Wall clock time and date at job start Tue Mar 31 2020 20:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 C 1.53005 * 109.46835 * 240.00301 * 2 1 3 5 5 C 1.50694 * 109.47019 * 120.00304 * 2 1 3 6 6 N 1.30448 * 125.98760 * 242.15490 * 5 2 1 7 7 N 1.39930 * 108.89814 * 179.97438 * 6 5 2 8 8 H 0.97000 * 125.75599 * 180.02562 * 7 6 5 9 9 C 1.34261 * 108.49388 * 359.75090 * 7 6 5 10 10 C 1.38043 * 107.41338 * 0.39458 * 9 7 6 11 11 C 1.47426 * 126.41453 * 179.86996 * 10 9 7 12 12 O 1.21612 * 120.00148 * 174.72544 * 11 10 9 13 13 N 1.34777 * 120.00046 * 354.72376 * 11 10 9 14 14 C 1.46502 * 119.99887 * 179.97438 * 13 11 10 15 15 H 1.08993 * 108.46441 * 322.71771 * 14 13 11 16 16 C 1.52522 * 108.52278 * 204.99900 * 14 13 11 17 17 C 1.50129 * 105.54209 * 149.43770 * 16 14 13 18 18 C 1.54967 * 110.74582 * 97.51326 * 17 16 14 19 19 C 1.54896 * 110.23786 * 321.36381 * 18 17 16 20 20 N 1.43433 * 116.08104 * 318.54066 * 19 18 17 21 21 C 1.36939 * 120.54236 * 271.55189 * 20 19 18 22 22 H 1.07999 * 119.99434 * 331.18964 * 21 20 19 23 23 C 1.38804 * 120.00472 * 151.19063 * 21 20 19 24 24 N 1.31621 * 120.00224 * 339.27130 * 23 21 20 25 25 Si 1.86802 * 120.00210 * 159.27542 * 23 21 20 26 26 H 1.48499 * 109.47399 * 59.99690 * 25 23 21 27 27 H 1.48501 * 109.47335 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46921 * 299.99882 * 25 23 21 29 29 C 1.46245 * 108.40005 * 80.36235 * 14 13 11 30 30 H 1.09008 * 109.46972 * 310.48914 * 1 2 3 31 31 H 1.09001 * 109.47859 * 70.48782 * 1 2 3 32 32 H 1.08997 * 109.47386 * 190.49034 * 1 2 3 33 33 H 1.09003 * 109.46838 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47283 * 300.00387 * 3 2 1 35 35 H 1.08997 * 109.47218 * 60.00703 * 3 2 1 36 36 H 1.09000 * 109.47137 * 290.33873 * 4 2 1 37 37 H 1.09003 * 109.47135 * 50.33928 * 4 2 1 38 38 H 1.09001 * 109.46743 * 170.33694 * 4 2 1 39 39 H 1.07995 * 126.29853 * 180.24506 * 9 7 6 40 40 H 0.96996 * 120.00061 * 359.97438 * 13 11 10 41 41 H 1.08998 * 110.25547 * 268.48271 * 16 14 13 42 42 H 1.09002 * 110.24778 * 30.39518 * 16 14 13 43 43 H 1.08993 * 109.21204 * 218.10294 * 17 16 14 44 44 H 1.09001 * 109.20410 * 337.41574 * 17 16 14 45 45 H 1.09003 * 109.39103 * 201.07571 * 18 17 16 46 46 H 1.09002 * 109.12050 * 81.47691 * 18 17 16 47 47 H 1.09004 * 108.15824 * 196.83052 * 19 18 17 48 48 H 1.09002 * 108.16425 * 80.25862 * 19 18 17 49 49 H 0.96998 * 120.00483 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.84683 * 299.06915 * 29 14 13 51 51 H 1.08998 * 109.84616 * 60.05014 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 2.7526 -0.1814 2.1806 7 7 3.0168 -1.1587 3.1466 8 1 3.5321 -1.0289 3.9581 9 6 2.4318 -2.3050 2.7639 10 6 1.8051 -2.0661 1.5573 11 6 1.0372 -3.0413 0.7618 12 8 0.4510 -2.6811 -0.2409 13 7 0.9848 -4.3321 1.1459 14 6 0.2213 -5.3011 0.3557 15 1 -0.6791 -4.8113 -0.0149 16 6 -0.1932 -6.4510 1.2680 17 6 -1.4960 -6.9529 0.7159 18 6 -1.2684 -8.1901 -0.1890 19 6 0.0223 -8.0112 -1.0265 20 7 0.2395 -6.7056 -1.5792 21 6 -0.2701 -6.3760 -2.8068 22 1 -0.4164 -7.1420 -3.5540 23 6 -0.5984 -5.0576 -3.0909 24 7 -0.8153 -4.2074 -2.1099 25 14 -0.7324 -4.4900 -4.8655 26 1 -1.7820 -5.2785 -5.5596 27 1 -1.0917 -3.0495 -4.8987 28 1 0.5706 -4.6904 -5.5491 29 6 1.0350 -5.7059 -0.7900 30 1 -0.3633 0.6673 0.7816 31 1 -0.3635 0.3432 -0.9686 32 1 -0.3634 -1.0104 0.1871 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.8243 -1.7865 -1.1674 37 1 1.5426 -0.3166 -2.1309 38 1 3.1162 -0.5742 -1.3398 39 1 2.4503 -3.2423 3.3000 40 1 1.4527 -4.6196 1.9455 41 1 0.5566 -7.2416 1.2430 42 1 -0.3290 -6.0928 2.2885 43 1 -2.1548 -7.2233 1.5410 44 1 -1.9642 -6.1635 0.1280 45 1 -2.1200 -8.3102 -0.8588 46 1 -1.1729 -9.0775 0.4367 47 1 -0.0036 -8.7277 -1.8477 48 1 0.8748 -8.2584 -0.3939 49 1 -1.0444 -3.2860 -2.3083 50 1 1.2584 -4.8380 -1.4104 51 1 1.9621 -6.1620 -0.4428 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034487973.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:59 Heat of formation + Delta-G solvation = 48.645753 kcal Electronic energy + Delta-G solvation = -31614.845767 eV Core-core repulsion = 27744.053228 eV Total energy + Delta-G solvation = -3870.792539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.41670 -40.44249 -38.77851 -37.56330 -35.49167 -34.64902 -32.59498 -32.08218 -31.84059 -30.28708 -28.04726 -27.98114 -27.78031 -25.75578 -24.89012 -23.65693 -23.41609 -21.58982 -20.91929 -20.26576 -19.28144 -19.05152 -18.42655 -17.10026 -16.72367 -16.55277 -16.10464 -15.91472 -15.82315 -15.51273 -15.31315 -14.96895 -14.95061 -14.88407 -14.23690 -14.00605 -13.82357 -13.56270 -13.37128 -13.16442 -13.02132 -12.95661 -12.86431 -12.60105 -12.37796 -12.30660 -12.21496 -12.02494 -11.96434 -11.87848 -11.78915 -11.51433 -11.30589 -11.14324 -11.06566 -10.97977 -10.40954 -10.32926 -10.04461 -9.66207 -9.44861 -8.38024 -7.59289 -5.07180 0.75086 1.28716 1.48337 1.52785 1.57031 1.92743 2.61209 2.73448 2.88405 3.48706 3.50532 3.79870 3.89232 4.12127 4.15244 4.16461 4.25609 4.31713 4.38787 4.50572 4.60320 4.68263 4.72752 4.79517 4.84049 4.85364 4.89858 4.96382 4.97148 5.02468 5.02586 5.14149 5.16383 5.17539 5.23762 5.37189 5.45942 5.53258 5.55089 5.55854 5.63216 5.67271 5.75592 5.85296 5.88320 6.16462 6.19802 6.40181 6.61887 6.65525 7.17894 7.37621 7.98553 8.07374 8.59575 9.37714 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004909 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.329606 B = 5702.661235 C = 7458.726604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 C -0.127 4.127 4 C -0.140 4.140 5 C 0.130 3.870 6 N -0.320 5.320 7 N -0.450 5.450 8 H 0.459 0.541 9 C 0.125 3.875 10 C -0.307 4.307 11 C 0.558 3.442 12 O -0.513 6.513 13 N -0.721 5.721 14 C 0.139 3.861 15 H 0.092 0.908 16 C -0.108 4.108 17 C -0.101 4.101 18 C -0.136 4.136 19 C 0.153 3.847 20 N -0.594 5.594 21 C -0.294 4.294 22 H 0.048 0.952 23 C -0.017 4.017 24 N -0.850 5.850 25 Si 0.931 3.069 26 H -0.284 1.284 27 H -0.300 1.300 28 H -0.291 1.291 29 C 0.172 3.828 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.230 0.770 40 H 0.398 0.602 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.062 0.938 44 H 0.030 0.970 45 H 0.030 0.970 46 H 0.077 0.923 47 H 0.020 0.980 48 H 0.046 0.954 49 H 0.249 0.751 50 H 0.043 0.957 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.561 2.788 16.250 18.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.018 3.982 3 C -0.184 4.184 4 C -0.198 4.198 5 C -0.037 4.037 6 N -0.143 5.143 7 N -0.156 5.156 8 H 0.307 0.693 9 C -0.029 4.029 10 C -0.322 4.322 11 C 0.345 3.655 12 O -0.389 6.389 13 N -0.374 5.374 14 C 0.034 3.966 15 H 0.110 0.890 16 C -0.146 4.146 17 C -0.139 4.139 18 C -0.177 4.177 19 C 0.025 3.975 20 N -0.316 5.316 21 C -0.425 4.425 22 H 0.066 0.934 23 C -0.220 4.220 24 N -0.489 5.489 25 Si 0.761 3.239 26 H -0.210 1.210 27 H -0.227 1.227 28 H -0.218 1.218 29 C 0.047 3.953 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.247 0.753 40 H 0.233 0.767 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.049 0.951 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.038 0.962 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 7.675 4.305 15.933 18.202 hybrid contribution -0.276 -0.309 -1.037 1.116 sum 7.399 3.996 14.896 17.106 Atomic orbital electron populations 1.21939 0.93399 1.03370 1.00716 1.18870 0.95650 0.94505 0.89165 1.21747 1.00835 0.93845 1.01980 1.21983 0.99049 1.03005 0.95764 1.22395 0.94122 0.92160 0.95042 1.77037 1.22302 1.13901 1.01012 1.46078 1.42031 1.06856 1.20684 0.69291 1.23662 0.91753 0.93234 0.94226 1.20561 1.14924 0.95796 1.00946 1.17698 0.80868 0.82251 0.84697 1.90845 1.44310 1.78108 1.25675 1.46060 1.53914 1.07799 1.29640 1.20688 0.97092 0.88649 0.90161 0.89040 1.21240 0.97781 0.97349 0.98218 1.21225 0.97215 0.97675 0.97771 1.22818 0.99467 0.97429 0.97948 1.20532 0.95123 0.86943 0.94907 1.44044 1.58952 1.11093 1.17557 1.18926 1.40093 0.93051 0.90388 0.93429 1.25484 0.99609 0.98371 0.98499 1.69908 1.45927 1.03801 1.29286 0.85961 0.77246 0.76489 0.84194 1.21029 1.22711 1.21770 1.20192 0.90811 0.91961 0.92353 0.93296 0.93078 0.91104 0.92659 0.91762 0.92312 0.91209 0.93243 0.93680 0.75341 0.76652 0.90785 0.89892 0.91948 0.95137 0.95105 0.90455 0.96152 0.93524 0.94071 0.93870 0.96621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.20 71.98 0.59 -4.08 16 2 C 0.02 0.65 0.75 -52.93 -0.04 0.61 16 3 C -0.13 -3.39 7.92 71.98 0.57 -2.82 16 4 C -0.14 -5.05 8.19 71.98 0.59 -4.46 16 5 C 0.13 3.98 5.64 43.51 0.25 4.23 16 6 N -0.32 -8.47 11.93 -46.68 -0.56 -9.02 16 7 N -0.45 -7.69 7.29 -56.32 -0.41 -8.10 16 8 H 0.46 3.84 8.96 -213.43 -1.91 1.93 16 9 C 0.12 2.19 11.52 84.28 0.97 3.16 16 10 C -0.31 -8.85 5.87 -20.15 -0.12 -8.96 16 11 C 0.56 19.99 6.96 86.66 0.60 20.60 16 12 O -0.51 -22.95 7.89 -4.07 -0.03 -22.99 16 13 N -0.72 -22.51 4.92 -456.59 -2.25 -24.76 16 14 C 0.14 5.39 1.83 42.75 0.08 5.47 16 15 H 0.09 4.56 4.37 -2.39 -0.01 4.55 16 16 C -0.11 -3.31 5.22 29.51 0.15 -3.16 16 17 C -0.10 -3.53 5.67 30.34 0.17 -3.36 16 18 C -0.14 -4.78 6.41 31.91 0.20 -4.57 16 19 C 0.15 6.12 5.17 87.59 0.45 6.58 16 20 N -0.59 -28.83 2.58 -707.84 -1.82 -30.66 16 21 C -0.29 -16.32 9.55 84.03 0.80 -15.52 16 22 H 0.05 2.70 7.91 -2.91 -0.02 2.68 16 23 C -0.02 -0.98 4.82 84.86 0.41 -0.57 16 24 N -0.85 -48.34 8.05 21.65 0.17 -48.17 16 25 Si 0.93 46.87 29.60 68.60 2.03 48.90 16 26 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 C 0.17 7.77 4.60 83.58 0.38 8.16 16 30 H 0.05 1.49 8.11 -2.38 -0.02 1.47 16 31 H 0.05 1.74 8.02 -2.39 -0.02 1.72 16 32 H 0.07 2.87 4.84 -2.39 -0.01 2.86 16 33 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 3.00 4.58 -2.39 -0.01 2.99 16 37 H 0.05 1.77 8.02 -2.39 -0.02 1.75 16 38 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 39 H 0.23 1.56 7.48 -2.91 -0.02 1.53 16 40 H 0.40 8.55 7.49 -92.71 -0.69 7.85 16 41 H 0.07 2.09 6.29 -2.39 -0.02 2.07 16 42 H 0.08 2.04 8.01 -2.39 -0.02 2.02 16 43 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.03 1.36 6.83 -2.39 -0.02 1.35 16 45 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.02 0.84 8.00 -2.38 -0.02 0.82 16 48 H 0.05 1.64 6.89 -2.39 -0.02 1.62 16 49 H 0.25 14.70 8.18 -92.71 -0.76 13.95 16 50 H 0.04 2.34 5.94 -2.39 -0.01 2.33 16 51 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 Total: -1.00 -71.88 376.92 1.57 -70.31 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -1.64 Total: 23.19 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 6.07 Total: 1.29 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -4.86 Total: -120.71 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.03 Total: -22.99 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -71.88 1.57 -70.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034487973.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.959 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds