Wall clock time and date at job start Tue Mar 31 2020 18:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47194 * 2 1 4 4 C 1.50703 * 109.47005 * 120.00099 * 2 1 3 5 5 C 1.35362 * 126.38274 * 325.31985 * 4 2 1 6 6 C 1.41506 * 105.49903 * 180.10701 * 5 4 2 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 H 1.09007 * 109.46737 * 324.99949 * 10 9 7 12 12 C 1.52998 * 109.47145 * 84.99285 * 10 9 7 13 13 C 1.53009 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46897 * 300.00522 * 13 12 10 15 15 H 1.08998 * 109.46904 * 299.99869 * 14 13 12 16 16 N 1.46504 * 109.46654 * 179.97438 * 14 13 12 17 17 C 1.36937 * 120.00294 * 84.99822 * 16 14 13 18 18 H 1.07998 * 119.99682 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00095 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00368 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47253 * 89.99733 * 21 19 17 23 23 H 1.48499 * 109.47240 * 209.99790 * 21 19 17 24 24 H 1.48496 * 109.47386 * 329.99924 * 21 19 17 25 25 C 1.52998 * 109.47159 * 59.99962 * 14 13 12 26 26 C 1.52995 * 109.47290 * 204.99666 * 10 9 7 27 27 N 1.31810 * 106.96318 * 359.62268 * 6 5 4 28 28 N 1.28463 * 110.07473 * 0.23761 * 27 6 5 29 29 C 1.46505 * 124.88731 * 180.02562 * 28 27 6 30 30 H 1.09001 * 109.47438 * 59.99847 * 1 2 3 31 31 H 1.08997 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47109 * 300.00196 * 1 2 3 33 33 H 1.09004 * 109.47109 * 239.99804 * 2 1 3 34 34 H 1.09001 * 109.47014 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47005 * 299.99834 * 3 2 1 36 36 H 1.09000 * 109.46801 * 59.99708 * 3 2 1 37 37 H 1.07997 * 127.25460 * 359.97221 * 5 4 2 38 38 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 39 39 H 1.09001 * 109.47335 * 300.00029 * 12 10 9 40 40 H 1.08999 * 109.47045 * 60.00647 * 12 10 9 41 41 H 1.08991 * 109.46964 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.46735 * 60.00348 * 13 12 10 43 43 H 0.96996 * 119.99697 * 264.99565 * 16 14 13 44 44 H 0.96999 * 120.00436 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.46820 * 180.02562 * 25 14 13 46 46 H 1.08999 * 109.47409 * 59.99602 * 25 14 13 47 47 H 1.08999 * 109.47294 * 299.99595 * 26 10 9 48 48 H 1.09002 * 109.46851 * 59.99863 * 26 10 9 49 49 H 1.09001 * 109.46959 * 89.97009 * 29 28 27 50 50 H 1.08991 * 109.46948 * 209.97191 * 29 28 27 51 51 H 1.09001 * 109.46403 * 329.97492 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4550 -0.7013 2.4548 6 6 2.2881 -1.5020 3.2717 7 6 2.0877 -1.8027 4.7039 8 8 1.1311 -1.3398 5.2942 9 7 2.9625 -2.5948 5.3549 10 6 2.7605 -2.8981 6.7739 11 1 2.3318 -2.0293 7.2736 12 6 1.8071 -4.0869 6.9106 13 6 1.5957 -4.4032 8.3926 14 6 2.9394 -4.7502 9.0368 15 1 3.3682 -5.6190 8.5374 16 7 2.7369 -5.0524 10.4560 17 6 2.3746 -6.3153 10.8422 18 1 2.2376 -7.0883 10.1005 19 6 2.1833 -6.6017 12.1868 20 7 2.3507 -5.6598 13.0907 21 14 1.6897 -8.3246 12.7137 22 1 2.9092 -9.1322 12.9706 23 1 0.8758 -8.2490 13.9535 24 1 0.8917 -8.9623 11.6359 25 6 3.8927 -3.5613 8.9000 26 6 4.1043 -3.2453 7.4175 27 7 3.2739 -1.9329 2.5101 28 7 3.1389 -1.4796 1.3157 29 6 4.0536 -1.7576 0.2056 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.5504 -0.1890 2.7473 38 1 3.7258 -2.9642 4.8839 39 1 0.8497 -3.8395 6.4521 40 1 2.2357 -4.9556 6.4109 41 1 0.9169 -5.2504 8.4900 42 1 1.1669 -3.5344 8.8919 43 1 2.8596 -4.3581 11.1220 44 1 2.2173 -5.8601 14.0304 45 1 4.8501 -3.8087 9.3586 46 1 3.4639 -2.6924 9.3994 47 1 4.5329 -4.1140 6.9179 48 1 4.7834 -2.3983 7.3201 49 1 3.7247 -2.6538 -0.3204 50 1 4.0566 -0.9127 -0.4830 51 1 5.0599 -1.9132 0.5944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034646830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:28 Heat of formation + Delta-G solvation = 28.036409 kcal Electronic energy + Delta-G solvation = -28521.163326 eV Core-core repulsion = 24649.477099 eV Total energy + Delta-G solvation = -3871.686228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.01048 -39.70243 -37.79358 -36.24379 -34.76257 -33.82704 -32.89657 -30.65709 -30.31377 -29.92056 -28.16806 -27.67776 -26.93456 -24.03138 -23.23202 -22.80051 -22.21057 -20.90390 -20.56577 -19.81728 -19.16211 -17.72585 -17.01298 -16.64510 -16.57085 -16.00556 -15.12382 -15.01886 -14.74459 -14.53715 -14.20700 -14.07378 -13.77418 -13.62772 -13.57007 -13.49922 -13.16186 -13.05142 -12.86310 -12.64458 -12.49186 -12.10225 -11.94023 -11.73670 -11.72017 -11.41392 -11.36780 -11.04547 -10.95897 -10.76171 -10.69215 -10.61114 -10.14860 -10.04370 -9.98369 -9.67976 -9.52903 -9.38300 -9.20787 -8.85681 -8.77321 -6.87743 -5.69957 -2.98055 1.39903 1.86510 2.11638 3.19262 3.41444 3.47696 3.52859 3.54619 3.94280 4.04530 4.32175 4.53578 4.58535 4.62170 4.65149 4.78535 4.88721 4.96983 5.07136 5.13986 5.15358 5.24392 5.29562 5.35700 5.38486 5.50285 5.56401 5.58939 5.70803 5.71180 5.77019 5.82230 5.84784 5.94079 5.96982 6.10650 6.16651 6.33424 6.36339 6.39735 6.43940 6.57740 6.65860 6.74939 6.81357 7.07275 7.23343 7.46653 7.74630 7.76611 8.26938 8.49085 9.59886 10.19189 10.53854 11.52887 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.029254 B = 0.001867 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.920680 B =14991.343478 C =15162.151954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.145 4.145 4 C 0.015 3.985 5 C -0.173 4.173 6 C -0.011 4.011 7 C 0.602 3.398 8 O -0.531 6.531 9 N -0.712 5.712 10 C 0.145 3.855 11 H 0.089 0.911 12 C -0.124 4.124 13 C -0.131 4.131 14 C 0.177 3.823 15 H 0.046 0.954 16 N -0.725 5.725 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.120 4.120 26 C -0.118 4.118 27 N -0.263 5.263 28 N -0.282 5.282 29 C 0.085 3.915 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.161 0.839 38 H 0.403 0.597 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.067 0.933 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 13.479 -32.703 35.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.109 4.109 5 C -0.201 4.201 6 C -0.172 4.172 7 C 0.386 3.614 8 O -0.406 6.406 9 N -0.362 5.362 10 C 0.042 3.958 11 H 0.107 0.893 12 C -0.163 4.163 13 C -0.172 4.172 14 C 0.067 3.933 15 H 0.064 0.936 16 N -0.366 5.366 17 C -0.366 4.366 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.159 4.159 26 C -0.157 4.157 27 N -0.098 5.098 28 N -0.070 5.070 29 C -0.056 4.056 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.178 0.822 38 H 0.237 0.763 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.669 12.930 -32.288 34.973 hybrid contribution -0.530 -0.533 0.227 0.785 sum 3.138 12.397 -32.060 34.517 Atomic orbital electron populations 1.21830 0.92904 1.02692 1.02736 1.19672 0.96917 0.95398 0.92380 1.21864 1.00968 0.94595 1.02838 1.21360 0.90914 1.00369 0.98211 1.21469 1.02854 1.04664 0.91089 1.21972 0.95862 1.04006 0.95319 1.16888 0.82538 0.78497 0.83478 1.90809 1.29983 1.52753 1.67029 1.46014 1.28272 1.49937 1.12000 1.21151 0.96563 0.98919 0.79187 0.89298 1.21904 0.98885 0.96923 0.98600 1.22218 1.00952 1.01516 0.92553 1.20249 0.91855 0.94359 0.86855 0.93613 1.42432 1.82684 1.10642 1.00818 1.19249 1.38119 0.87892 0.91359 0.91243 1.24732 1.02912 0.97599 0.95916 1.69660 1.56349 1.31796 1.00440 0.86211 0.77954 0.84310 0.77865 1.21833 1.21844 1.20825 1.21759 1.00736 0.99617 0.93762 1.21755 0.95525 1.01301 0.97122 1.73513 1.23953 1.20848 0.91529 1.45280 1.19393 1.34575 1.07765 1.22157 0.93755 1.03314 0.86362 0.91726 0.92109 0.91613 0.90219 0.92769 0.91639 0.91706 0.82189 0.76265 0.92297 0.92313 0.91822 0.92438 0.78310 0.93604 0.91387 0.91924 0.91551 0.91862 0.89695 0.88797 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 8.78 37.15 0.33 -0.38 16 2 C -0.02 -0.12 2.89 -91.77 -0.27 -0.39 16 3 C -0.14 -0.64 9.18 37.16 0.34 -0.29 16 4 C 0.02 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -1.93 9.95 -39.36 -0.39 -2.32 16 6 C -0.01 -0.15 7.13 -82.76 -0.59 -0.74 16 7 C 0.60 9.02 7.79 -12.39 -0.10 8.92 16 8 O -0.53 -9.66 16.59 5.30 0.09 -9.57 16 9 N -0.71 -9.44 5.07 -54.79 -0.28 -9.72 16 10 C 0.15 2.12 2.45 -67.93 -0.17 1.95 16 11 H 0.09 1.46 7.58 -51.92 -0.39 1.06 16 12 C -0.12 -1.98 5.49 -26.73 -0.15 -2.13 16 13 C -0.13 -2.50 5.50 -26.72 -0.15 -2.65 16 14 C 0.18 3.57 2.77 -67.93 -0.19 3.38 16 15 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 16 N -0.73 -18.53 5.12 -53.43 -0.27 -18.80 16 17 C -0.23 -6.64 9.93 -15.06 -0.15 -6.78 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 20 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 21 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.12 -2.00 5.39 -26.71 -0.14 -2.15 16 26 C -0.12 -1.60 5.39 -26.71 -0.14 -1.74 16 27 N -0.26 -2.98 11.67 33.42 0.39 -2.59 16 28 N -0.28 -2.40 3.70 -63.85 -0.24 -2.64 16 29 C 0.08 0.32 10.89 59.85 0.65 0.97 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 7.35 -51.93 -0.38 -0.02 16 33 H 0.08 0.28 7.42 -51.93 -0.39 -0.11 16 34 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.16 1.69 7.46 -52.49 -0.39 1.30 16 38 H 0.40 4.56 8.33 -40.82 -0.34 4.22 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.38 10.40 7.80 -40.82 -0.32 10.08 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 50 H 0.09 0.13 7.44 -51.93 -0.39 -0.25 16 51 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 410.70 15.07 6.19 6.19 Total: -1.00 -34.78 410.70 -9.01 -43.79 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -8.90 Total: 8.76 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.69 Total: -5.26 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.33 Total: -61.74 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.78 -9.01 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034646830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.830 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds