31 -0.82 16 2 C 0.02 0.15 0.96 -155.66 -0.15 0.00 16 3 C -0.13 -1.08 8.04 37.15 0.30 -0.79 16 4 C -0.14 -1.10 8.20 37.16 0.30 -0.80 16 5 C 0.04 0.44 5.65 -82.47 -0.47 -0.03 16 6 C -0.15 -1.96 10.12 -38.98 -0.39 -2.36 16 7 C -0.03 -0.36 7.16 -82.06 -0.59 -0.95 16 8 C 0.58 9.24 7.76 -12.64 -0.10 9.14 16 9 O -0.51 -10.44 16.58 5.25 0.09 -10.35 16 10 N -0.72 -9.90 5.05 -56.78 -0.29 -10.19 16 11 C 0.11 1.97 2.34 -69.78 -0.16 1.80 16 12 H 0.09 1.91 7.57 -51.93 -0.39 1.52 16 13 C -0.11 -1.64 4.55 -29.79 -0.14 -1.78 16 14 C -0.10 -1.65 5.51 -28.02 -0.15 -1.80 16 15 C -0.14 -2.55 5.70 -27.30 -0.16 -2.71 16 16 C 0.18 4.06 4.66 -2.94 -0.01 4.05 16 17 N -0.58 -14.24 2.27 -172.03 -0.39 -14.63 16 18 C -0.26 -7.07 9.45 -15.06 -0.14 -7.21 16 19 H 0.07 2.02 7.88 -52.48 -0.41 1.60 16 20 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 21 N -0.91 -26.25 11.01 55.49 0.61 -25.63 16 22 Si 0.90 22.24 29.58 -169.99 -5.03 17.21 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 C 0.16 3.27 5.24 -4.04 -0.02 3.25 16 27 N -0.38 -4.00 6.85 33.48 0.23 -3.77 16 28 H 0.44 3.12 8.22 -190.45 -1.57 1.55 16 29 N -0.27 -3.12 11.48 33.64 0.39 -2.74 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.06 0.50 7.60 -51.93 -0.39 0.11 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.16 2.03 7.79 -52.49 -0.41 1.62 16 40 H 0.39 3.77 7.76 -40.82 -0.32 3.46 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.71 7.34 -51.93 -0.38 0.33 16 43 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 47 H 0.08 1.98 6.33 -51.93 -0.33 1.65 16 48 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 49 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 50 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 51 H 0.05 1.14 7.97 -51.93 -0.41 0.73 16 LS Contribution 399.96 15.07 6.03 6.03 Total: -1.00 -32.55 399.96 -10.02 -42.57 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -10.00 Total: 2.45 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.65 Total: -0.94 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.55 Total: -56.96 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.55 -10.02 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034286675.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.927 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds