Wall clock time and date at job start Tue Mar 31 2020 19:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.50696 * 109.46930 * 120.00028 * 2 1 3 5 5 N 1.30453 * 125.99223 * 300.02452 * 4 2 1 6 6 N 1.39933 * 108.90136 * 179.97438 * 5 4 2 7 7 C 1.46488 * 125.75552 * 179.97438 * 6 5 4 8 8 C 1.34263 * 108.48827 * 0.22331 * 6 5 4 9 9 C 1.38045 * 107.41721 * 359.64281 * 8 6 5 10 10 C 1.47431 * 126.41102 * 180.09825 * 9 8 6 11 11 O 1.21610 * 119.99651 * 180.29843 * 10 9 8 12 12 N 1.34772 * 120.00533 * 0.30622 * 10 9 8 13 13 C 1.46491 * 120.00559 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.35636 * 325.00294 * 13 12 10 15 15 C 1.54836 * 109.36323 * 205.27354 * 13 12 10 16 16 C 1.50129 * 110.81924 * 200.92779 * 15 13 12 17 17 C 1.52528 * 105.41376 * 97.68039 * 16 15 13 18 18 C 1.46234 * 114.27776 * 270.59370 * 17 16 15 19 19 N 1.50166 * 107.53242 * 58.40977 * 18 17 16 20 20 C 1.36940 * 120.53351 * 109.61408 * 19 18 17 21 21 H 1.08002 * 119.99717 * 156.70867 * 20 19 18 22 22 C 1.38807 * 120.00200 * 336.70260 * 20 19 18 23 23 N 1.31620 * 120.00095 * 340.42906 * 22 20 19 24 24 Si 1.86803 * 120.00077 * 160.42434 * 22 20 19 25 25 H 1.48498 * 109.47168 * 90.00250 * 24 22 20 26 26 H 1.48497 * 109.47391 * 210.00479 * 24 22 20 27 27 H 1.48505 * 109.46865 * 330.00499 * 24 22 20 28 28 C 1.43127 * 118.90431 * 289.65919 * 19 18 17 29 29 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47025 * 300.00335 * 1 2 3 31 31 H 1.09001 * 109.46942 * 59.99512 * 1 2 3 32 32 H 1.08999 * 109.46662 * 240.00289 * 2 1 3 33 33 H 1.08995 * 109.46929 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47299 * 299.99698 * 3 2 1 35 35 H 1.08996 * 109.47244 * 60.00099 * 3 2 1 36 36 H 1.09004 * 109.47440 * 90.02238 * 7 6 5 37 37 H 1.09000 * 109.47345 * 330.02214 * 7 6 5 38 38 H 1.08999 * 109.47340 * 210.02478 * 7 6 5 39 39 H 1.07993 * 126.28832 * 179.74686 * 8 6 5 40 40 H 0.97001 * 119.99170 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.20691 * 321.27431 * 15 13 12 42 42 H 1.09001 * 109.20961 * 80.62607 * 15 13 12 43 43 H 1.09000 * 110.25129 * 216.65646 * 16 15 13 44 44 H 1.09005 * 110.24586 * 338.70597 * 16 15 13 45 45 H 1.08996 * 108.51977 * 31.83646 * 17 16 15 46 46 H 1.09004 * 108.51823 * 149.50803 * 17 16 15 47 47 H 1.09002 * 109.84523 * 177.92080 * 18 17 16 48 48 H 1.08997 * 109.84884 * 298.90236 * 18 17 16 49 49 H 0.97000 * 119.99991 * 179.97438 * 23 22 20 50 50 H 1.09003 * 108.12488 * 329.75356 * 28 19 18 51 51 H 1.09002 * 107.99726 * 213.29195 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7899 -0.3684 2.4658 6 7 2.4293 -1.2733 3.3205 7 6 2.4013 -1.2339 4.7845 8 6 3.0771 -2.1806 2.5723 9 6 2.8478 -1.8641 1.2483 10 6 3.3627 -2.5902 0.0731 11 8 3.0908 -2.2038 -1.0475 12 7 4.1344 -3.6823 0.2405 13 6 4.6456 -4.4042 -0.9273 14 1 3.9026 -4.3740 -1.7243 15 6 4.9228 -5.8773 -0.5394 16 6 5.8891 -6.5090 -1.4990 17 6 7.2521 -6.4184 -0.8205 18 6 7.9899 -5.1906 -1.1150 19 7 7.1377 -4.0345 -0.6765 20 6 7.4896 -3.2851 0.4142 21 1 7.1268 -2.2727 0.5136 22 6 8.3126 -3.8266 1.3921 23 7 8.4446 -5.1323 1.4921 24 14 9.2327 -2.7021 2.5662 25 1 8.3946 -2.4456 3.7649 26 1 10.5028 -3.3510 2.9799 27 1 9.5322 -1.4159 1.8871 28 6 5.9513 -3.7297 -1.4168 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.5553 -1.8175 5.1477 37 1 2.3003 -0.2013 5.1184 38 1 3.3275 -1.6537 5.1771 39 1 3.6676 -3.0072 2.9389 40 1 4.3515 -3.9903 1.1343 41 1 5.3424 -5.9104 0.4661 42 1 3.9862 -6.4347 -0.5554 43 1 5.6221 -7.5516 -1.6717 44 1 5.8990 -5.9599 -2.4406 45 1 7.1072 -6.4851 0.2577 46 1 7.8555 -7.2677 -1.1409 47 1 8.9321 -5.1846 -0.5670 48 1 8.1831 -5.1227 -2.1855 49 1 9.0200 -5.5107 2.1753 50 1 6.1152 -4.0200 -2.4546 51 1 5.8062 -2.6497 -1.3908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034529217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:22 Heat of formation + Delta-G solvation = 38.849070 kcal Electronic energy + Delta-G solvation = -30758.515182 eV Core-core repulsion = 26887.297827 eV Total energy + Delta-G solvation = -3871.217355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.44569 -40.48115 -39.04683 -36.78686 -35.68315 -34.70389 -33.42847 -32.85382 -32.01070 -30.61720 -28.02931 -28.01774 -27.71643 -25.75808 -24.80280 -23.75199 -23.15419 -21.70503 -20.86733 -20.75778 -19.95749 -18.56331 -18.49508 -17.12405 -16.84361 -16.70886 -16.56132 -16.09471 -15.75565 -15.59797 -15.51756 -15.28880 -14.90728 -14.81039 -14.26262 -14.06523 -13.99434 -13.78592 -13.52450 -13.36540 -13.31984 -13.19656 -13.13800 -12.95215 -12.62348 -12.38568 -12.35769 -12.31018 -12.10582 -11.95201 -11.84497 -11.72123 -11.70667 -11.24965 -11.09296 -10.88068 -10.55955 -10.40735 -10.34237 -9.94259 -9.54987 -8.53582 -7.76589 -5.15301 0.55336 1.15537 1.43992 1.47134 1.51132 1.58052 2.47494 2.56202 2.62468 3.35684 3.37369 3.66027 3.67401 3.95542 4.02806 4.11408 4.23048 4.27620 4.29127 4.40556 4.44197 4.49483 4.59069 4.63269 4.63576 4.66945 4.70871 4.77536 4.79554 4.90862 4.94425 4.96457 4.98016 5.10968 5.12946 5.28428 5.33138 5.34590 5.37380 5.41312 5.52203 5.60778 5.65180 5.73627 5.83936 5.84943 5.93397 6.27031 6.47587 6.56345 6.84907 7.24990 7.49015 7.97393 8.47886 9.26878 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.004294 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.825350 B = 6519.406886 C = 7751.705680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.035 4.035 3 C -0.131 4.131 4 C 0.127 3.873 5 N -0.316 5.316 6 N -0.360 5.360 7 C 0.087 3.913 8 C 0.113 3.887 9 C -0.315 4.315 10 C 0.589 3.411 11 O -0.587 6.587 12 N -0.697 5.697 13 C 0.128 3.872 14 H 0.074 0.926 15 C -0.098 4.098 16 C -0.105 4.105 17 C -0.121 4.121 18 C 0.166 3.834 19 N -0.591 5.591 20 C -0.241 4.241 21 H 0.045 0.955 22 C -0.028 4.028 23 N -0.908 5.908 24 Si 0.942 3.058 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.292 1.292 28 C 0.156 3.844 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.112 0.888 39 H 0.208 0.792 40 H 0.400 0.600 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.034 0.966 47 H 0.058 0.942 48 H 0.016 0.984 49 H 0.247 0.753 50 H 0.044 0.956 51 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.938 2.222 3.689 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.055 4.055 3 C -0.189 4.189 4 C -0.040 4.040 5 N -0.138 5.138 6 N -0.137 5.137 7 C -0.052 4.052 8 C -0.040 4.040 9 C -0.330 4.330 10 C 0.378 3.622 11 O -0.469 6.469 12 N -0.344 5.344 13 C 0.020 3.980 14 H 0.092 0.908 15 C -0.136 4.136 16 C -0.143 4.143 17 C -0.160 4.160 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.371 4.371 21 H 0.062 0.938 22 C -0.225 4.225 23 N -0.554 5.554 24 Si 0.772 3.228 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.218 1.218 28 C 0.026 3.974 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.224 0.776 40 H 0.235 0.765 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.053 0.947 47 H 0.077 0.923 48 H 0.034 0.966 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -13.586 3.238 3.995 14.526 hybrid contribution 1.501 -0.192 0.791 1.708 sum -12.084 3.046 4.786 13.350 Atomic orbital electron populations 1.21695 0.92497 1.01593 1.02806 1.19969 0.97072 0.95925 0.92528 1.21713 1.00078 0.94274 1.02856 1.22567 0.94385 0.93156 0.93926 1.77008 1.21518 1.15125 1.00121 1.48663 1.36670 1.19980 1.08411 1.22378 1.05833 1.06021 0.70944 1.23461 0.95027 0.95103 0.90369 1.20369 1.14672 1.04693 0.93274 1.17462 0.77370 0.79729 0.87628 1.90611 1.61981 1.68014 1.26326 1.45756 1.50145 1.28202 1.10346 1.22549 0.95894 0.91995 0.87578 0.90800 1.21544 0.99058 0.92953 1.00093 1.20944 0.95162 1.00164 0.97986 1.20818 0.95694 0.97006 1.02457 1.20118 0.95111 0.86542 0.93908 1.44190 1.20881 1.35009 1.31177 1.19061 1.26783 0.93280 0.98015 0.93764 1.25225 1.02849 0.96120 0.98280 1.70084 1.40670 1.09441 1.35219 0.85694 0.78691 0.78742 0.79660 1.21078 1.22100 1.21800 1.20703 0.86600 0.95983 0.94108 0.93604 0.92259 0.90255 0.88710 0.94470 0.90139 0.92187 0.88325 0.88379 0.86920 0.77556 0.76480 0.92486 0.91847 0.90564 0.92110 0.90775 0.94736 0.92332 0.96588 0.94317 0.93825 0.97307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.18 71.98 0.66 -2.40 16 2 C -0.03 -1.02 3.26 -11.54 -0.04 -1.06 16 3 C -0.13 -3.42 9.18 71.98 0.66 -2.76 16 4 C 0.13 4.10 5.77 43.51 0.25 4.36 16 5 N -0.32 -9.44 12.50 -46.68 -0.58 -10.02 16 6 N -0.36 -8.83 3.98 -367.81 -1.46 -10.30 16 7 C 0.09 1.19 11.44 127.77 1.46 2.65 16 8 C 0.11 3.02 10.99 84.28 0.93 3.95 16 9 C -0.32 -10.55 6.13 -20.15 -0.12 -10.67 16 10 C 0.59 22.32 7.66 86.67 0.66 22.98 16 11 O -0.59 -25.18 14.22 -4.06 -0.06 -25.24 16 12 N -0.70 -24.93 5.07 -439.77 -2.23 -27.16 16 13 C 0.13 4.68 2.92 46.27 0.14 4.82 16 14 H 0.07 2.72 7.57 -2.39 -0.02 2.70 16 15 C -0.10 -3.28 5.23 30.30 0.16 -3.12 16 16 C -0.10 -3.40 5.76 29.51 0.17 -3.23 16 17 C -0.12 -4.76 5.02 28.35 0.14 -4.62 16 18 C 0.17 7.42 5.24 83.58 0.44 7.86 16 19 N -0.59 -27.73 2.60 -708.56 -1.84 -29.57 16 20 C -0.24 -12.43 9.62 84.03 0.81 -11.62 16 21 H 0.04 2.42 7.88 -2.91 -0.02 2.40 16 22 C -0.03 -1.44 4.91 84.86 0.42 -1.03 16 23 N -0.91 -46.88 9.43 21.65 0.20 -46.68 16 24 Si 0.94 42.58 29.60 68.60 2.03 44.61 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 28 C 0.16 6.62 4.76 87.65 0.42 7.03 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 3.28 5.60 -2.39 -0.01 3.27 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.21 4.28 7.46 -2.91 -0.02 4.26 16 40 H 0.40 13.45 7.37 -92.71 -0.68 12.77 16 41 H 0.06 2.19 6.59 -2.39 -0.02 2.18 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 1.96 6.28 -2.38 -0.01 1.95 16 45 H 0.07 3.37 5.29 -2.39 -0.01 3.35 16 46 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 47 H 0.06 2.97 6.05 -2.39 -0.01 2.95 16 48 H 0.02 0.67 8.12 -2.39 -0.02 0.65 16 49 H 0.25 12.63 8.31 -92.71 -0.77 11.86 16 50 H 0.04 1.75 6.88 -2.39 -0.02 1.73 16 51 H 0.01 0.42 7.83 -2.39 -0.02 0.40 16 Total: -1.00 -64.93 394.73 3.45 -61.48 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 0.25 Total: 29.74 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 7.15 Total: 13.13 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -5.92 Total: -123.72 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.24 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -64.93 3.45 -61.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034529217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.331 kcal (2) G-P(sol) polarization free energy of solvation -64.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds