Wall clock time and date at job start Tue Mar 31 2020 20:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46884 * 2 1 4 4 C 1.50700 * 109.47354 * 120.00048 * 2 1 3 5 5 N 1.30500 * 125.65162 * 300.17284 * 4 2 1 6 6 C 1.34127 * 109.25654 * 180.28970 * 5 4 2 7 7 C 1.34666 * 108.01962 * 359.73140 * 6 5 4 8 8 N 1.35046 * 125.64870 * 120.00336 * 4 2 1 9 9 C 1.46499 * 126.39768 * 359.97367 * 8 4 2 10 10 C 1.50698 * 109.47198 * 84.71724 * 9 8 4 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48504 * 109.46872 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47197 * 299.99684 * 24 22 20 27 27 H 1.48504 * 109.47341 * 60.00223 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.09003 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46923 * 299.99760 * 1 2 3 31 31 H 1.08989 * 109.47202 * 60.00168 * 1 2 3 32 32 H 1.09001 * 109.46923 * 240.00240 * 2 1 3 33 33 H 1.09003 * 109.46946 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47173 * 299.99813 * 3 2 1 35 35 H 1.09001 * 109.47145 * 60.00375 * 3 2 1 36 36 H 1.07998 * 125.99094 * 179.72360 * 6 5 4 37 37 H 1.08005 * 126.59258 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46836 * 324.71142 * 9 8 4 39 39 H 1.09005 * 109.46773 * 204.71904 * 9 8 4 40 40 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 41 41 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 42 42 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 43 43 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 44 44 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 45 45 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 46 46 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 47 47 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 48 48 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 49 49 H 0.97001 * 119.99999 * 353.66198 * 23 22 20 50 50 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 51 51 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7835 -0.3639 2.4637 6 6 2.3971 -1.2185 3.2957 7 6 3.0461 -2.1326 2.5497 8 7 2.8121 -1.8130 1.2395 9 6 3.3182 -2.5294 0.0661 10 6 4.5863 -1.8727 -0.4152 11 8 5.0240 -0.9015 0.1645 12 7 5.2334 -2.3640 -1.4905 13 6 6.4665 -1.7260 -1.9580 14 1 6.3949 -0.6486 -1.8085 15 6 6.6585 -2.0233 -3.4655 16 6 8.0953 -1.8496 -3.8646 17 6 8.6929 -3.2528 -3.8485 18 6 9.2529 -3.6530 -2.5582 19 7 8.1510 -3.5695 -1.5415 20 6 7.6176 -4.7079 -0.9985 21 1 6.9089 -4.6382 -0.1865 22 6 7.9876 -5.9515 -1.4920 23 7 8.1262 -6.1304 -2.7886 24 14 8.2888 -7.3711 -0.3157 25 1 8.6686 -8.5815 -1.0877 26 1 9.3862 -7.0150 0.6191 27 1 7.0502 -7.6455 0.4564 28 6 7.6623 -2.2784 -1.1525 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.3746 -1.1801 4.3748 37 1 3.6379 -2.9589 2.9150 38 1 2.5708 -2.5015 -0.7269 39 1 3.5247 -3.5656 0.3343 40 1 4.8831 -3.1406 -1.9544 41 1 6.0397 -1.3403 -4.0474 42 1 6.3509 -3.0488 -3.6701 43 1 8.6116 -1.2114 -3.1476 44 1 8.1622 -1.4226 -4.8653 45 1 9.4823 -3.3016 -4.5987 46 1 7.9123 -3.9625 -4.1223 47 1 10.0636 -2.9790 -2.2815 48 1 9.6259 -4.6756 -2.6167 49 1 7.8818 -5.4222 -3.4047 50 1 7.3655 -2.3290 -0.1049 51 1 8.4832 -1.5658 -1.2333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034423464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:02 Heat of formation + Delta-G solvation = 33.849197 kcal Electronic energy + Delta-G solvation = -30620.200691 eV Core-core repulsion = 26748.766524 eV Total energy + Delta-G solvation = -3871.434166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.18273 -40.98805 -39.54363 -36.29766 -36.15749 -35.01542 -34.92526 -33.02839 -31.79857 -29.86394 -28.88614 -28.05758 -27.66091 -25.71599 -24.64785 -23.82308 -22.60799 -22.15341 -21.48992 -20.92376 -20.04285 -19.02957 -18.52646 -18.28509 -17.12123 -16.75837 -16.47593 -16.34671 -15.90096 -15.74570 -15.54552 -15.27890 -15.24348 -14.76274 -14.57100 -14.35896 -14.30489 -13.99294 -13.82672 -13.78614 -13.55605 -13.31887 -13.01889 -12.78166 -12.54647 -12.44728 -12.42658 -12.17720 -12.14764 -11.94424 -11.91876 -11.76321 -11.56427 -11.38212 -11.28758 -11.18298 -10.97475 -10.48675 -10.36575 -10.02314 -9.30809 -8.87063 -8.26030 -5.06904 0.97444 1.48195 1.58698 1.66357 1.66799 1.84091 2.17460 2.32047 2.66942 3.14998 3.38554 3.44719 3.59040 3.67182 3.74147 3.81200 4.00139 4.01013 4.10271 4.18564 4.22607 4.32454 4.37530 4.42238 4.46229 4.56294 4.66787 4.70829 4.72023 4.78454 4.88000 4.91882 4.93498 5.03365 5.05601 5.11057 5.14694 5.25674 5.28615 5.31951 5.38379 5.40011 5.48109 5.57788 5.61454 5.81905 5.91559 6.15588 6.48807 6.52998 7.09880 7.12543 7.15979 7.86833 8.33215 9.06987 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.003586 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.235634 B = 7806.059114 C = 9126.852319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 C -0.132 4.132 4 C 0.216 3.784 5 N -0.519 5.519 6 C -0.048 4.048 7 C -0.059 4.059 8 N -0.443 5.443 9 C 0.085 3.915 10 C 0.495 3.505 11 O -0.574 6.574 12 N -0.694 5.694 13 C 0.126 3.874 14 H 0.075 0.925 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.127 4.127 18 C 0.131 3.869 19 N -0.597 5.597 20 C -0.350 4.350 21 H 0.048 0.952 22 C -0.051 4.051 23 N -0.924 5.924 24 Si 1.075 2.925 25 H -0.296 1.296 26 H -0.298 1.298 27 H -0.281 1.281 28 C 0.159 3.841 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.408 0.592 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.033 0.967 48 H 0.061 0.939 49 H 0.272 0.728 50 H 0.008 0.992 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 8.998 -1.372 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 C -0.190 4.190 4 C -0.046 4.046 5 N -0.238 5.238 6 C -0.195 4.195 7 C -0.191 4.191 8 N -0.125 5.125 9 C -0.041 4.041 10 C 0.280 3.720 11 O -0.453 6.453 12 N -0.344 5.344 13 C 0.018 3.982 14 H 0.093 0.907 15 C -0.139 4.139 16 C -0.141 4.141 17 C -0.166 4.166 18 C 0.007 3.993 19 N -0.320 5.320 20 C -0.478 4.478 21 H 0.066 0.934 22 C -0.251 4.251 23 N -0.568 5.568 24 Si 0.904 3.096 25 H -0.222 1.222 26 H -0.226 1.226 27 H -0.207 1.207 28 C 0.030 3.970 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.202 0.798 37 H 0.205 0.795 38 H 0.170 0.830 39 H 0.158 0.842 40 H 0.244 0.756 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.026 0.974 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.364 8.652 -0.700 14.300 hybrid contribution 0.335 0.136 -0.013 0.362 sum -11.029 8.788 -0.713 14.120 Atomic orbital electron populations 1.21732 0.91546 1.02423 1.03183 1.19687 0.97592 0.95591 0.90122 1.21688 0.99831 0.94447 1.03003 1.23649 0.96402 0.88469 0.96120 1.70121 1.25886 1.27879 0.99880 1.22598 1.01745 0.94694 1.00448 1.23047 1.07639 1.05570 0.82867 1.44991 1.37889 1.23240 1.06382 1.21885 0.95273 0.97842 0.89132 1.21024 0.86234 0.84167 0.80547 1.90733 1.68926 1.28753 1.56934 1.45882 1.25617 1.32855 1.30004 1.22521 0.84521 0.96177 0.95024 0.90678 1.21579 0.97763 1.01528 0.93071 1.20933 0.95199 0.96123 1.01875 1.20927 1.00637 0.97122 0.97941 1.20539 0.89675 1.00374 0.88695 1.44368 1.37620 1.01155 1.48832 1.19824 1.27710 0.86375 1.13932 0.93424 1.26131 1.00842 0.99818 0.98297 1.70911 1.48466 1.34979 1.02412 0.83374 0.76890 0.74656 0.74711 1.22210 1.22556 1.20737 1.20560 0.94231 0.86995 0.95253 0.92489 0.92634 0.89544 0.89417 0.94952 0.89491 0.92600 0.79784 0.79498 0.83002 0.84181 0.75634 0.90716 0.92675 0.91801 0.89532 0.92769 0.93188 0.94880 0.92036 0.91498 0.97369 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 9.18 71.98 0.66 -1.58 16 2 C -0.01 -0.21 3.25 -11.54 -0.04 -0.25 16 3 C -0.13 -2.97 9.17 71.98 0.66 -2.31 16 4 C 0.22 6.09 6.39 138.13 0.88 6.98 16 5 N -0.52 -16.34 11.25 -188.13 -2.12 -18.45 16 6 C -0.05 -1.38 11.87 83.52 0.99 -0.39 16 7 C -0.06 -1.62 11.58 83.09 0.96 -0.66 16 8 N -0.44 -11.98 2.24 -518.34 -1.16 -13.15 16 9 C 0.08 1.88 6.16 85.63 0.53 2.41 16 10 C 0.50 14.87 7.71 87.66 0.68 15.55 16 11 O -0.57 -22.28 16.08 -3.04 -0.05 -22.33 16 12 N -0.69 -20.33 5.08 -437.29 -2.22 -22.55 16 13 C 0.13 4.05 2.91 46.10 0.13 4.18 16 14 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 15 C -0.10 -2.89 5.23 30.30 0.16 -2.73 16 16 C -0.10 -2.93 5.76 29.51 0.17 -2.76 16 17 C -0.13 -4.50 4.96 28.36 0.14 -4.36 16 18 C 0.13 5.55 5.22 83.58 0.44 5.99 16 19 N -0.60 -26.74 2.62 -708.84 -1.86 -28.60 16 20 C -0.35 -17.55 9.46 84.03 0.80 -16.76 16 21 H 0.05 2.48 8.05 -2.91 -0.02 2.46 16 22 C -0.05 -2.65 4.53 84.86 0.38 -2.26 16 23 N -0.92 -49.73 11.99 21.65 0.26 -49.47 16 24 Si 1.08 48.03 30.05 68.60 2.06 50.09 16 25 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.16 6.33 4.74 87.43 0.41 6.74 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.65 6.85 -2.39 -0.02 1.64 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.19 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.19 4.28 8.06 -2.91 -0.02 4.25 16 38 H 0.15 2.24 7.30 -2.39 -0.02 2.22 16 39 H 0.14 2.68 8.14 -2.38 -0.02 2.67 16 40 H 0.41 10.88 8.44 -92.71 -0.78 10.10 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.81 6.58 -2.39 -0.02 1.79 16 43 H 0.06 1.84 6.28 -2.39 -0.02 1.83 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 46 H 0.05 2.02 4.65 -2.39 -0.01 2.01 16 47 H 0.03 1.32 8.13 -2.39 -0.02 1.30 16 48 H 0.06 3.04 5.61 -2.38 -0.01 3.03 16 49 H 0.27 14.19 4.95 -92.71 -0.46 13.73 16 50 H 0.01 0.37 7.80 -2.39 -0.02 0.35 16 51 H 0.04 1.61 6.89 -2.39 -0.02 1.59 16 Total: -1.00 -68.78 395.40 3.32 -65.45 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.45 Total: 31.23 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 7.96 Total: 7.78 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -7.10 Total: -132.22 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.06 Total: 50.09 kcal Total: -68.78 3.32 -65.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034423464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.301 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds