Wall clock time and date at job start Tue Mar 31 2020 20:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47709 * 2 1 4 4 C 1.53003 * 109.47361 * 239.99443 * 2 1 3 5 5 C 1.50705 * 109.46973 * 120.00057 * 2 1 3 6 6 C 1.39675 * 126.06784 * 74.99560 * 5 2 1 7 7 C 1.38407 * 105.35834 * 179.97438 * 6 5 2 8 8 C 1.47164 * 126.88410 * 180.26260 * 7 6 5 9 9 O 1.21636 * 120.00033 * 359.71207 * 8 7 6 10 10 N 1.34769 * 119.99918 * 179.71263 * 8 7 6 11 11 C 1.46509 * 119.99781 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.32509 * 34.99768 * 11 10 8 13 13 C 1.47097 * 109.32837 * 154.64936 * 11 10 8 14 14 C 1.52561 * 114.32828 * 183.05914 * 13 11 10 15 15 C 1.50882 * 109.35800 * 274.98813 * 14 13 11 16 16 C 1.53951 * 110.09802 * 91.88586 * 15 14 13 17 17 N 1.47598 * 112.13784 * 319.43957 * 16 15 14 18 18 C 1.36937 * 118.64131 * 137.86775 * 17 16 15 19 19 H 1.08006 * 119.99899 * 206.49186 * 18 17 16 20 20 C 1.38816 * 120.00234 * 26.50114 * 18 17 16 21 21 N 1.31617 * 120.00051 * 15.68109 * 20 18 17 22 22 Si 1.86802 * 119.99957 * 195.68752 * 20 18 17 23 23 H 1.48493 * 109.47148 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47187 * 119.99736 * 22 20 18 25 25 H 1.48504 * 109.46777 * 239.99436 * 22 20 18 26 26 C 1.44661 * 122.54469 * 317.85227 * 17 16 15 27 27 N 1.36594 * 106.22949 * 0.02562 * 7 6 5 28 28 H 0.97001 * 125.18612 * 180.02562 * 27 7 6 29 29 N 1.28444 * 109.62303 * 0.02562 * 27 7 6 30 30 H 1.09002 * 109.47533 * 300.00432 * 1 2 3 31 31 H 1.09008 * 109.47052 * 59.99970 * 1 2 3 32 32 H 1.08993 * 109.47515 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47367 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46929 * 300.00231 * 3 2 1 35 35 H 1.09002 * 109.47006 * 60.00015 * 3 2 1 36 36 H 1.08993 * 109.47256 * 300.00710 * 4 2 1 37 37 H 1.09008 * 109.46558 * 60.00285 * 4 2 1 38 38 H 1.08991 * 109.47415 * 180.02562 * 4 2 1 39 39 H 1.08001 * 127.32240 * 0.02562 * 6 5 2 40 40 H 0.96991 * 120.00193 * 359.97438 * 10 8 7 41 41 H 1.09000 * 108.51132 * 304.31708 * 13 11 10 42 42 H 1.09006 * 108.50934 * 61.96155 * 13 11 10 43 43 H 1.08999 * 109.48848 * 34.94544 * 14 13 11 44 44 H 1.08998 * 109.49098 * 155.01936 * 14 13 11 45 45 H 1.08995 * 109.37154 * 212.08401 * 15 14 13 46 46 H 1.09005 * 109.36473 * 331.82396 * 15 14 13 47 47 H 1.08997 * 108.94239 * 80.12228 * 16 15 14 48 48 H 1.08996 * 108.94754 * 198.75296 * 16 15 14 49 49 H 0.96993 * 120.00199 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.61994 * 330.84246 * 26 17 16 51 51 H 1.09000 * 109.32631 * 210.89942 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.0308 -2.0912 1.4410 7 6 2.5823 -2.2711 2.6977 8 6 2.8090 -3.5509 3.3879 9 8 2.4949 -4.5958 2.8503 10 7 3.3647 -3.5651 4.6156 11 6 3.5899 -4.8392 5.3029 12 1 3.8553 -5.6020 4.5709 13 6 4.6909 -4.6849 6.2661 14 6 5.0716 -5.9690 6.9966 15 6 4.1727 -6.1480 8.1951 16 6 2.9430 -6.9917 7.8128 17 7 2.4141 -6.6329 6.4824 18 6 2.0228 -7.6380 5.6388 19 1 2.0431 -7.4845 4.5699 20 6 1.5999 -8.8543 6.1573 21 7 1.2789 -8.9511 7.4300 22 14 1.4865 -10.3535 5.0487 23 1 1.8993 -9.9830 3.6713 24 1 2.3824 -11.4195 5.5646 25 1 0.0869 -10.8498 5.0290 26 6 2.2934 -5.2620 6.0368 27 7 2.8789 -1.0229 3.1666 28 1 3.2795 -0.8303 4.0287 29 7 2.5464 -0.1432 2.2917 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4423 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1299 -0.7218 -1.2490 39 1 1.6756 -2.8561 0.7663 40 1 3.6155 -2.7320 5.0441 41 1 5.5677 -4.3167 5.7334 42 1 4.4001 -3.9407 7.0077 43 1 4.9541 -6.8185 6.3238 44 1 6.1088 -5.9062 7.3259 45 1 4.7244 -6.6519 8.9887 46 1 3.8428 -5.1710 8.5485 47 1 3.2236 -8.0449 7.8100 48 1 2.1624 -6.8370 8.5576 49 1 0.9837 -9.8010 7.7925 50 1 2.1337 -4.6105 6.8960 51 1 1.4467 -5.1773 5.3555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034286675.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:53 Heat of formation + Delta-G solvation = 22.347054 kcal Electronic energy + Delta-G solvation = -29601.347698 eV Core-core repulsion = 25729.414761 eV Total energy + Delta-G solvation = -3871.932936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.66271 -40.96520 -39.20030 -37.83744 -36.33177 -34.91124 -32.96317 -32.44476 -32.07876 -30.97408 -28.15629 -28.06179 -27.89201 -26.10073 -25.20241 -24.12920 -23.46734 -21.79712 -21.66718 -20.94127 -19.98098 -19.38612 -18.61740 -17.57843 -16.97782 -16.86545 -16.63571 -16.36773 -15.99339 -15.71356 -15.33269 -15.20857 -14.86263 -14.78736 -14.63359 -14.49135 -14.23441 -14.11037 -13.85188 -13.14790 -13.08350 -13.02930 -12.94583 -12.86164 -12.50451 -12.48498 -12.42631 -12.28049 -12.04765 -12.00080 -11.87161 -11.69100 -11.52455 -11.45433 -11.40625 -11.20366 -11.16579 -10.58324 -10.36004 -10.14343 -10.10198 -8.66524 -7.89366 -5.35047 0.15183 1.40211 1.42708 1.49515 1.54347 1.73645 1.95857 2.13080 2.49774 3.23712 3.34247 3.59403 3.72678 3.82071 3.88441 4.07621 4.14059 4.18811 4.23992 4.34526 4.39433 4.47902 4.49333 4.67761 4.69275 4.73780 4.85222 4.87819 4.96680 4.97402 5.02099 5.07666 5.08656 5.09672 5.16323 5.18896 5.22080 5.27110 5.33949 5.35263 5.48067 5.48314 5.51400 5.59205 5.62401 5.70228 5.82544 5.96902 6.38498 6.43117 6.93231 7.08355 7.16851 7.92362 8.27455 9.15182 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.002756 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.083930 B =10158.465864 C =11368.300699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.130 4.130 4 C -0.138 4.138 5 C 0.037 3.963 6 C -0.163 4.163 7 C -0.038 4.038 8 C 0.585 3.415 9 O -0.562 6.562 10 N -0.701 5.701 11 C 0.135 3.865 12 H 0.051 0.949 13 C -0.110 4.110 14 C -0.098 4.098 15 C -0.131 4.131 16 C 0.183 3.817 17 N -0.596 5.596 18 C -0.260 4.260 19 H 0.050 0.950 20 C -0.043 4.043 21 N -0.931 5.931 22 Si 0.957 3.043 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.290 1.290 26 C 0.157 3.843 27 N -0.362 5.362 28 H 0.458 0.542 29 N -0.268 5.268 30 H 0.049 0.951 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.158 0.842 40 H 0.411 0.589 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.039 0.961 48 H -0.005 1.005 49 H 0.250 0.750 50 H 0.052 0.948 51 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 22.479 -9.121 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.187 4.187 4 C -0.196 4.196 5 C -0.121 4.121 6 C -0.193 4.193 7 C -0.167 4.167 8 C 0.370 3.630 9 O -0.439 6.439 10 N -0.352 5.352 11 C 0.028 3.972 12 H 0.069 0.931 13 C -0.148 4.148 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.059 3.941 17 N -0.318 5.318 18 C -0.391 4.391 19 H 0.068 0.932 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.209 1.209 25 H -0.217 1.217 26 C 0.029 3.971 27 N -0.080 5.080 28 H 0.306 0.694 29 N -0.101 5.101 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.175 0.825 40 H 0.248 0.752 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.013 0.987 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.620 22.599 -8.899 25.174 hybrid contribution -0.412 -1.869 0.057 1.914 sum 6.208 20.730 -8.842 23.376 Atomic orbital electron populations 1.21873 0.92711 1.02208 1.02687 1.19058 0.95875 0.95189 0.88640 1.21732 1.00832 0.93649 1.02497 1.21886 1.01035 1.00487 0.96211 1.22270 1.02615 0.91044 0.96195 1.22155 1.04158 0.97346 0.95606 1.21510 1.10830 0.86366 0.97989 1.17284 0.77523 0.86759 0.81426 1.90897 1.52152 1.33690 1.67158 1.45779 1.62433 1.10485 1.16532 1.20814 0.98027 0.83928 0.94420 0.93099 1.20539 0.97032 0.99079 0.98118 1.20806 0.99098 0.97070 0.96664 1.21943 0.96503 1.00453 0.98025 1.20880 0.91937 0.97215 0.84111 1.43738 1.72159 1.00728 1.15194 1.19380 1.36992 0.93598 0.89119 0.93250 1.25640 0.99258 1.01517 0.97442 1.70211 1.48922 1.24727 1.13860 0.85364 0.77081 0.80238 0.78775 1.20177 1.20919 1.21706 1.21013 0.94297 0.85902 0.95904 1.43576 1.45685 1.01702 1.17076 0.69401 1.73048 1.16860 1.19814 1.00399 0.93163 0.89866 0.92883 0.93073 0.90525 0.92713 0.92574 0.89911 0.92899 0.82482 0.75245 0.90408 0.89838 0.94188 0.89750 0.91093 0.91475 0.94196 0.98718 0.94081 0.92985 0.96731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.46 71.98 0.61 -1.43 16 2 C 0.01 0.23 0.96 -52.93 -0.05 0.18 16 3 C -0.13 -1.81 8.04 71.98 0.58 -1.23 16 4 C -0.14 -1.98 8.20 71.98 0.59 -1.39 16 5 C 0.04 0.80 5.65 43.05 0.24 1.04 16 6 C -0.16 -4.20 10.12 22.66 0.23 -3.97 16 7 C -0.04 -0.98 7.16 40.79 0.29 -0.68 16 8 C 0.58 18.68 7.76 86.59 0.67 19.35 16 9 O -0.56 -24.36 16.58 -4.14 -0.07 -24.43 16 10 N -0.70 -18.34 5.05 -451.80 -2.28 -20.62 16 11 C 0.14 4.57 2.34 43.79 0.10 4.67 16 12 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 13 C -0.11 -2.85 4.55 28.61 0.13 -2.72 16 14 C -0.10 -2.98 5.51 29.76 0.16 -2.82 16 15 C -0.13 -4.37 5.70 30.23 0.17 -4.20 16 16 C 0.18 8.69 4.66 86.49 0.40 9.09 16 17 N -0.60 -30.16 2.27 -698.19 -1.59 -31.75 16 18 C -0.26 -15.11 9.45 84.03 0.79 -14.31 16 19 H 0.05 3.02 7.88 -2.91 -0.02 3.00 16 20 C -0.04 -2.50 4.87 84.86 0.41 -2.09 16 21 N -0.93 -55.97 11.01 21.65 0.24 -55.73 16 22 Si 0.96 47.42 29.58 68.60 2.03 49.45 16 23 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 C 0.16 6.65 5.24 87.36 0.46 7.10 16 27 N -0.36 -6.85 6.85 -48.00 -0.33 -7.18 16 28 H 0.46 5.09 8.22 -220.00 -1.81 3.28 16 29 N -0.27 -5.68 11.48 -47.49 -0.54 -6.23 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.84 8.08 -2.39 -0.02 0.82 16 36 H 0.06 0.87 7.60 -2.39 -0.02 0.85 16 37 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.16 4.11 7.79 -2.91 -0.02 4.08 16 40 H 0.41 6.71 7.76 -92.72 -0.72 5.99 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.75 7.34 -2.38 -0.02 1.73 16 43 H 0.04 1.54 7.48 -2.39 -0.02 1.52 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.07 1.97 7.31 -2.38 -0.02 1.95 16 47 H 0.04 2.15 6.33 -2.39 -0.02 2.14 16 48 H -0.01 -0.28 8.03 -2.39 -0.02 -0.30 16 49 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 50 H 0.05 1.97 8.05 -2.39 -0.02 1.95 16 51 H 0.01 0.70 7.97 -2.39 -0.02 0.68 16 Total: -1.00 -76.00 399.96 1.66 -74.34 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -1.60 Total: 15.55 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 5.80 Total: 6.59 kcal Atomic # 7 Polarization: -117.00 SS G_CDS: -4.50 Total: -121.50 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.07 Total: -24.43 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -76.00 1.66 -74.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034286675.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.689 kcal (2) G-P(sol) polarization free energy of solvation -75.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds