Wall clock time and date at job start Tue Mar 31 2020 19:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47210 * 120.00178 * 2 1 3 5 5 C 1.39671 * 126.06875 * 274.99525 * 4 2 1 6 6 C 1.38407 * 105.35818 * 179.97438 * 5 4 2 7 7 C 1.47160 * 126.88172 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99998 * 184.50589 * 7 6 5 9 9 N 1.34777 * 120.00502 * 4.50270 * 7 6 5 10 10 C 1.46494 * 120.00192 * 174.95516 * 9 7 6 11 11 H 1.08996 * 109.24912 * 324.66130 * 10 9 7 12 12 C 1.54849 * 109.35824 * 204.99899 * 10 9 7 13 13 C 1.50123 * 110.81699 * 200.92549 * 12 10 9 14 14 C 1.52527 * 105.41358 * 97.68374 * 13 12 10 15 15 C 1.46236 * 114.28150 * 270.59397 * 14 13 12 16 16 N 1.50170 * 107.52951 * 58.40509 * 15 14 13 17 17 C 1.36939 * 120.53407 * 109.56875 * 16 15 14 18 18 H 1.08001 * 120.00319 * 155.45407 * 17 16 15 19 19 C 1.38807 * 120.00120 * 335.45385 * 17 16 15 20 20 N 1.31618 * 120.00043 * 335.06169 * 19 17 16 21 21 Si 1.86799 * 120.00198 * 155.06205 * 19 17 16 22 22 H 1.48497 * 109.47137 * 265.00698 * 21 19 17 23 23 H 1.48508 * 109.47288 * 145.00921 * 21 19 17 24 24 H 1.48506 * 109.47083 * 25.01097 * 21 19 17 25 25 C 1.43431 * 118.92981 * 289.84459 * 16 15 14 26 26 N 1.36595 * 106.23202 * 0.26753 * 6 5 4 27 27 C 1.46503 * 125.18899 * 179.73955 * 26 6 5 28 28 N 1.28447 * 109.62053 * 359.54819 * 26 6 5 29 29 H 1.09003 * 109.46875 * 300.00030 * 1 2 3 30 30 H 1.09005 * 109.47144 * 59.99285 * 1 2 3 31 31 H 1.08990 * 109.47164 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47143 * 240.00447 * 2 1 3 33 33 H 1.09000 * 109.47126 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47118 * 300.00023 * 3 2 1 35 35 H 1.09003 * 109.47191 * 60.00163 * 3 2 1 36 36 H 1.07997 * 127.32323 * 359.97438 * 5 4 2 37 37 H 0.97005 * 119.99374 * 354.95983 * 9 7 6 38 38 H 1.09001 * 109.20458 * 80.58658 * 12 10 9 39 39 H 1.08995 * 109.20825 * 321.27714 * 12 10 9 40 40 H 1.08999 * 110.25255 * 338.71551 * 13 12 10 41 41 H 1.09003 * 110.37185 * 216.72149 * 13 12 10 42 42 H 1.08997 * 108.52169 * 149.34940 * 14 13 12 43 43 H 1.09005 * 108.40020 * 31.74548 * 14 13 12 44 44 H 1.08998 * 109.84674 * 298.90038 * 15 14 13 45 45 H 1.09001 * 109.90122 * 177.94146 * 15 14 13 46 46 H 0.97007 * 120.00491 * 180.02562 * 20 19 17 47 47 H 1.09004 * 108.15719 * 213.03704 * 25 16 15 48 48 H 1.09004 * 108.15862 * 329.59404 * 25 16 15 49 49 H 1.08998 * 109.47312 * 88.57567 * 27 26 6 50 50 H 1.09006 * 109.46653 * 208.57757 * 27 26 6 51 51 H 1.08996 * 109.46993 * 328.56554 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6849 -1.1661 3.2936 7 6 3.0336 -1.0831 4.7209 8 8 3.5157 -2.0461 5.2863 9 7 2.8189 0.0601 5.4017 10 6 3.0619 0.1095 6.8455 11 1 2.7935 -0.8497 7.2881 12 6 2.1928 1.2262 7.4744 13 6 2.7526 1.6553 8.7997 14 6 3.5693 2.9100 8.5077 15 6 4.9676 2.6515 8.1667 16 7 4.9812 1.7568 6.9607 17 6 5.3860 2.2359 5.7434 18 1 5.7719 1.5573 4.9971 19 6 5.3005 3.5938 5.4687 20 7 4.4261 4.3410 6.1088 21 14 6.4263 4.3610 4.1906 22 1 7.6206 4.9330 4.8625 23 1 5.6986 5.4384 3.4728 24 1 6.8544 3.3215 3.2203 25 6 4.5575 0.3939 7.1031 26 7 2.7666 -2.2695 2.4926 27 6 3.2259 -3.5927 2.9223 28 7 2.3755 -1.9710 1.3061 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.0262 0.8829 2.7820 37 1 2.5033 0.8502 4.9356 38 1 1.1785 0.8535 7.6173 39 1 2.1677 2.0830 6.8012 40 1 3.3938 0.8747 9.2090 41 1 1.9459 1.8838 9.4962 42 1 3.5405 3.5541 9.3864 43 1 3.1023 3.4388 7.6767 44 1 5.4664 2.1567 9.0001 45 1 5.4731 3.5895 7.9372 46 1 4.3661 5.2899 5.9166 47 1 5.1384 -0.2164 6.4115 48 1 4.7946 0.0685 8.1161 49 1 2.3800 -4.1650 3.3029 50 1 3.6675 -4.1169 2.0747 51 1 3.9722 -3.4805 3.7088 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034467704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:07 Heat of formation + Delta-G solvation = 41.167377 kcal Electronic energy + Delta-G solvation = -30728.326697 eV Core-core repulsion = 26857.209871 eV Total energy + Delta-G solvation = -3871.116826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.59381 -40.75285 -39.19056 -36.89934 -35.87701 -34.82098 -33.34676 -32.92225 -32.41925 -30.93228 -28.05412 -27.90611 -27.68315 -25.96972 -24.89295 -24.20754 -23.28612 -21.77766 -21.17180 -20.83502 -20.04964 -18.72710 -18.51781 -17.37955 -17.27540 -16.86537 -16.68951 -16.23942 -15.91376 -15.56475 -15.40465 -15.13312 -14.96721 -14.87033 -14.57497 -14.19776 -14.01739 -13.84572 -13.50343 -13.41095 -13.37420 -13.28010 -13.17930 -12.88735 -12.66827 -12.35579 -12.31128 -12.30116 -12.15385 -12.02629 -11.90488 -11.80265 -11.48051 -11.29410 -11.11244 -10.98912 -10.89846 -10.46426 -10.26086 -9.92414 -9.85370 -8.59093 -7.81025 -5.17396 0.21947 1.40250 1.44996 1.51406 1.52664 1.56328 2.17932 2.33084 2.55432 3.30334 3.37885 3.56990 3.62305 3.90588 3.99693 4.13037 4.19442 4.27075 4.30886 4.31693 4.43939 4.47682 4.55605 4.56492 4.59829 4.64426 4.69017 4.74679 4.86656 4.87336 4.92768 5.04584 5.05373 5.08674 5.18340 5.24911 5.31785 5.35347 5.42001 5.44874 5.46921 5.51999 5.62505 5.69277 5.73735 5.74553 5.79444 6.24900 6.43703 6.54334 7.02036 7.15551 7.21956 7.93900 8.45337 9.21708 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004435 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.675521 B = 6311.380083 C = 7706.174403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.007 4.007 3 C -0.144 4.144 4 C 0.027 3.973 5 C -0.181 4.181 6 C -0.049 4.049 7 C 0.586 3.414 8 O -0.577 6.577 9 N -0.680 5.680 10 C 0.127 3.873 11 H 0.081 0.919 12 C -0.101 4.101 13 C -0.102 4.102 14 C -0.129 4.129 15 C 0.169 3.831 16 N -0.590 5.590 17 C -0.248 4.248 18 H 0.042 0.958 19 C -0.022 4.022 20 N -0.899 5.899 21 Si 0.935 3.065 22 H -0.295 1.295 23 H -0.292 1.292 24 H -0.285 1.285 25 C 0.154 3.846 26 N -0.266 5.266 27 C 0.084 3.916 28 N -0.293 5.293 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.167 0.833 37 H 0.406 0.594 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.078 0.922 44 H 0.023 0.977 45 H 0.048 0.952 46 H 0.248 0.752 47 H 0.011 0.989 48 H 0.050 0.950 49 H 0.095 0.905 50 H 0.111 0.889 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 -8.063 -5.204 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 C -0.202 4.202 4 C -0.129 4.129 5 C -0.210 4.210 6 C -0.177 4.177 7 C 0.372 3.628 8 O -0.459 6.459 9 N -0.328 5.328 10 C 0.020 3.980 11 H 0.099 0.901 12 C -0.139 4.139 13 C -0.140 4.140 14 C -0.168 4.168 15 C 0.046 3.954 16 N -0.312 5.312 17 C -0.379 4.379 18 H 0.060 0.940 19 C -0.219 4.219 20 N -0.543 5.543 21 Si 0.766 3.234 22 H -0.222 1.222 23 H -0.219 1.219 24 H -0.211 1.211 25 C 0.025 3.975 26 N -0.054 5.054 27 C -0.055 4.055 28 N -0.127 5.127 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.185 0.815 37 H 0.241 0.759 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.030 0.970 48 H 0.068 0.932 49 H 0.114 0.886 50 H 0.129 0.871 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.647 -9.705 -5.347 14.055 hybrid contribution 0.785 1.610 -0.383 1.831 sum -7.862 -8.096 -5.731 12.657 Atomic orbital electron populations 1.21774 0.92699 1.01859 1.03010 1.19528 0.96557 0.95002 0.91603 1.21841 1.00682 0.94371 1.03257 1.22399 1.03688 0.89797 0.97047 1.22294 1.05835 0.99807 0.93100 1.21485 1.12033 0.90100 0.94106 1.17021 0.78079 0.83480 0.84206 1.90698 1.46640 1.38082 1.70455 1.45705 1.65385 1.11956 1.09755 1.22636 0.98149 0.98824 0.78422 0.90105 1.21574 0.97563 0.97413 0.97325 1.20917 0.99389 0.97742 0.95974 1.20885 0.97956 0.97278 1.00634 1.20049 0.95724 0.93608 0.86000 1.44293 1.73997 1.07617 1.05261 1.18980 1.34318 0.91412 0.93158 0.93983 1.25195 0.98898 0.98033 0.99814 1.70098 1.33023 1.05672 1.45538 0.85768 0.79822 0.78056 0.79776 1.22219 1.21871 1.21082 1.20678 0.92335 0.86324 0.98209 1.45753 1.44506 1.10296 1.04796 1.22467 1.02244 0.78056 1.02770 1.73053 1.17871 1.18517 1.03212 0.92571 0.89926 0.93247 0.89554 0.93719 0.89818 0.92247 0.81513 0.75883 0.91616 0.92430 0.91851 0.90418 0.94552 0.90400 0.95926 0.93355 0.94197 0.97050 0.93219 0.88621 0.87056 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 2 C -0.01 -0.15 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -2.93 8.79 71.98 0.63 -2.30 16 4 C 0.03 0.77 6.13 43.05 0.26 1.03 16 5 C -0.18 -5.53 9.65 22.66 0.22 -5.31 16 6 C -0.05 -1.63 6.96 40.79 0.28 -1.35 16 7 C 0.59 21.33 7.60 86.59 0.66 21.99 16 8 O -0.58 -22.82 14.30 -4.14 -0.06 -22.88 16 9 N -0.68 -24.07 5.07 -440.82 -2.24 -26.30 16 10 C 0.13 4.47 2.87 46.10 0.13 4.60 16 11 H 0.08 2.75 7.65 -2.39 -0.02 2.73 16 12 C -0.10 -3.27 5.23 30.30 0.16 -3.12 16 13 C -0.10 -3.20 5.76 29.51 0.17 -3.04 16 14 C -0.13 -4.96 5.06 28.36 0.14 -4.82 16 15 C 0.17 7.37 5.25 83.58 0.44 7.81 16 16 N -0.59 -27.22 2.60 -708.85 -1.84 -29.06 16 17 C -0.25 -12.82 9.57 84.03 0.80 -12.02 16 18 H 0.04 2.33 7.93 -2.91 -0.02 2.30 16 19 C -0.02 -1.11 4.74 84.86 0.40 -0.71 16 20 N -0.90 -46.56 9.79 21.65 0.21 -46.35 16 21 Si 0.94 43.25 29.62 68.60 2.03 45.29 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 C 0.15 6.30 4.74 87.42 0.41 6.72 16 26 N -0.27 -8.24 3.75 -356.02 -1.33 -9.58 16 27 C 0.08 2.02 10.83 127.77 1.38 3.40 16 28 N -0.29 -8.99 11.90 -47.50 -0.57 -9.55 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.25 7.37 -2.39 -0.02 1.23 16 36 H 0.17 4.68 7.04 -2.91 -0.02 4.66 16 37 H 0.41 14.19 7.47 -92.70 -0.69 13.50 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.06 2.22 6.58 -2.39 -0.02 2.20 16 40 H 0.06 1.93 6.28 -2.39 -0.02 1.92 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.08 3.50 5.11 -2.38 -0.01 3.49 16 44 H 0.02 0.91 8.13 -2.39 -0.02 0.89 16 45 H 0.05 2.39 6.34 -2.39 -0.02 2.38 16 46 H 0.25 12.75 8.31 -92.70 -0.77 11.98 16 47 H 0.01 0.52 7.69 -2.39 -0.02 0.50 16 48 H 0.05 1.89 6.89 -2.38 -0.02 1.87 16 49 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 50 H 0.11 2.12 8.14 -2.38 -0.02 2.11 16 51 H 0.10 2.67 6.31 -2.39 -0.02 2.65 16 Total: -1.00 -60.52 392.75 3.17 -57.36 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.24 Total: 30.12 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.73 Total: 10.97 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -5.77 Total: -120.84 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.29 kcal Total: -60.52 3.17 -57.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034467704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.524 kcal (2) G-P(sol) polarization free energy of solvation -60.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds