Wall clock time and date at job start Tue Mar 31 2020 20:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46884 * 2 1 4 4 C 1.50700 * 109.47354 * 120.00048 * 2 1 3 5 5 N 1.30500 * 125.65162 * 300.17284 * 4 2 1 6 6 C 1.34127 * 109.25654 * 180.28970 * 5 4 2 7 7 C 1.34666 * 108.01962 * 359.73140 * 6 5 4 8 8 N 1.35046 * 125.64870 * 120.00336 * 4 2 1 9 9 C 1.46499 * 126.39768 * 359.97367 * 8 4 2 10 10 C 1.50698 * 109.47198 * 84.71724 * 9 8 4 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48504 * 109.46872 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47197 * 299.99684 * 24 22 20 27 27 H 1.48504 * 109.47341 * 60.00223 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46923 * 299.99760 * 1 2 3 31 31 H 1.08989 * 109.47202 * 60.00168 * 1 2 3 32 32 H 1.09001 * 109.46923 * 240.00240 * 2 1 3 33 33 H 1.09003 * 109.46946 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47173 * 299.99813 * 3 2 1 35 35 H 1.09001 * 109.47145 * 60.00375 * 3 2 1 36 36 H 1.07998 * 125.99094 * 179.72360 * 6 5 4 37 37 H 1.08005 * 126.59258 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46836 * 324.71142 * 9 8 4 39 39 H 1.09005 * 109.46773 * 204.71904 * 9 8 4 40 40 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 41 41 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 42 42 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 43 43 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 44 44 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 45 45 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 46 46 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 47 47 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 48 48 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 49 49 H 0.97001 * 119.99999 * 353.66198 * 23 22 20 50 50 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 51 51 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7835 -0.3639 2.4637 6 6 2.3971 -1.2185 3.2957 7 6 3.0461 -2.1326 2.5497 8 7 2.8121 -1.8130 1.2395 9 6 3.3182 -2.5294 0.0661 10 6 4.5863 -1.8727 -0.4152 11 8 5.0240 -0.9015 0.1645 12 7 5.2334 -2.3640 -1.4905 13 6 6.4665 -1.7260 -1.9580 14 1 6.3949 -0.6486 -1.8085 15 6 6.6585 -2.0233 -3.4655 16 6 8.0953 -1.8496 -3.8646 17 6 8.6929 -3.2528 -3.8485 18 6 9.2529 -3.6530 -2.5582 19 7 8.1510 -3.5695 -1.5415 20 6 7.6176 -4.7079 -0.9985 21 1 6.9089 -4.6382 -0.1865 22 6 7.9876 -5.9515 -1.4920 23 7 8.1262 -6.1304 -2.7886 24 14 8.2888 -7.3711 -0.3157 25 1 8.6686 -8.5815 -1.0877 26 1 9.3862 -7.0150 0.6191 27 1 7.0502 -7.6455 0.4564 28 6 7.6623 -2.2784 -1.1525 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.3746 -1.1801 4.3748 37 1 3.6379 -2.9589 2.9150 38 1 2.5708 -2.5015 -0.7269 39 1 3.5247 -3.5656 0.3343 40 1 4.8831 -3.1406 -1.9544 41 1 6.0397 -1.3403 -4.0474 42 1 6.3509 -3.0488 -3.6701 43 1 8.6116 -1.2114 -3.1476 44 1 8.1622 -1.4226 -4.8653 45 1 9.4823 -3.3016 -4.5987 46 1 7.9123 -3.9625 -4.1223 47 1 10.0636 -2.9790 -2.2815 48 1 9.6259 -4.6756 -2.6167 49 1 7.8818 -5.4222 -3.4047 50 1 7.3655 -2.3290 -0.1049 51 1 8.4832 -1.5658 -1.2333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034423464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:03 Heat of formation + Delta-G solvation = 51.159590 kcal Electronic energy + Delta-G solvation = -30619.450056 eV Core-core repulsion = 26748.766524 eV Total energy + Delta-G solvation = -3870.683531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.12561 -39.64025 -38.06007 -35.40587 -34.64531 -33.89281 -33.41143 -31.30347 -30.29497 -28.81224 -27.72444 -27.21976 -26.00790 -24.27830 -23.02504 -22.79288 -21.37983 -20.83520 -20.15818 -19.46200 -18.97615 -17.35118 -17.31706 -17.10402 -15.71678 -15.52742 -15.18252 -14.96978 -14.55566 -14.50388 -14.27950 -13.86200 -13.72185 -13.53490 -13.49090 -13.29695 -12.90423 -12.81696 -12.54428 -12.37062 -12.24722 -12.21335 -11.90932 -11.56831 -11.26438 -11.16905 -11.03998 -10.98178 -10.67721 -10.51164 -10.28082 -10.16047 -10.09585 -9.90586 -9.87218 -9.82802 -9.56003 -9.27851 -8.87111 -8.25759 -8.24146 -7.06624 -6.27312 -3.12638 2.05680 2.67717 2.70610 3.26189 3.41992 3.49087 3.51904 3.66779 4.32572 4.51506 4.59154 4.62600 4.78894 4.91474 5.03505 5.04816 5.05672 5.09697 5.20919 5.21559 5.30887 5.52741 5.55453 5.59303 5.65420 5.79149 5.79546 5.83437 5.87951 5.88290 5.90277 6.13214 6.15396 6.22908 6.24667 6.27335 6.39021 6.49027 6.57677 6.59196 6.75401 6.80425 6.85403 6.91414 7.14674 7.16342 7.19858 7.72920 7.88999 8.20133 8.38367 8.42581 8.97361 9.75179 10.20624 11.03006 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003586 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.235634 B = 7806.059114 C = 9126.852319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.225 3.775 5 N -0.489 5.489 6 C -0.032 4.032 7 C -0.047 4.047 8 N -0.437 5.437 9 C 0.081 3.919 10 C 0.494 3.506 11 O -0.532 6.532 12 N -0.698 5.698 13 C 0.116 3.884 14 H 0.075 0.925 15 C -0.111 4.111 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.129 3.871 19 N -0.587 5.587 20 C -0.355 4.355 21 H 0.061 0.939 22 C -0.014 4.014 23 N -0.900 5.900 24 Si 1.035 2.965 25 H -0.287 1.287 26 H -0.295 1.295 27 H -0.296 1.296 28 C 0.155 3.845 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.168 0.832 37 H 0.172 0.828 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.401 0.599 41 H 0.045 0.955 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.024 0.976 48 H 0.095 0.905 49 H 0.273 0.727 50 H 0.039 0.961 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.599 8.521 -0.096 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.038 4.038 5 N -0.208 5.208 6 C -0.179 4.179 7 C -0.179 4.179 8 N -0.119 5.119 9 C -0.046 4.046 10 C 0.277 3.723 11 O -0.409 6.409 12 N -0.348 5.348 13 C 0.008 3.992 14 H 0.093 0.907 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.174 4.174 18 C 0.005 3.995 19 N -0.308 5.308 20 C -0.482 4.482 21 H 0.079 0.921 22 C -0.216 4.216 23 N -0.541 5.541 24 Si 0.865 3.135 25 H -0.213 1.213 26 H -0.223 1.223 27 H -0.223 1.223 28 C 0.024 3.976 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.185 0.815 37 H 0.189 0.811 38 H 0.134 0.866 39 H 0.142 0.858 40 H 0.235 0.765 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.042 0.958 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.058 0.942 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.181 8.174 0.578 13.069 hybrid contribution -0.096 0.220 -0.464 0.522 sum -10.277 8.394 0.115 13.270 Atomic orbital electron populations 1.21787 0.93249 1.01991 1.02643 1.19495 0.96238 0.96085 0.90843 1.21748 1.01794 0.93884 1.02182 1.23068 0.96752 0.88415 0.95558 1.70136 1.24722 1.26961 0.98933 1.22168 1.01663 0.94687 0.99389 1.22672 1.07561 1.05088 0.82601 1.44828 1.38017 1.23089 1.05953 1.21721 0.96251 0.97923 0.88690 1.20454 0.85560 0.84869 0.81370 1.90746 1.67579 1.26765 1.55773 1.45937 1.26176 1.32749 1.29914 1.22824 0.85406 0.96461 0.94492 0.90706 1.21664 0.97177 1.01903 0.94151 1.20941 0.95701 0.98122 1.00085 1.21091 1.00962 0.95802 0.99579 1.20599 0.89592 1.02028 0.87291 1.44346 1.37193 1.01086 1.48168 1.19831 1.28250 0.85429 1.14736 0.92069 1.25388 1.00353 0.98063 0.97828 1.70882 1.46743 1.34578 1.01925 0.83975 0.76669 0.76793 0.76094 1.21308 1.22278 1.22284 1.20591 0.92722 0.87772 0.96528 0.92868 0.91319 0.91979 0.90708 0.92123 0.92207 0.91532 0.81518 0.81084 0.86631 0.85836 0.76515 0.93609 0.90936 0.91761 0.92546 0.94124 0.91031 0.95793 0.88725 0.91355 0.94229 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.62 9.17 37.16 0.34 -1.28 16 4 C 0.22 3.26 6.39 -155.41 -0.99 2.26 16 5 N -0.49 -7.73 11.25 -10.82 -0.12 -7.85 16 6 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 7 C -0.05 -0.66 11.58 -16.56 -0.19 -0.85 16 8 N -0.44 -6.15 2.24 -115.19 -0.26 -6.41 16 9 C 0.08 0.98 6.16 -5.20 -0.03 0.95 16 10 C 0.49 7.70 7.71 -10.99 -0.08 7.61 16 11 O -0.53 -10.36 16.08 5.56 0.09 -10.27 16 12 N -0.70 -10.69 5.08 -52.15 -0.26 -10.96 16 13 C 0.12 1.94 2.91 -66.22 -0.19 1.75 16 14 H 0.07 1.29 7.58 -51.93 -0.39 0.90 16 15 C -0.11 -1.72 5.23 -27.19 -0.14 -1.86 16 16 C -0.11 -1.72 5.76 -28.41 -0.16 -1.88 16 17 C -0.14 -2.48 4.96 -30.19 -0.15 -2.63 16 18 C 0.13 2.74 5.22 -5.21 -0.03 2.72 16 19 N -0.59 -13.13 2.62 -175.40 -0.46 -13.59 16 20 C -0.35 -8.86 9.46 -15.06 -0.14 -9.00 16 21 H 0.06 1.58 8.05 -52.48 -0.42 1.16 16 22 C -0.01 -0.35 4.53 -17.43 -0.08 -0.43 16 23 N -0.90 -24.03 11.99 55.49 0.67 -23.37 16 24 Si 1.03 23.61 30.05 -169.99 -5.11 18.51 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.15 3.09 4.74 -4.93 -0.02 3.07 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.48 8.14 -51.94 -0.42 0.06 16 32 H 0.07 0.81 6.85 -51.93 -0.36 0.45 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 38 H 0.12 1.05 7.30 -51.93 -0.38 0.67 16 39 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.40 5.68 8.44 -40.82 -0.34 5.33 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.26 6.58 -51.93 -0.34 0.92 16 43 H 0.06 1.01 6.28 -51.93 -0.33 0.69 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.47 4.65 -51.93 -0.24 1.23 16 47 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 48 H 0.09 2.31 5.61 -51.92 -0.29 2.02 16 49 H 0.27 7.06 4.95 -40.82 -0.20 6.85 16 50 H 0.04 0.89 7.80 -51.93 -0.41 0.48 16 51 H 0.04 0.73 6.89 -51.93 -0.36 0.37 16 LS Contribution 395.40 15.07 5.96 5.96 Total: -1.00 -31.14 395.40 -9.90 -41.04 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.35 Total: 8.54 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.05 Total: -1.61 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -0.44 Total: -62.17 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.11 Total: 18.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.14 -9.90 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034423464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.203 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds