Wall clock time and date at job start Tue Mar 31 2020 19:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47210 * 120.00178 * 2 1 3 5 5 C 1.39671 * 126.06875 * 274.99525 * 4 2 1 6 6 C 1.38407 * 105.35818 * 179.97438 * 5 4 2 7 7 C 1.47160 * 126.88172 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99998 * 184.50589 * 7 6 5 9 9 N 1.34777 * 120.00502 * 4.50270 * 7 6 5 10 10 C 1.46494 * 120.00192 * 174.95516 * 9 7 6 11 11 H 1.08996 * 109.24912 * 324.66130 * 10 9 7 12 12 C 1.54849 * 109.35824 * 204.99899 * 10 9 7 13 13 C 1.50123 * 110.81699 * 200.92549 * 12 10 9 14 14 C 1.52527 * 105.41358 * 97.68374 * 13 12 10 15 15 C 1.46236 * 114.28150 * 270.59397 * 14 13 12 16 16 N 1.50170 * 107.52951 * 58.40509 * 15 14 13 17 17 C 1.36939 * 120.53407 * 109.56875 * 16 15 14 18 18 H 1.08001 * 120.00319 * 155.45407 * 17 16 15 19 19 C 1.38807 * 120.00120 * 335.45385 * 17 16 15 20 20 N 1.31618 * 120.00043 * 335.06169 * 19 17 16 21 21 Si 1.86799 * 120.00198 * 155.06205 * 19 17 16 22 22 H 1.48497 * 109.47137 * 265.00698 * 21 19 17 23 23 H 1.48508 * 109.47288 * 145.00921 * 21 19 17 24 24 H 1.48506 * 109.47083 * 25.01097 * 21 19 17 25 25 C 1.43431 * 118.92981 * 289.84459 * 16 15 14 26 26 N 1.36595 * 106.23202 * 0.26753 * 6 5 4 27 27 C 1.46503 * 125.18899 * 179.73955 * 26 6 5 28 28 N 1.28447 * 109.62053 * 359.54819 * 26 6 5 29 29 H 1.09003 * 109.46875 * 300.00030 * 1 2 3 30 30 H 1.09005 * 109.47144 * 59.99285 * 1 2 3 31 31 H 1.08990 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47143 * 240.00447 * 2 1 3 33 33 H 1.09000 * 109.47126 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47118 * 300.00023 * 3 2 1 35 35 H 1.09003 * 109.47191 * 60.00163 * 3 2 1 36 36 H 1.07997 * 127.32323 * 359.97438 * 5 4 2 37 37 H 0.97005 * 119.99374 * 354.95983 * 9 7 6 38 38 H 1.09001 * 109.20458 * 80.58658 * 12 10 9 39 39 H 1.08995 * 109.20825 * 321.27714 * 12 10 9 40 40 H 1.08999 * 110.25255 * 338.71551 * 13 12 10 41 41 H 1.09003 * 110.37185 * 216.72149 * 13 12 10 42 42 H 1.08997 * 108.52169 * 149.34940 * 14 13 12 43 43 H 1.09005 * 108.40020 * 31.74548 * 14 13 12 44 44 H 1.08998 * 109.84674 * 298.90038 * 15 14 13 45 45 H 1.09001 * 109.90122 * 177.94146 * 15 14 13 46 46 H 0.97007 * 120.00491 * 180.02562 * 20 19 17 47 47 H 1.09004 * 108.15719 * 213.03704 * 25 16 15 48 48 H 1.09004 * 108.15862 * 329.59404 * 25 16 15 49 49 H 1.08998 * 109.47312 * 88.57567 * 27 26 6 50 50 H 1.09006 * 109.46653 * 208.57757 * 27 26 6 51 51 H 1.08996 * 109.46993 * 328.56554 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6849 -1.1661 3.2936 7 6 3.0336 -1.0831 4.7209 8 8 3.5157 -2.0461 5.2863 9 7 2.8189 0.0601 5.4017 10 6 3.0619 0.1095 6.8455 11 1 2.7935 -0.8497 7.2881 12 6 2.1928 1.2262 7.4744 13 6 2.7526 1.6553 8.7997 14 6 3.5693 2.9100 8.5077 15 6 4.9676 2.6515 8.1667 16 7 4.9812 1.7568 6.9607 17 6 5.3860 2.2359 5.7434 18 1 5.7719 1.5573 4.9971 19 6 5.3005 3.5938 5.4687 20 7 4.4261 4.3410 6.1088 21 14 6.4263 4.3610 4.1906 22 1 7.6206 4.9330 4.8625 23 1 5.6986 5.4384 3.4728 24 1 6.8544 3.3215 3.2203 25 6 4.5575 0.3939 7.1031 26 7 2.7666 -2.2695 2.4926 27 6 3.2259 -3.5927 2.9223 28 7 2.3755 -1.9710 1.3061 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.0262 0.8829 2.7820 37 1 2.5033 0.8502 4.9356 38 1 1.1785 0.8535 7.6173 39 1 2.1677 2.0830 6.8012 40 1 3.3938 0.8747 9.2090 41 1 1.9459 1.8838 9.4962 42 1 3.5405 3.5541 9.3864 43 1 3.1023 3.4388 7.6767 44 1 5.4664 2.1567 9.0001 45 1 5.4731 3.5895 7.9372 46 1 4.3661 5.2899 5.9166 47 1 5.1384 -0.2164 6.4115 48 1 4.7946 0.0685 8.1161 49 1 2.3800 -4.1650 3.3029 50 1 3.6675 -4.1169 2.0747 51 1 3.9722 -3.4805 3.7088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034467704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:09 Heat of formation + Delta-G solvation = 56.313757 kcal Electronic energy + Delta-G solvation = -30727.669900 eV Core-core repulsion = 26857.209871 eV Total energy + Delta-G solvation = -3870.460030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.40154 -39.27509 -37.61986 -35.91643 -34.30563 -33.19454 -32.23974 -31.32078 -30.83285 -29.48152 -27.17677 -26.65888 -26.15539 -24.44933 -23.29522 -22.87967 -22.04239 -20.37934 -19.81353 -19.28115 -18.79077 -17.46494 -16.65370 -16.15903 -15.94883 -15.43861 -15.01971 -14.78839 -14.50310 -14.18002 -13.96851 -13.84252 -13.76504 -13.41270 -13.24493 -13.21366 -12.50673 -12.43729 -12.37683 -12.25196 -12.06648 -11.80967 -11.60080 -11.39314 -11.36655 -11.18580 -11.10530 -10.83494 -10.78631 -10.48545 -10.41795 -10.14065 -10.00570 -9.77730 -9.60071 -9.43998 -9.26185 -8.97238 -8.72611 -8.62904 -8.33907 -6.73982 -5.85654 -3.20943 1.51256 2.55088 2.69057 3.35340 3.44237 3.46787 3.56105 3.66140 4.44445 4.48258 4.79404 5.01066 5.03170 5.18296 5.22180 5.27225 5.33181 5.40392 5.43638 5.46569 5.59800 5.61487 5.63211 5.69489 5.74852 5.86846 5.92038 5.99291 6.04127 6.08577 6.17627 6.21156 6.25116 6.35920 6.41477 6.48863 6.57659 6.64345 6.82072 6.87649 6.88651 6.93162 7.00405 7.16030 7.21154 7.49927 7.72715 7.94793 7.96169 8.23059 8.38379 8.57667 9.14586 9.82752 10.37103 11.20685 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004435 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.675521 B = 6311.380083 C = 7706.174403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.146 4.146 4 C 0.030 3.970 5 C -0.180 4.180 6 C -0.026 4.026 7 C 0.586 3.414 8 O -0.558 6.558 9 N -0.681 5.681 10 C 0.120 3.880 11 H 0.072 0.928 12 C -0.111 4.111 13 C -0.110 4.110 14 C -0.136 4.136 15 C 0.167 3.833 16 N -0.581 5.581 17 C -0.245 4.245 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.280 1.280 25 C 0.151 3.849 26 N -0.262 5.262 27 C 0.088 3.912 28 N -0.285 5.285 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.160 0.840 37 H 0.405 0.595 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.050 0.950 42 H 0.025 0.975 43 H 0.106 0.894 44 H 0.008 0.992 45 H 0.079 0.921 46 H 0.252 0.748 47 H 0.039 0.961 48 H 0.037 0.963 49 H 0.079 0.921 50 H 0.089 0.911 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 -7.742 -5.007 12.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.203 4.203 4 C -0.127 4.127 5 C -0.209 4.209 6 C -0.155 4.155 7 C 0.371 3.629 8 O -0.438 6.438 9 N -0.329 5.329 10 C 0.012 3.988 11 H 0.090 0.910 12 C -0.149 4.149 13 C -0.148 4.148 14 C -0.175 4.175 15 C 0.044 3.956 16 N -0.302 5.302 17 C -0.375 4.375 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.020 3.980 26 N -0.049 5.049 27 C -0.052 4.052 28 N -0.118 5.118 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.177 0.823 37 H 0.240 0.760 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.124 0.876 44 H 0.026 0.974 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.266 -9.372 -5.156 12.931 hybrid contribution 0.305 1.551 -0.435 1.639 sum -6.961 -7.821 -5.591 11.869 Atomic orbital electron populations 1.21809 0.94167 1.01872 1.02023 1.19385 0.95427 0.95054 0.92873 1.21844 1.01655 0.94566 1.02284 1.21863 1.04457 0.90082 0.96279 1.22100 1.06361 0.99632 0.92817 1.21543 1.10502 0.88915 0.94494 1.16836 0.78657 0.83780 0.83632 1.90718 1.45769 1.37491 1.69839 1.45726 1.65473 1.11926 1.09789 1.22795 0.99973 0.98015 0.77989 0.90980 1.21685 0.96409 0.98929 0.97870 1.20946 0.99001 0.99261 0.95634 1.21055 0.99297 0.95774 1.01329 1.20085 0.94389 0.95040 0.86134 1.44261 1.73355 1.06806 1.05729 1.19103 1.34267 0.91508 0.92597 0.91900 1.24813 0.98057 0.97790 0.98358 1.69996 1.32703 1.06004 1.44933 0.86474 0.81269 0.78998 0.81310 1.21674 1.21963 1.20567 1.20703 0.90947 0.88032 0.98288 1.45448 1.44769 1.09694 1.04993 1.22295 1.01827 0.78913 1.02173 1.73049 1.17575 1.17914 1.03225 0.92267 0.92189 0.92751 0.90135 0.92228 0.92127 0.91852 0.82265 0.75999 0.94207 0.89856 0.92446 0.93173 0.95675 0.87626 0.97402 0.90259 0.93782 0.94296 0.94482 0.90217 0.89278 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.18 37.16 0.34 -1.06 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.15 -1.59 8.79 37.16 0.33 -1.26 16 4 C 0.03 0.44 6.13 -82.47 -0.51 -0.07 16 5 C -0.18 -2.77 9.65 -38.98 -0.38 -3.15 16 6 C -0.03 -0.44 6.96 -82.06 -0.57 -1.01 16 7 C 0.59 10.60 7.60 -12.64 -0.10 10.51 16 8 O -0.56 -10.97 14.30 5.25 0.08 -10.89 16 9 N -0.68 -12.06 5.07 -53.31 -0.27 -12.33 16 10 C 0.12 2.16 2.87 -66.22 -0.19 1.97 16 11 H 0.07 1.29 7.65 -51.93 -0.40 0.89 16 12 C -0.11 -1.90 5.23 -27.19 -0.14 -2.05 16 13 C -0.11 -1.87 5.76 -28.40 -0.16 -2.04 16 14 C -0.14 -2.70 5.06 -30.19 -0.15 -2.85 16 15 C 0.17 3.66 5.25 -5.20 -0.03 3.63 16 16 N -0.58 -13.32 2.60 -175.40 -0.46 -13.78 16 17 C -0.25 -6.22 9.57 -15.06 -0.14 -6.36 16 18 H 0.06 1.68 7.93 -52.49 -0.42 1.27 16 19 C 0.01 0.22 4.74 -17.43 -0.08 0.14 16 20 N -0.89 -22.91 9.79 55.49 0.54 -22.36 16 21 Si 0.89 20.80 29.62 -169.99 -5.04 15.76 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.10 4.74 -4.93 -0.02 3.08 16 26 N -0.26 -4.11 3.75 -63.88 -0.24 -4.35 16 27 C 0.09 1.09 10.83 59.85 0.65 1.74 16 28 N -0.28 -4.48 11.90 33.64 0.40 -4.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.70 7.37 -51.93 -0.38 0.32 16 36 H 0.16 2.24 7.04 -52.49 -0.37 1.87 16 37 H 0.40 7.03 7.47 -40.82 -0.30 6.72 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.64 6.58 -51.93 -0.34 1.30 16 40 H 0.06 0.96 6.28 -51.93 -0.33 0.64 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.11 2.40 5.11 -51.93 -0.27 2.13 16 44 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 45 H 0.08 1.95 6.34 -51.93 -0.33 1.62 16 46 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 47 H 0.04 0.88 7.69 -51.93 -0.40 0.48 16 48 H 0.04 0.72 6.89 -51.93 -0.36 0.37 16 49 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.11 1.51 6.31 -51.93 -0.33 1.18 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -28.21 392.75 -8.96 -37.17 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.43 Total: 8.11 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.47 Total: 0.83 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.02 Total: -56.90 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.04 Total: 15.76 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.21 -8.96 -37.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034467704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.480 kcal (2) G-P(sol) polarization free energy of solvation -28.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds