Wall clock time and date at job start Tue Mar 31 2020 19:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47083 * 2 1 4 4 C 1.50703 * 109.46822 * 120.00076 * 2 1 3 5 5 C 1.39672 * 126.06708 * 275.28271 * 4 2 1 6 6 C 1.38400 * 105.35570 * 180.09867 * 5 4 2 7 7 C 1.47172 * 126.88362 * 179.91711 * 6 5 4 8 8 O 1.21628 * 120.00183 * 184.87872 * 7 6 5 9 9 N 1.34780 * 119.99564 * 4.88210 * 7 6 5 10 10 C 1.46504 * 119.99673 * 175.20078 * 9 7 6 11 11 H 1.09002 * 109.25639 * 35.32224 * 10 9 7 12 12 C 1.50879 * 109.36168 * 154.99845 * 10 9 7 13 13 C 1.52577 * 109.37390 * 212.08970 * 12 10 9 14 14 C 1.47095 * 114.32688 * 274.97694 * 13 12 10 15 15 C 1.54865 * 110.32228 * 62.80260 * 14 13 12 16 16 N 1.44581 * 109.60055 * 288.73810 * 15 14 13 17 17 C 1.36944 * 118.63793 * 270.72183 * 16 15 14 18 18 H 1.08000 * 120.00357 * 20.53275 * 17 16 15 19 19 C 1.38811 * 119.99522 * 200.52449 * 17 16 15 20 20 N 1.31614 * 120.00075 * 23.21763 * 19 17 16 21 21 Si 1.86803 * 119.99835 * 203.21280 * 19 17 16 22 22 H 1.48502 * 109.46934 * 95.00128 * 21 19 17 23 23 H 1.48498 * 109.47289 * 214.99867 * 21 19 17 24 24 H 1.48501 * 109.47453 * 335.00458 * 21 19 17 25 25 C 1.47599 * 122.71636 * 90.70185 * 16 15 14 26 26 N 1.36593 * 106.23537 * 359.64597 * 6 5 4 27 27 C 1.46499 * 125.19325 * 180.24731 * 26 6 5 28 28 N 1.28446 * 109.61993 * 0.23329 * 26 6 5 29 29 H 1.09001 * 109.47273 * 300.00230 * 1 2 3 30 30 H 1.09001 * 109.47152 * 59.99893 * 1 2 3 31 31 H 1.09001 * 109.47566 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47273 * 239.99770 * 2 1 3 33 33 H 1.09004 * 109.47273 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47242 * 299.99516 * 3 2 1 35 35 H 1.09001 * 109.47254 * 59.99758 * 3 2 1 36 36 H 1.08002 * 127.32262 * 359.96549 * 5 4 2 37 37 H 0.96995 * 120.00286 * 355.19893 * 9 7 6 38 38 H 1.09001 * 109.49202 * 92.11940 * 12 10 9 39 39 H 1.09001 * 109.49412 * 332.06575 * 12 10 9 40 40 H 1.09001 * 108.51111 * 36.23331 * 13 12 10 41 41 H 1.09002 * 108.51042 * 153.72656 * 13 12 10 42 42 H 1.08993 * 109.32927 * 183.06499 * 14 13 12 43 43 H 1.09000 * 109.32843 * 302.71553 * 14 13 12 44 44 H 1.09000 * 109.44858 * 48.77114 * 15 14 13 45 45 H 1.08991 * 109.45037 * 168.69673 * 15 14 13 46 46 H 0.97005 * 119.99927 * 179.97438 * 20 19 17 47 47 H 1.08999 * 108.94879 * 78.57402 * 25 16 15 48 48 H 1.09004 * 108.94736 * 197.20406 * 25 16 15 49 49 H 1.09011 * 109.46948 * 92.25219 * 27 26 6 50 50 H 1.09001 * 109.47234 * 212.24998 * 27 26 6 51 51 H 1.09000 * 109.47387 * 332.25477 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2083 -0.1418 2.4940 6 6 2.6844 -1.1661 3.2938 7 6 3.0326 -1.0832 4.7213 8 8 3.5255 -2.0423 5.2838 9 7 2.8050 0.0556 5.4054 10 6 3.0529 0.1052 6.8484 11 1 3.9194 -0.5120 7.0857 12 6 3.3262 1.5308 7.2602 13 6 4.3058 1.5408 8.4300 14 6 3.6760 1.3770 9.7492 15 6 2.9789 -0.0025 9.8448 16 7 1.7979 -0.0081 9.0107 17 6 0.6087 0.3994 9.5540 18 1 0.6031 1.0146 10.4416 19 6 -0.5895 0.0218 8.9636 20 7 -0.6388 -1.0508 8.2025 21 14 -2.1319 1.0361 9.2494 22 1 -2.2992 2.0065 8.1378 23 1 -3.3126 0.1371 9.3034 24 1 -2.0101 1.7711 10.5339 25 6 1.8213 -0.4343 7.5978 26 7 2.7607 -2.2710 2.4942 27 6 3.2124 -3.5960 2.9259 28 7 2.3755 -1.9710 1.3062 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.0161 0.8804 2.7846 37 1 2.4771 0.8422 4.9423 38 1 2.3936 2.0071 7.5629 39 1 3.7571 2.0758 6.4204 40 1 5.0241 0.7335 8.2867 41 1 4.8471 2.4868 8.4199 42 1 4.4385 1.4505 10.5245 43 1 2.9356 2.1635 9.8956 44 1 3.6647 -0.7799 9.5080 45 1 2.6935 -0.1940 10.8792 46 1 -1.4763 -1.3149 7.7902 47 1 1.8315 -1.5235 7.5568 48 1 0.9198 -0.0717 7.1038 49 1 2.3536 -4.1864 3.2456 50 1 3.7100 -4.0984 2.0963 51 1 3.9096 -3.4894 3.7569 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034467708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:17 Heat of formation + Delta-G solvation = 52.559866 kcal Electronic energy + Delta-G solvation = -30177.248618 eV Core-core repulsion = 26306.625808 eV Total energy + Delta-G solvation = -3870.622811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.52180 -39.42811 -37.64905 -36.03531 -34.52910 -33.61901 -32.35388 -31.37146 -30.76424 -29.51227 -27.29007 -26.74866 -26.10387 -24.42493 -23.79257 -22.94878 -22.04523 -20.42946 -20.16811 -19.26095 -19.02159 -17.58198 -16.70619 -16.22325 -16.07213 -15.59123 -15.30577 -14.84919 -14.34669 -14.29355 -14.08534 -13.92573 -13.80703 -13.46529 -13.37128 -13.26439 -12.89436 -12.56621 -12.49060 -12.42596 -12.20036 -12.14762 -11.51352 -11.37109 -11.29999 -11.23791 -11.17236 -11.06804 -10.72669 -10.53759 -10.48199 -10.26265 -10.16526 -9.99604 -9.82833 -9.73092 -9.55455 -9.08225 -8.84591 -8.58497 -8.37036 -6.76607 -5.80601 -3.16187 1.39124 2.44329 2.57340 3.34075 3.37829 3.44863 3.45882 3.53641 4.32474 4.49680 4.64574 4.84475 4.94947 5.05823 5.19399 5.21057 5.29662 5.31198 5.31660 5.41819 5.50133 5.51355 5.56520 5.59884 5.62267 5.68359 5.73372 5.82446 5.88291 5.90610 5.98100 6.13995 6.15466 6.20691 6.30157 6.43652 6.50084 6.56362 6.62288 6.63217 6.73055 6.77662 6.84369 6.92442 7.07391 7.31786 7.67853 7.76218 7.82739 8.11938 8.39116 8.43102 9.20006 9.89524 10.32422 11.26445 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.003576 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.240514 B = 7827.093431 C = 8747.910219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.030 3.970 5 C -0.187 4.187 6 C -0.025 4.025 7 C 0.590 3.410 8 O -0.541 6.541 9 N -0.699 5.699 10 C 0.121 3.879 11 H 0.077 0.923 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.148 4.148 15 C 0.154 3.846 16 N -0.587 5.587 17 C -0.259 4.259 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.896 5.896 21 Si 0.893 3.107 22 H -0.289 1.289 23 H -0.293 1.293 24 H -0.279 1.279 25 C 0.171 3.829 26 N -0.258 5.258 27 C 0.083 3.917 28 N -0.282 5.282 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.157 0.843 37 H 0.398 0.602 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.253 0.747 47 H 0.029 0.971 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 3.836 -13.931 16.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.127 4.127 5 C -0.216 4.216 6 C -0.154 4.154 7 C 0.374 3.626 8 O -0.419 6.419 9 N -0.349 5.349 10 C 0.017 3.983 11 H 0.095 0.905 12 C -0.154 4.154 13 C -0.136 4.136 14 C -0.188 4.188 15 C 0.026 3.974 16 N -0.308 5.308 17 C -0.389 4.389 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.540 5.540 21 Si 0.723 3.277 22 H -0.216 1.216 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.045 3.955 26 N -0.044 5.044 27 C -0.057 4.057 28 N -0.115 5.115 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.175 0.825 37 H 0.232 0.768 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.100 0.900 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.403 1.881 -14.129 16.546 hybrid contribution -1.185 1.470 0.363 1.923 sum 7.218 3.351 -13.766 15.900 Atomic orbital electron populations 1.21825 0.93969 1.02214 1.02083 1.19387 0.95614 0.94867 0.92906 1.21826 1.01254 0.94805 1.02235 1.21865 1.04400 0.90173 0.96241 1.22006 1.06945 0.99682 0.92939 1.21527 1.10613 0.88985 0.94293 1.16866 0.78455 0.83679 0.83562 1.90754 1.44641 1.36481 1.70041 1.45843 1.66540 1.12777 1.09732 1.21840 1.01558 0.97359 0.77586 0.90513 1.21286 1.01141 0.95674 0.97317 1.20211 0.97549 1.00417 0.95411 1.21502 0.99463 1.02256 0.95591 1.20735 0.88832 0.92979 0.94868 1.43581 1.04422 1.77039 1.05784 1.19245 0.83300 1.25204 1.11122 0.91209 1.24869 0.97465 0.96411 1.00746 1.70172 1.25766 1.21776 1.36286 0.86407 0.83299 0.80068 0.77927 1.21569 1.21943 1.20378 1.21333 0.93892 0.96909 0.83377 1.45496 1.44450 1.09578 1.04897 1.22398 1.02208 0.78723 1.02370 1.73073 1.17500 1.17684 1.03221 0.92165 0.92147 0.92547 0.90048 0.92455 0.92064 0.92051 0.82495 0.76751 0.89888 0.92935 0.93220 0.93602 0.93372 0.91951 0.94893 0.93533 0.93730 0.95289 0.89993 0.89769 0.89227 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.18 37.16 0.34 -1.01 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.14 -1.16 8.79 37.15 0.33 -0.83 16 4 C 0.03 0.39 6.12 -82.47 -0.51 -0.11 16 5 C -0.19 -2.50 9.65 -38.99 -0.38 -2.87 16 6 C -0.03 -0.40 6.96 -82.06 -0.57 -0.97 16 7 C 0.59 10.32 7.75 -12.63 -0.10 10.22 16 8 O -0.54 -10.87 14.26 5.25 0.07 -10.79 16 9 N -0.70 -11.39 4.97 -55.52 -0.28 -11.66 16 10 C 0.12 2.24 2.31 -68.50 -0.16 2.08 16 11 H 0.08 1.51 6.69 -51.93 -0.35 1.16 16 12 C -0.12 -1.88 5.06 -28.01 -0.14 -2.02 16 13 C -0.10 -1.51 5.15 -29.78 -0.15 -1.66 16 14 C -0.15 -2.50 5.74 -28.58 -0.16 -2.66 16 15 C 0.15 3.14 5.66 -4.08 -0.02 3.12 16 16 N -0.59 -14.10 2.29 -172.10 -0.39 -14.49 16 17 C -0.26 -6.87 9.46 -15.06 -0.14 -7.01 16 18 H 0.07 1.83 7.93 -52.49 -0.42 1.41 16 19 C 0.00 0.10 4.71 -17.43 -0.08 0.02 16 20 N -0.90 -25.81 11.12 55.49 0.62 -25.19 16 21 Si 0.89 21.30 29.61 -169.99 -5.03 16.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 25 C 0.17 4.02 4.32 -2.95 -0.01 4.01 16 26 N -0.26 -3.89 3.75 -63.88 -0.24 -4.13 16 27 C 0.08 1.03 10.94 59.85 0.65 1.68 16 28 N -0.28 -4.19 11.90 33.64 0.40 -3.79 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 36 H 0.16 1.68 7.05 -52.49 -0.37 1.31 16 37 H 0.40 5.38 7.57 -40.82 -0.31 5.07 16 38 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 39 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 40 H 0.05 0.76 7.36 -51.93 -0.38 0.37 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 45 H 0.05 0.96 7.99 -51.93 -0.41 0.55 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 48 H 0.08 2.13 6.09 -51.93 -0.32 1.82 16 49 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 50 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.12 1.53 6.09 -51.93 -0.32 1.22 16 LS Contribution 398.00 15.07 6.00 6.00 Total: -1.00 -31.71 398.00 -8.95 -40.66 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.68 Total: 5.53 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.42 Total: 1.60 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.11 Total: -59.26 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.71 -8.95 -40.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034467708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.217 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds