Wall clock time and date at job start Tue Mar 31 2020 18:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47194 * 2 1 4 4 C 1.50703 * 109.47005 * 120.00099 * 2 1 3 5 5 C 1.35362 * 126.38274 * 325.31985 * 4 2 1 6 6 C 1.41506 * 105.49903 * 180.10701 * 5 4 2 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 H 1.09007 * 109.46737 * 324.99949 * 10 9 7 12 12 C 1.52998 * 109.47145 * 84.99285 * 10 9 7 13 13 C 1.53009 * 109.47096 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46897 * 300.00522 * 13 12 10 15 15 H 1.08998 * 109.46904 * 299.99869 * 14 13 12 16 16 N 1.46504 * 109.46654 * 179.97438 * 14 13 12 17 17 C 1.36937 * 120.00294 * 84.99822 * 16 14 13 18 18 H 1.07998 * 119.99682 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00095 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00368 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99983 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47253 * 89.99733 * 21 19 17 23 23 H 1.48499 * 109.47240 * 209.99790 * 21 19 17 24 24 H 1.48496 * 109.47386 * 329.99924 * 21 19 17 25 25 C 1.52998 * 109.47159 * 59.99962 * 14 13 12 26 26 C 1.52995 * 109.47290 * 204.99666 * 10 9 7 27 27 N 1.31810 * 106.96318 * 359.62268 * 6 5 4 28 28 N 1.28463 * 110.07473 * 0.23761 * 27 6 5 29 29 C 1.46505 * 124.88731 * 180.02562 * 28 27 6 30 30 H 1.09001 * 109.47438 * 59.99847 * 1 2 3 31 31 H 1.08997 * 109.47485 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47109 * 300.00196 * 1 2 3 33 33 H 1.09004 * 109.47109 * 239.99804 * 2 1 3 34 34 H 1.09001 * 109.47014 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47005 * 299.99834 * 3 2 1 36 36 H 1.09000 * 109.46801 * 59.99708 * 3 2 1 37 37 H 1.07997 * 127.25460 * 359.97221 * 5 4 2 38 38 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 39 39 H 1.09001 * 109.47335 * 300.00029 * 12 10 9 40 40 H 1.08999 * 109.47045 * 60.00647 * 12 10 9 41 41 H 1.08991 * 109.46964 * 180.02562 * 13 12 10 42 42 H 1.08999 * 109.46735 * 60.00348 * 13 12 10 43 43 H 0.96996 * 119.99697 * 264.99565 * 16 14 13 44 44 H 0.96999 * 120.00436 * 180.02562 * 20 19 17 45 45 H 1.09001 * 109.46820 * 180.02562 * 25 14 13 46 46 H 1.08999 * 109.47409 * 59.99602 * 25 14 13 47 47 H 1.08999 * 109.47294 * 299.99595 * 26 10 9 48 48 H 1.09002 * 109.46851 * 59.99863 * 26 10 9 49 49 H 1.09001 * 109.46959 * 89.97009 * 29 28 27 50 50 H 1.08991 * 109.46948 * 209.97191 * 29 28 27 51 51 H 1.09001 * 109.46403 * 329.97492 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4550 -0.7013 2.4548 6 6 2.2881 -1.5020 3.2717 7 6 2.0877 -1.8027 4.7039 8 8 1.1311 -1.3398 5.2942 9 7 2.9625 -2.5948 5.3549 10 6 2.7605 -2.8981 6.7739 11 1 2.3318 -2.0293 7.2736 12 6 1.8071 -4.0869 6.9106 13 6 1.5957 -4.4032 8.3926 14 6 2.9394 -4.7502 9.0368 15 1 3.3682 -5.6190 8.5374 16 7 2.7369 -5.0524 10.4560 17 6 2.3746 -6.3153 10.8422 18 1 2.2376 -7.0883 10.1005 19 6 2.1833 -6.6017 12.1868 20 7 2.3507 -5.6598 13.0907 21 14 1.6897 -8.3246 12.7137 22 1 2.9092 -9.1322 12.9706 23 1 0.8758 -8.2490 13.9535 24 1 0.8917 -8.9623 11.6359 25 6 3.8927 -3.5613 8.9000 26 6 4.1043 -3.2453 7.4175 27 7 3.2739 -1.9329 2.5101 28 7 3.1389 -1.4796 1.3157 29 6 4.0536 -1.7576 0.2056 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 0.5504 -0.1890 2.7473 38 1 3.7258 -2.9642 4.8839 39 1 0.8497 -3.8395 6.4521 40 1 2.2357 -4.9556 6.4109 41 1 0.9169 -5.2504 8.4900 42 1 1.1669 -3.5344 8.8919 43 1 2.8596 -4.3581 11.1220 44 1 2.2173 -5.8601 14.0304 45 1 4.8501 -3.8087 9.3586 46 1 3.4639 -2.6924 9.3994 47 1 4.5329 -4.1140 6.9179 48 1 4.7834 -2.3983 7.3201 49 1 3.7247 -2.6538 -0.3204 50 1 4.0566 -0.9127 -0.4830 51 1 5.0599 -1.9132 0.5944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034646830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:27 Heat of formation + Delta-G solvation = 4.897761 kcal Electronic energy + Delta-G solvation = -28522.166693 eV Core-core repulsion = 24649.477099 eV Total energy + Delta-G solvation = -3872.689595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -43.75005 -40.92714 -39.20885 -36.71457 -36.37760 -34.74432 -34.33586 -32.44337 -31.70216 -30.66022 -29.35907 -28.02697 -28.01383 -25.68598 -24.35461 -23.66628 -23.47081 -22.24643 -21.48199 -21.02311 -20.28908 -19.09334 -18.40667 -17.49900 -17.31881 -17.21883 -16.80038 -16.03803 -15.78722 -15.51922 -15.37382 -15.22464 -15.02583 -14.78077 -14.69101 -14.63034 -14.00770 -13.92070 -13.57357 -13.43675 -13.41364 -13.16899 -13.09247 -13.00533 -12.83281 -12.60508 -12.44748 -12.31108 -12.15077 -12.11370 -12.04598 -11.79589 -11.77410 -11.67706 -11.48717 -11.24157 -11.16215 -10.83546 -10.24819 -9.94691 -9.93638 -8.98526 -7.92426 -5.20556 0.49880 1.09340 1.46801 1.48699 1.53938 1.56974 2.12884 2.34814 2.57293 3.28124 3.40102 3.50624 3.72434 3.79780 3.87439 3.90323 4.09640 4.19196 4.28652 4.36112 4.36664 4.39063 4.40616 4.46387 4.51895 4.58578 4.60355 4.65692 4.66383 4.73036 4.82653 4.86208 4.98493 4.98804 5.00440 5.09403 5.12198 5.15355 5.24424 5.27264 5.31064 5.37895 5.42903 5.45676 5.52203 5.55023 5.63710 5.84324 6.30219 6.45071 6.89520 7.16960 7.35645 8.13147 8.36115 9.31236 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.029254 B = 0.001867 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.920680 B =14991.343478 C =15162.151954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.031 3.969 5 C -0.199 4.199 6 C -0.042 4.042 7 C 0.600 3.400 8 O -0.574 6.574 9 N -0.699 5.699 10 C 0.152 3.848 11 H 0.069 0.931 12 C -0.112 4.112 13 C -0.121 4.121 14 C 0.172 3.828 15 H 0.048 0.952 16 N -0.738 5.738 17 C -0.236 4.236 18 H 0.075 0.925 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 0.971 3.029 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.271 1.271 25 C -0.112 4.112 26 C -0.105 4.105 27 N -0.269 5.269 28 N -0.274 5.274 29 C 0.070 3.930 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.153 0.847 38 H 0.415 0.585 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.372 0.628 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.102 0.898 50 H 0.123 0.877 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 13.262 -36.442 39.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.094 4.094 5 C -0.227 4.227 6 C -0.200 4.200 7 C 0.386 3.614 8 O -0.452 6.452 9 N -0.349 5.349 10 C 0.048 3.952 11 H 0.087 0.913 12 C -0.151 4.151 13 C -0.162 4.162 14 C 0.064 3.936 15 H 0.066 0.934 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.093 0.907 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.801 3.199 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.196 1.196 25 C -0.151 4.151 26 C -0.143 4.143 27 N -0.106 5.106 28 N -0.062 5.062 29 C -0.068 4.068 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.171 0.829 38 H 0.252 0.748 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.120 0.880 50 H 0.142 0.858 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.198 12.693 -36.100 38.618 hybrid contribution -0.977 -0.423 1.224 1.622 sum 4.221 12.271 -34.876 37.212 Atomic orbital electron populations 1.21846 0.92997 1.02284 1.03148 1.19841 0.96796 0.95738 0.91631 1.21856 1.01242 0.93916 1.03040 1.21789 0.90091 0.99163 0.98366 1.21580 1.03281 1.05529 0.92350 1.21724 0.97590 1.06116 0.94612 1.17222 0.81917 0.77907 0.84393 1.90777 1.31736 1.54440 1.68217 1.45818 1.28362 1.49462 1.11275 1.20940 0.96840 0.97372 0.80079 0.91299 1.21763 0.99043 0.98202 0.96110 1.22021 0.99712 0.99906 0.94583 1.20485 0.93033 0.95956 0.84120 0.93435 1.42659 1.82672 1.09603 1.02820 1.19626 1.36611 0.88977 0.91578 0.90740 1.25553 1.04013 1.01426 0.96153 1.69821 1.58207 1.33779 1.00374 0.85163 0.77597 0.79932 0.77235 1.21257 1.22382 1.19633 1.21640 0.99571 0.97610 0.96246 1.21654 0.95087 1.03112 0.94465 1.73440 1.23433 1.21119 0.92604 1.45783 1.19610 1.33108 1.07728 1.22651 0.93251 1.05486 0.85406 0.89703 0.92936 0.92872 0.87435 0.92301 0.89661 0.93343 0.82916 0.74783 0.93403 0.90779 0.93932 0.94014 0.79669 0.94150 0.91236 0.92653 0.89567 0.89461 0.87960 0.85846 0.87613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.78 71.98 0.63 -0.56 16 2 C -0.02 -0.15 2.89 -11.54 -0.03 -0.18 16 3 C -0.14 -0.87 9.18 71.98 0.66 -0.21 16 4 C 0.03 0.47 5.84 41.40 0.24 0.71 16 5 C -0.20 -4.49 9.95 22.41 0.22 -4.27 16 6 C -0.04 -1.10 7.13 42.46 0.30 -0.79 16 7 C 0.60 18.31 7.79 86.75 0.68 18.98 16 8 O -0.57 -21.85 16.59 -3.95 -0.07 -21.92 16 9 N -0.70 -18.02 5.07 -445.53 -2.26 -20.28 16 10 C 0.15 4.35 2.45 44.99 0.11 4.46 16 11 H 0.07 2.30 7.58 -2.38 -0.02 2.28 16 12 C -0.11 -3.57 5.49 30.60 0.17 -3.41 16 13 C -0.12 -4.72 5.50 30.60 0.17 -4.55 16 14 C 0.17 6.96 2.77 44.99 0.12 7.09 16 15 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 16 N -0.74 -38.43 5.12 -322.94 -1.65 -40.08 16 17 C -0.24 -13.45 9.93 84.03 0.83 -12.62 16 18 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 19 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 20 N -0.97 -61.02 13.06 21.65 0.28 -60.73 16 21 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 25 C -0.11 -3.66 5.39 30.61 0.17 -3.49 16 26 C -0.10 -2.61 5.39 30.61 0.17 -2.45 16 27 N -0.27 -5.71 11.67 -48.17 -0.56 -6.28 16 28 N -0.27 -4.02 3.70 -355.92 -1.32 -5.33 16 29 C 0.07 0.27 10.89 127.77 1.39 1.66 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 0.57 7.35 -2.39 -0.02 0.55 16 33 H 0.11 0.26 7.42 -2.39 -0.02 0.24 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.15 3.49 7.46 -2.91 -0.02 3.47 16 38 H 0.42 8.68 8.33 -92.71 -0.77 7.91 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 40 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.37 20.80 7.80 -92.71 -0.72 20.07 16 44 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 50 H 0.12 -0.23 7.44 -2.39 -0.02 -0.25 16 51 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 Total: -1.00 -77.99 410.70 2.18 -75.81 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.57 Total: 33.22 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.30 Total: -3.85 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -5.51 Total: -132.71 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.07 Total: -21.92 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -77.99 2.18 -75.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034646830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.712 kcal (2) G-P(sol) polarization free energy of solvation -77.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds