Wall clock time and date at job start Tue Mar 31 2020 20:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47171 * 2 1 4 4 C 1.53001 * 109.47512 * 120.00365 * 2 1 3 5 5 C 1.50701 * 109.47017 * 64.99848 * 4 2 1 6 6 N 1.30857 * 125.41937 * 304.97655 * 5 4 2 7 7 C 1.33316 * 109.68396 * 180.02562 * 6 5 4 8 8 C 1.36659 * 107.78966 * 0.02562 * 7 6 5 9 9 C 1.46756 * 126.84812 * 180.02562 * 8 7 6 10 10 O 1.21685 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00231 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00088 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46872 * 324.99405 * 12 11 9 14 14 C 1.52997 * 109.47277 * 84.99368 * 12 11 9 15 15 C 1.52996 * 109.47165 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.46972 * 300.00293 * 15 14 12 17 17 H 1.09000 * 109.46986 * 299.99742 * 16 15 14 18 18 N 1.46496 * 109.47428 * 180.02562 * 16 15 14 19 19 C 1.36941 * 120.00340 * 84.99574 * 18 16 15 20 20 H 1.08004 * 119.99649 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99905 * 180.02562 * 19 18 16 22 22 N 1.31613 * 119.99986 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99685 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47350 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47491 * 119.99499 * 23 21 19 26 26 H 1.48502 * 109.47083 * 239.99522 * 23 21 19 27 27 C 1.52997 * 109.47415 * 59.99860 * 16 15 14 28 28 C 1.52999 * 109.46691 * 204.99775 * 12 11 9 29 29 N 1.34492 * 125.41718 * 125.30034 * 5 4 2 30 30 H 0.97003 * 126.47258 * 0.02562 * 29 5 4 31 31 H 1.09001 * 109.47229 * 59.99958 * 1 2 3 32 32 H 1.09000 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47029 * 299.99379 * 1 2 3 34 34 H 1.09003 * 109.47122 * 240.00157 * 2 1 3 35 35 H 1.08997 * 109.47746 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47399 * 300.00431 * 3 2 1 37 37 H 1.09003 * 109.46969 * 60.00063 * 3 2 1 38 38 H 1.09005 * 109.46582 * 304.99934 * 4 2 1 39 39 H 1.08996 * 109.47296 * 185.00519 * 4 2 1 40 40 H 1.08006 * 126.10375 * 180.02562 * 7 6 5 41 41 H 0.97000 * 119.99750 * 359.97438 * 11 9 8 42 42 H 1.09000 * 109.47140 * 60.00200 * 14 12 11 43 43 H 1.09001 * 109.47375 * 300.00183 * 14 12 11 44 44 H 1.08992 * 109.47534 * 180.02562 * 15 14 12 45 45 H 1.08996 * 109.47134 * 59.99508 * 15 14 12 46 46 H 0.97005 * 119.99981 * 264.99973 * 18 16 15 47 47 H 0.97000 * 119.99516 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.46922 * 180.02562 * 27 16 15 49 49 H 1.09000 * 109.47140 * 59.99976 * 27 16 15 50 50 H 1.08993 * 109.47839 * 59.99891 * 28 12 11 51 51 H 1.09000 * 109.47160 * 299.99453 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 -2.1734 1.1887 6 7 0.4208 -2.6189 1.0336 7 6 0.4271 -3.9520 1.0250 8 6 1.7202 -4.3645 1.1837 9 6 2.2023 -5.7497 1.2337 10 8 1.4155 -6.6719 1.1278 11 7 3.5165 -6.0005 1.3967 12 6 3.9978 -7.3833 1.4460 13 1 3.2556 -8.0089 1.9419 14 6 4.2266 -7.8948 0.0224 15 6 4.7286 -9.3392 0.0739 16 6 6.0441 -9.3944 0.8533 17 1 6.7866 -8.7691 0.3575 18 7 6.5252 -10.7772 0.9021 19 6 7.2688 -11.2805 -0.1318 20 1 7.5009 -10.6577 -0.9832 21 6 7.7241 -12.5910 -0.0857 22 7 7.4416 -13.3497 0.9520 23 14 8.7391 -13.2772 -1.4958 24 1 8.9163 -12.2299 -2.5337 25 1 10.0685 -13.7016 -0.9882 26 1 8.0388 -14.4457 -2.0869 27 6 5.8153 -8.8829 2.2770 28 6 5.3134 -7.4379 2.2253 29 7 2.4827 -3.2176 1.2918 30 1 3.4436 -3.1737 1.4173 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.6054 -0.2618 2.1369 39 1 3.1264 -0.6443 1.2951 40 1 -0.4358 -4.5918 0.9126 41 1 4.1437 -5.2653 1.4807 42 1 4.9688 -7.2693 -0.4735 43 1 3.2894 -7.8559 -0.5328 44 1 4.8921 -9.7034 -0.9403 45 1 3.9862 -9.9644 0.5697 46 1 6.3169 -11.3364 1.6669 47 1 7.7602 -14.2653 0.9843 48 1 6.7526 -8.9218 2.8320 49 1 5.0727 -9.5082 2.7727 50 1 5.1504 -7.0736 3.2395 51 1 6.0556 -6.8124 1.7294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034645789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:08 Heat of formation + Delta-G solvation = -20.363776 kcal Electronic energy + Delta-G solvation = -28282.139225 eV Core-core repulsion = 24408.354208 eV Total energy + Delta-G solvation = -3873.785017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32243 -40.91871 -39.22057 -37.20077 -36.44363 -34.84224 -33.74225 -32.51570 -31.71559 -31.48584 -29.11695 -27.92231 -27.68209 -25.68302 -24.16777 -23.58260 -22.53959 -21.91882 -21.62310 -21.17052 -20.67449 -19.62018 -18.99883 -17.42261 -17.16161 -16.84905 -16.75113 -16.13340 -15.84509 -15.64800 -15.38300 -15.21684 -15.13506 -15.00802 -14.75240 -14.54957 -14.21170 -14.02701 -13.48617 -13.43302 -13.18719 -13.10878 -13.01746 -12.87130 -12.70223 -12.46841 -12.34507 -12.17578 -12.11502 -12.04736 -11.69958 -11.69004 -11.55087 -11.50695 -11.34297 -11.22869 -11.17231 -10.87319 -10.78882 -10.21626 -9.53084 -8.99628 -7.94053 -5.21962 0.20958 1.46206 1.47229 1.56746 1.73286 1.77374 2.05319 2.25742 2.56063 3.30343 3.39084 3.68129 3.76334 3.82420 3.87797 3.94416 4.02339 4.12826 4.26654 4.34656 4.37271 4.37821 4.39422 4.51774 4.57662 4.62481 4.67116 4.75171 4.81343 4.83605 4.92557 4.94497 4.98246 5.07650 5.10950 5.16518 5.21261 5.23548 5.26501 5.36573 5.38369 5.44692 5.50551 5.54084 5.54476 5.63047 5.77193 6.26383 6.28993 6.42232 6.88880 7.06637 7.34439 8.12404 8.34219 9.29806 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.001810 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.115471 B =15467.446067 C =15786.450745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.084 4.084 3 C -0.144 4.144 4 C -0.034 4.034 5 C 0.253 3.747 6 N -0.510 5.510 7 C 0.053 3.947 8 C -0.095 4.095 9 C 0.595 3.405 10 O -0.569 6.569 11 N -0.705 5.705 12 C 0.154 3.846 13 H 0.068 0.932 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.172 3.828 17 H 0.049 0.951 18 N -0.739 5.739 19 C -0.235 4.235 20 H 0.076 0.924 21 C -0.079 4.079 22 N -0.971 5.971 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.297 1.297 27 C -0.114 4.114 28 C -0.104 4.104 29 N -0.534 5.534 30 H 0.438 0.562 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.177 0.823 41 H 0.412 0.588 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.068 0.932 49 H 0.052 0.948 50 H 0.089 0.911 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 33.540 2.681 34.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.103 4.103 3 C -0.202 4.202 4 C -0.073 4.073 5 C -0.011 4.011 6 N -0.230 5.230 7 C -0.101 4.101 8 C -0.212 4.212 9 C 0.382 3.618 10 O -0.447 6.447 11 N -0.356 5.356 12 C 0.049 3.951 13 H 0.086 0.914 14 C -0.151 4.151 15 C -0.164 4.164 16 C 0.064 3.936 17 H 0.067 0.933 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.271 4.271 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.190 1.190 25 H -0.220 1.220 26 H -0.225 1.225 27 C -0.153 4.153 28 C -0.143 4.143 29 N -0.141 5.141 30 H 0.280 0.720 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.194 0.806 41 H 0.248 0.752 42 H 0.095 0.905 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.203 0.797 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.108 0.892 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.587 33.332 2.372 34.764 hybrid contribution 1.461 -1.791 -0.430 2.351 sum -8.126 31.541 1.941 32.629 Atomic orbital electron populations 1.22057 0.95271 1.03402 1.00941 1.20961 0.96289 0.96576 0.96499 1.21820 1.01536 0.94395 1.02400 1.20467 1.03218 0.82820 1.00752 1.24015 0.85126 0.92788 0.99199 1.70175 1.21273 1.09594 1.21992 1.22819 0.95592 0.91721 0.99970 1.20816 0.93635 0.86576 1.20152 1.17071 0.82595 0.86260 0.75880 1.90866 1.56354 1.45501 1.52007 1.45766 1.06987 1.09288 1.73535 1.20910 0.96568 0.81658 0.95948 0.91398 1.21762 1.00565 0.96017 0.96795 1.22034 0.98616 0.95586 1.00211 1.20499 0.92983 0.85144 0.94972 0.93314 1.42682 1.62562 1.10341 1.22254 1.19666 1.23311 0.95234 0.98480 0.90642 1.25539 1.03625 0.97416 1.00512 1.69823 1.52488 1.08039 1.31828 0.85121 0.77843 0.78039 0.79075 1.18982 1.21992 1.22467 1.21650 1.01182 0.96145 0.96281 1.21661 0.94953 0.96474 1.01171 1.43120 1.11701 1.04743 1.54518 0.71977 0.93618 0.91155 0.92785 0.92053 0.91460 0.92655 0.91843 0.87688 0.86891 0.80588 0.75182 0.90456 0.93417 0.94088 0.94237 0.79731 0.94169 0.91292 0.92870 0.89206 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.92 71.98 0.64 -1.34 16 2 C -0.08 -0.70 2.91 -10.80 -0.03 -0.73 16 3 C -0.14 -0.74 9.19 71.98 0.66 -0.08 16 4 C -0.03 -0.20 5.32 29.85 0.16 -0.04 16 5 C 0.25 3.27 7.36 138.20 1.02 4.29 16 6 N -0.51 -9.91 8.51 -187.40 -1.59 -11.50 16 7 C 0.05 1.15 11.66 84.10 0.98 2.13 16 8 C -0.10 -1.83 7.07 40.01 0.28 -1.54 16 9 C 0.59 14.02 7.75 86.47 0.67 14.69 16 10 O -0.57 -18.87 16.57 -4.30 -0.07 -18.94 16 11 N -0.71 -12.49 5.07 -446.42 -2.26 -14.76 16 12 C 0.15 3.59 2.45 44.99 0.11 3.70 16 13 H 0.07 1.97 7.58 -2.39 -0.02 1.96 16 14 C -0.11 -3.10 5.49 30.59 0.17 -2.93 16 15 C -0.12 -4.46 5.50 30.59 0.17 -4.29 16 16 C 0.17 6.48 2.77 44.99 0.12 6.60 16 17 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 18 N -0.74 -37.02 5.12 -322.94 -1.65 -38.67 16 19 C -0.23 -13.00 9.93 84.03 0.83 -12.17 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 22 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 23 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 27 C -0.11 -3.35 5.39 30.61 0.17 -3.19 16 28 C -0.10 -2.07 5.40 30.61 0.17 -1.90 16 29 N -0.53 -5.81 6.07 -176.12 -1.07 -6.88 16 30 H 0.44 1.29 8.32 -92.71 -0.77 0.52 16 31 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 1.22 5.49 -2.39 -0.01 1.21 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.19 8.14 -2.39 -0.02 0.18 16 36 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.11 -0.01 8.14 -2.39 -0.02 -0.02 16 40 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 41 H 0.41 3.89 7.85 -92.71 -0.73 3.16 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.37 20.13 7.80 -92.70 -0.72 19.41 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -75.95 407.47 0.96 -74.99 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: -1.28 Total: 27.86 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.58 Total: -0.90 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -6.30 Total: -131.44 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.07 Total: -18.94 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -75.95 0.96 -74.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034645789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.622 kcal (2) G-P(sol) polarization free energy of solvation -75.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds