Wall clock time and date at job start Tue Mar 31 2020 20:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 C 1.53005 * 109.46835 * 240.00301 * 2 1 3 5 5 C 1.50694 * 109.47019 * 120.00304 * 2 1 3 6 6 N 1.30448 * 125.98760 * 242.15490 * 5 2 1 7 7 N 1.39930 * 108.89814 * 179.97438 * 6 5 2 8 8 H 0.97000 * 125.75599 * 180.02562 * 7 6 5 9 9 C 1.34261 * 108.49388 * 359.75090 * 7 6 5 10 10 C 1.38043 * 107.41338 * 0.39458 * 9 7 6 11 11 C 1.47426 * 126.41453 * 179.86996 * 10 9 7 12 12 O 1.21612 * 120.00148 * 174.72544 * 11 10 9 13 13 N 1.34777 * 120.00046 * 354.72376 * 11 10 9 14 14 C 1.46502 * 119.99887 * 179.97438 * 13 11 10 15 15 H 1.08993 * 108.46441 * 322.71771 * 14 13 11 16 16 C 1.52522 * 108.52278 * 204.99900 * 14 13 11 17 17 C 1.50129 * 105.54209 * 149.43770 * 16 14 13 18 18 C 1.54967 * 110.74582 * 97.51326 * 17 16 14 19 19 C 1.54896 * 110.23786 * 321.36381 * 18 17 16 20 20 N 1.43433 * 116.08104 * 318.54066 * 19 18 17 21 21 C 1.36939 * 120.54236 * 271.55189 * 20 19 18 22 22 H 1.07999 * 119.99434 * 331.18964 * 21 20 19 23 23 C 1.38804 * 120.00472 * 151.19063 * 21 20 19 24 24 N 1.31621 * 120.00224 * 339.27130 * 23 21 20 25 25 Si 1.86802 * 120.00210 * 159.27542 * 23 21 20 26 26 H 1.48499 * 109.47399 * 59.99690 * 25 23 21 27 27 H 1.48501 * 109.47335 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46921 * 299.99882 * 25 23 21 29 29 C 1.46245 * 108.40005 * 80.36235 * 14 13 11 30 30 H 1.09008 * 109.46972 * 310.48914 * 1 2 3 31 31 H 1.09001 * 109.47859 * 70.48782 * 1 2 3 32 32 H 1.08997 * 109.47386 * 190.49034 * 1 2 3 33 33 H 1.09003 * 109.46838 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47283 * 300.00387 * 3 2 1 35 35 H 1.08997 * 109.47218 * 60.00703 * 3 2 1 36 36 H 1.09000 * 109.47137 * 290.33873 * 4 2 1 37 37 H 1.09003 * 109.47135 * 50.33928 * 4 2 1 38 38 H 1.09001 * 109.46743 * 170.33694 * 4 2 1 39 39 H 1.07995 * 126.29853 * 180.24506 * 9 7 6 40 40 H 0.96996 * 120.00061 * 359.97438 * 13 11 10 41 41 H 1.08998 * 110.25547 * 268.48271 * 16 14 13 42 42 H 1.09002 * 110.24778 * 30.39518 * 16 14 13 43 43 H 1.08993 * 109.21204 * 218.10294 * 17 16 14 44 44 H 1.09001 * 109.20410 * 337.41574 * 17 16 14 45 45 H 1.09003 * 109.39103 * 201.07571 * 18 17 16 46 46 H 1.09002 * 109.12050 * 81.47691 * 18 17 16 47 47 H 1.09004 * 108.15824 * 196.83052 * 19 18 17 48 48 H 1.09002 * 108.16425 * 80.25862 * 19 18 17 49 49 H 0.96998 * 120.00483 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.84683 * 299.06915 * 29 14 13 51 51 H 1.08998 * 109.84616 * 60.05014 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 2.7526 -0.1814 2.1806 7 7 3.0168 -1.1587 3.1466 8 1 3.5321 -1.0289 3.9581 9 6 2.4318 -2.3050 2.7639 10 6 1.8051 -2.0661 1.5573 11 6 1.0372 -3.0413 0.7618 12 8 0.4510 -2.6811 -0.2409 13 7 0.9848 -4.3321 1.1459 14 6 0.2213 -5.3011 0.3557 15 1 -0.6791 -4.8113 -0.0149 16 6 -0.1932 -6.4510 1.2680 17 6 -1.4960 -6.9529 0.7159 18 6 -1.2684 -8.1901 -0.1890 19 6 0.0223 -8.0112 -1.0265 20 7 0.2395 -6.7056 -1.5792 21 6 -0.2701 -6.3760 -2.8068 22 1 -0.4164 -7.1420 -3.5540 23 6 -0.5984 -5.0576 -3.0909 24 7 -0.8153 -4.2074 -2.1099 25 14 -0.7324 -4.4900 -4.8655 26 1 -1.7820 -5.2785 -5.5596 27 1 -1.0917 -3.0495 -4.8987 28 1 0.5706 -4.6904 -5.5491 29 6 1.0350 -5.7059 -0.7900 30 1 -0.3633 0.6673 0.7816 31 1 -0.3635 0.3432 -0.9686 32 1 -0.3634 -1.0104 0.1871 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.8243 -1.7865 -1.1674 37 1 1.5426 -0.3166 -2.1309 38 1 3.1162 -0.5742 -1.3398 39 1 2.4503 -3.2423 3.3000 40 1 1.4527 -4.6196 1.9455 41 1 0.5566 -7.2416 1.2430 42 1 -0.3290 -6.0928 2.2885 43 1 -2.1548 -7.2233 1.5410 44 1 -1.9642 -6.1635 0.1280 45 1 -2.1200 -8.3102 -0.8588 46 1 -1.1729 -9.0775 0.4367 47 1 -0.0036 -8.7277 -1.8477 48 1 0.8748 -8.2584 -0.3939 49 1 -1.0444 -3.2860 -2.3083 50 1 1.2584 -4.8380 -1.4104 51 1 1.9621 -6.1620 -0.4428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034487973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:02 Heat of formation + Delta-G solvation = 67.790099 kcal Electronic energy + Delta-G solvation = -31614.015606 eV Core-core repulsion = 27744.053228 eV Total energy + Delta-G solvation = -3869.962378 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.37090 -39.00345 -37.32719 -36.31480 -33.86802 -33.00863 -30.98900 -30.79476 -30.52358 -28.98387 -26.79510 -26.68604 -25.98582 -24.16115 -23.35067 -22.54261 -22.03406 -20.10980 -19.54021 -18.77025 -18.12532 -17.95762 -16.52722 -15.87761 -15.21727 -14.96761 -14.75183 -14.66813 -14.27489 -14.04502 -13.85204 -13.71263 -13.57248 -13.26547 -12.89965 -12.64639 -12.28773 -12.15927 -11.83672 -11.79094 -11.62211 -11.28443 -11.20806 -11.07041 -10.93957 -10.83659 -10.65116 -10.62808 -10.60201 -10.22672 -10.06916 -9.99897 -9.75734 -9.67383 -9.45560 -9.37521 -9.29253 -8.68805 -8.55813 -8.33450 -7.97663 -6.49111 -5.54999 -3.01843 1.68739 2.46058 2.76878 3.51727 3.59669 3.60187 4.00866 4.14485 4.56274 4.68633 4.73737 5.11283 5.38515 5.40250 5.51520 5.54040 5.62729 5.65331 5.68753 5.70816 5.88572 5.91479 5.99739 6.06814 6.17874 6.23346 6.28558 6.34072 6.37112 6.38886 6.45569 6.46659 6.48395 6.59950 6.67773 6.73077 6.93239 6.97582 7.02967 7.04773 7.07474 7.16552 7.18502 7.27634 7.45569 7.65477 7.70606 7.75046 8.04960 8.45603 8.65149 9.20821 9.39988 10.02862 10.58355 11.49680 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004909 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.329606 B = 5702.661235 C = 7458.726604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.021 3.979 3 C -0.136 4.136 4 C -0.148 4.148 5 C 0.147 3.853 6 N -0.304 5.304 7 N -0.471 5.471 8 H 0.438 0.562 9 C 0.087 3.913 10 C -0.269 4.269 11 C 0.564 3.436 12 O -0.472 6.472 13 N -0.732 5.732 14 C 0.126 3.874 15 H 0.138 0.862 16 C -0.121 4.121 17 C -0.105 4.105 18 C -0.143 4.143 19 C 0.159 3.841 20 N -0.578 5.578 21 C -0.284 4.284 22 H 0.060 0.940 23 C 0.021 3.979 24 N -0.853 5.853 25 Si 0.887 3.113 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.288 1.288 29 C 0.162 3.838 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.180 0.820 40 H 0.376 0.624 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.034 0.966 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.039 0.961 47 H 0.030 0.970 48 H 0.023 0.977 49 H 0.263 0.737 50 H 0.088 0.912 51 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 3.668 12.776 14.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 C -0.193 4.193 4 C -0.206 4.206 5 C -0.021 4.021 6 N -0.125 5.125 7 N -0.176 5.176 8 H 0.282 0.718 9 C -0.065 4.065 10 C -0.284 4.284 11 C 0.349 3.651 12 O -0.346 6.346 13 N -0.383 5.383 14 C 0.023 3.977 15 H 0.155 0.845 16 C -0.159 4.159 17 C -0.143 4.143 18 C -0.184 4.184 19 C 0.030 3.970 20 N -0.300 5.300 21 C -0.413 4.413 22 H 0.078 0.922 23 C -0.182 4.182 24 N -0.493 5.493 25 Si 0.717 3.283 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.215 1.215 29 C 0.037 3.963 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.197 0.803 40 H 0.207 0.793 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.048 0.952 48 H 0.041 0.959 49 H 0.074 0.926 50 H 0.106 0.894 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 6.187 5.192 12.399 14.798 hybrid contribution 0.119 -0.536 0.001 0.549 sum 6.306 4.656 12.400 14.670 Atomic orbital electron populations 1.22072 0.92402 1.04941 1.00811 1.18958 0.96434 0.93374 0.89360 1.21835 1.00844 0.95246 1.01385 1.22116 0.98734 1.04765 0.94940 1.22480 0.93264 0.91617 0.94759 1.77108 1.22208 1.12684 1.00534 1.46056 1.43058 1.07617 1.20860 0.71810 1.23091 0.95145 0.91982 0.96247 1.20746 1.12429 0.96377 0.98854 1.17258 0.81243 0.81627 0.84945 1.90848 1.42648 1.77362 1.23723 1.46371 1.54054 1.08649 1.29260 1.21255 0.99173 0.87459 0.89806 0.84523 1.21317 0.98610 0.98396 0.97548 1.21299 0.96040 0.99319 0.97641 1.22912 1.01710 0.95730 0.98074 1.20403 0.93111 0.89005 0.94495 1.43937 1.58617 1.09693 1.17715 1.18868 1.40191 0.93268 0.88968 0.92214 1.25002 0.98858 0.97960 0.96411 1.69708 1.45759 1.04842 1.29001 0.86657 0.77617 0.77519 0.86512 1.21421 1.21750 1.21458 1.20332 0.89965 0.93765 0.92215 0.94425 0.92407 0.88391 0.92849 0.92512 0.92801 0.88223 0.92438 0.94368 0.80297 0.79273 0.92304 0.93087 0.94681 0.90381 0.93053 0.94228 0.95201 0.95878 0.92564 0.89420 0.98040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.20 37.16 0.30 -2.06 16 2 C 0.02 0.33 0.75 -155.66 -0.12 0.21 16 3 C -0.14 -1.85 7.92 37.16 0.29 -1.56 16 4 C -0.15 -2.53 8.19 37.16 0.30 -2.22 16 5 C 0.15 2.30 5.64 -82.02 -0.46 1.84 16 6 N -0.30 -4.34 11.93 33.89 0.40 -3.94 16 7 N -0.47 -4.93 7.29 30.85 0.22 -4.71 16 8 H 0.44 2.84 8.96 -182.73 -1.64 1.20 16 9 C 0.09 0.94 11.52 -16.56 -0.19 0.75 16 10 C -0.27 -4.05 5.87 -105.07 -0.62 -4.67 16 11 C 0.56 10.03 6.96 -12.52 -0.09 9.95 16 12 O -0.47 -9.97 7.89 5.27 0.04 -9.93 16 13 N -0.73 -11.91 4.92 -58.29 -0.29 -12.20 16 14 C 0.13 2.47 1.83 -71.38 -0.13 2.34 16 15 H 0.14 3.29 4.37 -51.93 -0.23 3.06 16 16 C -0.12 -2.03 5.22 -28.40 -0.15 -2.18 16 17 C -0.11 -1.93 5.67 -27.12 -0.15 -2.08 16 18 C -0.14 -2.65 6.41 -24.69 -0.16 -2.81 16 19 C 0.16 3.27 5.17 -4.66 -0.02 3.25 16 20 N -0.58 -13.84 2.58 -175.08 -0.45 -14.29 16 21 C -0.28 -7.60 9.55 -15.06 -0.14 -7.74 16 22 H 0.06 1.63 7.91 -52.49 -0.42 1.22 16 23 C 0.02 0.56 4.82 -17.43 -0.08 0.47 16 24 N -0.85 -22.95 8.05 55.49 0.45 -22.50 16 25 Si 0.89 21.83 29.60 -169.99 -5.03 16.80 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 C 0.16 3.64 4.60 -5.20 -0.02 3.61 16 30 H 0.04 0.56 8.11 -51.92 -0.42 0.14 16 31 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 32 H 0.10 1.86 4.84 -51.93 -0.25 1.61 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 2.00 4.58 -51.93 -0.24 1.76 16 37 H 0.06 0.96 8.02 -51.93 -0.42 0.55 16 38 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 39 H 0.18 1.18 7.48 -52.49 -0.39 0.79 16 40 H 0.38 4.72 7.49 -40.82 -0.31 4.41 16 41 H 0.06 0.96 6.29 -51.93 -0.33 0.64 16 42 H 0.05 0.75 8.01 -51.93 -0.42 0.33 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.08 1.73 6.83 -51.93 -0.35 1.38 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.62 8.00 -51.93 -0.42 0.21 16 48 H 0.02 0.44 6.89 -51.93 -0.36 0.08 16 49 H 0.26 7.27 8.18 -40.82 -0.33 6.93 16 50 H 0.09 2.28 5.94 -51.93 -0.31 1.98 16 51 H 0.00 0.03 8.12 -51.93 -0.42 -0.39 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -30.14 376.92 -9.82 -39.96 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -9.41 Total: 8.04 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.44 Total: -2.90 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.34 Total: -57.64 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.04 Total: -9.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.14 -9.82 -39.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034487973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.747 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds