Wall clock time and date at job start Tue Mar 31 2020 20:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47171 * 2 1 4 4 C 1.53001 * 109.47512 * 120.00365 * 2 1 3 5 5 C 1.50701 * 109.47017 * 64.99848 * 4 2 1 6 6 N 1.30857 * 125.41937 * 304.97655 * 5 4 2 7 7 C 1.33316 * 109.68396 * 180.02562 * 6 5 4 8 8 C 1.36659 * 107.78966 * 0.02562 * 7 6 5 9 9 C 1.46756 * 126.84812 * 180.02562 * 8 7 6 10 10 O 1.21685 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00231 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00088 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46872 * 324.99405 * 12 11 9 14 14 C 1.52997 * 109.47277 * 84.99368 * 12 11 9 15 15 C 1.52996 * 109.47165 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46972 * 300.00293 * 15 14 12 17 17 H 1.09000 * 109.46986 * 299.99742 * 16 15 14 18 18 N 1.46496 * 109.47428 * 180.02562 * 16 15 14 19 19 C 1.36941 * 120.00340 * 84.99574 * 18 16 15 20 20 H 1.08004 * 119.99649 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99905 * 180.02562 * 19 18 16 22 22 N 1.31613 * 119.99986 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99685 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47491 * 119.99499 * 23 21 19 26 26 H 1.48502 * 109.47083 * 239.99522 * 23 21 19 27 27 C 1.52997 * 109.47415 * 59.99860 * 16 15 14 28 28 C 1.52999 * 109.46691 * 204.99775 * 12 11 9 29 29 N 1.34492 * 125.41718 * 125.30034 * 5 4 2 30 30 H 0.97003 * 126.47258 * 0.02562 * 29 5 4 31 31 H 1.09001 * 109.47229 * 59.99958 * 1 2 3 32 32 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47029 * 299.99379 * 1 2 3 34 34 H 1.09003 * 109.47122 * 240.00157 * 2 1 3 35 35 H 1.08997 * 109.47746 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47399 * 300.00431 * 3 2 1 37 37 H 1.09003 * 109.46969 * 60.00063 * 3 2 1 38 38 H 1.09005 * 109.46582 * 304.99934 * 4 2 1 39 39 H 1.08996 * 109.47296 * 185.00519 * 4 2 1 40 40 H 1.08006 * 126.10375 * 180.02562 * 7 6 5 41 41 H 0.97000 * 119.99750 * 359.97438 * 11 9 8 42 42 H 1.09000 * 109.47140 * 60.00200 * 14 12 11 43 43 H 1.09001 * 109.47375 * 300.00183 * 14 12 11 44 44 H 1.08992 * 109.47534 * 180.02562 * 15 14 12 45 45 H 1.08996 * 109.47134 * 59.99508 * 15 14 12 46 46 H 0.97005 * 119.99981 * 264.99973 * 18 16 15 47 47 H 0.97000 * 119.99516 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.46922 * 180.02562 * 27 16 15 49 49 H 1.09000 * 109.47140 * 59.99976 * 27 16 15 50 50 H 1.08993 * 109.47839 * 59.99891 * 28 12 11 51 51 H 1.09000 * 109.47160 * 299.99453 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1887 6 7 0.4208 -2.6189 1.0336 7 6 0.4271 -3.9520 1.0250 8 6 1.7202 -4.3645 1.1837 9 6 2.2023 -5.7497 1.2337 10 8 1.4155 -6.6719 1.1278 11 7 3.5165 -6.0005 1.3967 12 6 3.9978 -7.3833 1.4460 13 1 3.2556 -8.0089 1.9419 14 6 4.2266 -7.8948 0.0224 15 6 4.7286 -9.3392 0.0739 16 6 6.0441 -9.3944 0.8533 17 1 6.7866 -8.7691 0.3575 18 7 6.5252 -10.7772 0.9021 19 6 7.2688 -11.2805 -0.1318 20 1 7.5009 -10.6577 -0.9832 21 6 7.7241 -12.5910 -0.0857 22 7 7.4416 -13.3497 0.9520 23 14 8.7391 -13.2772 -1.4958 24 1 8.9163 -12.2299 -2.5337 25 1 10.0685 -13.7016 -0.9882 26 1 8.0388 -14.4457 -2.0869 27 6 5.8153 -8.8829 2.2770 28 6 5.3134 -7.4379 2.2253 29 7 2.4827 -3.2176 1.2918 30 1 3.4436 -3.1737 1.4173 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.6054 -0.2618 2.1369 39 1 3.1264 -0.6443 1.2951 40 1 -0.4358 -4.5918 0.9126 41 1 4.1437 -5.2653 1.4807 42 1 4.9688 -7.2693 -0.4735 43 1 3.2894 -7.8559 -0.5328 44 1 4.8921 -9.7034 -0.9403 45 1 3.9862 -9.9644 0.5697 46 1 6.3169 -11.3364 1.6669 47 1 7.7602 -14.2653 0.9843 48 1 6.7526 -8.9218 2.8320 49 1 5.0727 -9.5082 2.7727 50 1 5.1504 -7.0736 3.2395 51 1 6.0556 -6.8124 1.7294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034645789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:10 Heat of formation + Delta-G solvation = 1.422852 kcal Electronic energy + Delta-G solvation = -28281.194486 eV Core-core repulsion = 24408.354208 eV Total energy + Delta-G solvation = -3872.840278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.63216 -39.87251 -37.95297 -36.76471 -35.00291 -33.46844 -32.76221 -31.15556 -30.49740 -30.42281 -27.85054 -27.44307 -26.90594 -23.98046 -23.02496 -22.36549 -21.62174 -21.15179 -20.68410 -20.30770 -19.62116 -18.71506 -17.06884 -16.44533 -16.29463 -16.03999 -15.55678 -15.15914 -14.81531 -14.48713 -14.41278 -14.18712 -13.93457 -13.80965 -13.65567 -13.56357 -13.06653 -12.95971 -12.67724 -12.60982 -12.32371 -12.09170 -11.86920 -11.64991 -11.50398 -11.29296 -11.14685 -11.11107 -10.85904 -10.82126 -10.72752 -10.56485 -10.39728 -10.19541 -10.15133 -10.03929 -9.80569 -9.61855 -9.16959 -8.87981 -8.78133 -6.95590 -5.76976 -3.05524 0.98709 2.41473 2.48096 2.91668 3.13833 3.42456 3.48080 3.50311 3.85525 4.27271 4.40345 4.48539 4.58141 4.65148 4.79512 4.93271 4.96314 4.97758 5.09326 5.19036 5.21057 5.25701 5.34490 5.42821 5.48716 5.54135 5.55078 5.62521 5.62947 5.66274 5.76072 5.78485 5.82115 5.93320 5.97511 6.11323 6.16469 6.17785 6.24351 6.36779 6.42276 6.51518 6.59197 6.68629 6.79251 6.95559 7.12248 7.23167 7.57320 7.70081 7.96308 8.41839 9.52920 10.11295 10.45715 11.45808 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.001810 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.115471 B =15467.446067 C =15786.450745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.035 4.035 5 C 0.241 3.759 6 N -0.487 5.487 7 C 0.069 3.931 8 C -0.088 4.088 9 C 0.593 3.407 10 O -0.521 6.521 11 N -0.724 5.724 12 C 0.146 3.854 13 H 0.091 0.909 14 C -0.124 4.124 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.045 0.955 18 N -0.725 5.725 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.120 4.120 28 C -0.118 4.118 29 N -0.552 5.552 30 H 0.420 0.580 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.184 0.816 41 H 0.390 0.610 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 30.041 2.583 31.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.106 4.106 3 C -0.206 4.206 4 C -0.074 4.074 5 C -0.022 4.022 6 N -0.206 5.206 7 C -0.084 4.084 8 C -0.203 4.203 9 C 0.379 3.621 10 O -0.396 6.396 11 N -0.374 5.374 12 C 0.043 3.957 13 H 0.109 0.891 14 C -0.163 4.163 15 C -0.173 4.173 16 C 0.067 3.933 17 H 0.063 0.937 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.159 4.159 28 C -0.157 4.157 29 N -0.157 5.157 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.201 0.799 41 H 0.223 0.777 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.217 0.783 47 H 0.064 0.936 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.213 29.741 2.281 31.867 hybrid contribution 2.033 -0.816 -0.381 2.224 sum -9.180 28.925 1.900 30.407 Atomic orbital electron populations 1.22083 0.93836 1.04878 1.00865 1.20997 0.97548 0.95530 0.96477 1.21859 1.00772 0.95647 1.02279 1.20269 1.01122 0.85200 1.00839 1.23414 0.85745 0.91567 1.01502 1.70135 1.19560 1.10094 1.20847 1.22723 0.95144 0.91065 0.99511 1.21253 0.93477 0.86734 1.18851 1.16859 0.82505 0.85978 0.76803 1.90884 1.55053 1.43895 1.49770 1.46083 1.07225 1.09628 1.74462 1.21183 0.96390 0.80742 0.97412 0.89063 1.21901 1.00880 0.98235 0.95276 1.22230 0.99555 0.93347 1.02204 1.20234 0.92977 0.87797 0.92267 0.93662 1.42431 1.62575 1.08236 1.23314 1.19285 1.24389 0.95143 0.98037 0.91186 1.24741 1.01574 0.96762 0.97967 1.69669 1.50637 1.08015 1.29777 0.86143 0.79738 0.78841 0.81623 1.20606 1.21914 1.21886 1.21764 1.01223 0.93735 0.99207 1.21763 0.95519 0.98980 0.99447 1.43266 1.10906 1.06144 1.55362 0.74147 0.93473 0.88985 0.93028 0.91203 0.92746 0.92258 0.92403 0.88658 0.90133 0.79887 0.77696 0.92392 0.92222 0.91707 0.92368 0.78290 0.93585 0.91298 0.91840 0.91891 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.92 37.16 0.33 -0.74 16 2 C -0.09 -0.46 2.91 -90.62 -0.26 -0.72 16 3 C -0.15 -0.59 9.19 37.16 0.34 -0.25 16 4 C -0.04 -0.17 5.32 -27.88 -0.15 -0.31 16 5 C 0.24 1.85 7.36 -155.62 -1.15 0.70 16 6 N -0.49 -4.91 8.51 -10.58 -0.09 -5.00 16 7 C 0.07 0.75 11.66 -17.48 -0.20 0.55 16 8 C -0.09 -0.89 7.07 -82.15 -0.58 -1.48 16 9 C 0.59 7.29 7.75 -12.82 -0.10 7.19 16 10 O -0.52 -8.49 16.57 5.20 0.09 -8.41 16 11 N -0.72 -7.35 5.07 -55.09 -0.28 -7.63 16 12 C 0.15 1.84 2.45 -67.93 -0.17 1.67 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 14 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 15 C -0.13 -2.36 5.50 -26.73 -0.15 -2.51 16 16 C 0.18 3.38 2.77 -67.93 -0.19 3.19 16 17 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 18 N -0.73 -17.91 5.12 -53.43 -0.27 -18.18 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C -0.12 -1.86 5.39 -26.70 -0.14 -2.00 16 28 C -0.12 -1.37 5.40 -26.70 -0.14 -1.52 16 29 N -0.55 -3.80 6.07 -7.02 -0.04 -3.84 16 30 H 0.42 1.51 8.32 -40.82 -0.34 1.17 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.81 5.49 -51.93 -0.29 0.52 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.18 1.87 8.06 -52.48 -0.42 1.44 16 41 H 0.39 2.67 7.85 -40.82 -0.32 2.35 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 50 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 407.47 15.07 6.14 6.14 Total: -1.00 -33.60 407.47 -10.52 -44.12 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.81 Total: 8.22 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.95 Total: -5.35 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.04 Total: -62.08 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.60 -10.52 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034645789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.539 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds