Wall clock time and date at job start Tue Mar 31 2020 18:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47012 * 119.99597 * 2 1 3 5 5 C 1.50700 * 109.47511 * 239.99615 * 2 1 3 6 6 N 1.35378 * 126.56066 * 1.78092 * 5 2 1 7 7 H 0.97001 * 126.13768 * 359.97438 * 6 5 2 8 8 C 1.35853 * 107.72678 * 180.02562 * 6 5 2 9 9 N 1.30168 * 109.00116 * 359.97438 * 8 6 5 10 10 C 1.35755 * 108.86944 * 359.73443 * 9 8 6 11 11 C 1.47328 * 126.23729 * 180.30277 * 10 9 8 12 12 O 1.21620 * 119.99977 * 174.59075 * 11 10 9 13 13 N 1.34776 * 119.99741 * 354.59119 * 11 10 9 14 14 C 1.46502 * 119.99748 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46858 * 34.99977 * 14 13 11 16 16 C 1.53000 * 109.46857 * 155.00273 * 14 13 11 17 17 C 1.53003 * 109.46734 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47469 * 299.99812 * 17 16 14 19 19 H 1.09005 * 109.47108 * 300.00249 * 18 17 16 20 20 N 1.46495 * 109.47625 * 180.02562 * 18 17 16 21 21 C 1.36931 * 120.00601 * 154.99571 * 20 18 17 22 22 H 1.08002 * 119.99833 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00500 * 179.97438 * 21 20 18 24 24 N 1.31626 * 120.00007 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00397 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47014 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47032 * 119.99890 * 25 23 21 28 28 H 1.48492 * 109.47383 * 240.00276 * 25 23 21 29 29 C 1.53004 * 109.47084 * 59.99994 * 18 17 16 30 30 C 1.53001 * 109.47028 * 275.00026 * 14 13 11 31 31 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47244 * 60.00542 * 1 2 3 33 33 H 1.08998 * 109.47703 * 300.00416 * 1 2 3 34 34 H 1.08995 * 109.47739 * 70.24662 * 3 2 1 35 35 H 1.09000 * 109.47329 * 190.25131 * 3 2 1 36 36 H 1.09000 * 109.47072 * 310.24149 * 3 2 1 37 37 H 1.09000 * 109.47301 * 65.24307 * 4 2 1 38 38 H 1.09003 * 109.47175 * 185.25024 * 4 2 1 39 39 H 1.09002 * 109.47010 * 305.24104 * 4 2 1 40 40 H 1.08001 * 125.49394 * 179.97438 * 8 6 5 41 41 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.47196 * 299.99773 * 16 14 13 43 43 H 1.08998 * 109.47628 * 60.00175 * 16 14 13 44 44 H 1.08998 * 109.47405 * 60.00324 * 17 16 14 45 45 H 1.09007 * 109.47002 * 179.97438 * 17 16 14 46 46 H 0.97000 * 119.99754 * 335.00581 * 20 18 17 47 47 H 0.96995 * 120.00103 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.46577 * 60.00231 * 29 18 17 49 49 H 1.08993 * 109.47291 * 180.02562 * 29 18 17 50 50 H 1.09005 * 109.47338 * 300.00092 * 30 14 13 51 51 H 1.08998 * 109.47180 * 59.99958 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2426 -2.2195 7 1 0.3077 -1.2363 -2.2654 8 6 2.1185 -1.7880 -3.1356 9 7 3.3464 -1.6077 -2.7429 10 6 3.3360 -0.9351 -1.5638 11 6 4.5172 -0.5254 -0.7844 12 8 4.3812 0.1604 0.2107 13 7 5.7485 -0.9107 -1.1743 14 6 6.9231 -0.5028 -0.3996 15 1 6.6680 -0.4752 0.6598 16 6 8.0563 -1.5058 -0.6254 17 6 9.2832 -1.0795 0.1832 18 6 9.7347 0.3105 -0.2695 19 1 9.9895 0.2826 -1.3290 20 7 10.9099 0.7184 0.5042 21 6 11.7896 1.6298 -0.0159 22 1 11.6169 2.0482 -0.9964 23 6 12.9028 2.0167 0.7175 24 7 13.1131 1.5071 1.9128 25 14 14.1025 3.2605 0.0082 26 1 13.6428 3.6782 -1.3406 27 1 14.1683 4.4478 0.8979 28 1 15.4498 2.6449 -0.0962 29 6 8.6016 1.3134 -0.0438 30 6 7.3748 0.8873 -0.8518 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 0.5139 0.8899 34 1 1.8336 1.9009 0.9671 35 1 3.1145 1.4481 -0.1829 36 1 1.5351 2.0064 -0.7844 37 1 1.7553 -1.7724 1.2037 38 1 3.1259 -0.6404 1.2976 39 1 1.6019 -0.2643 2.1367 40 1 1.8175 -2.2901 -4.0432 41 1 5.8570 -1.4573 -1.9682 42 1 7.7345 -2.4961 -0.3032 43 1 8.3114 -1.5334 -1.6847 44 1 9.0285 -1.0516 1.2426 45 1 10.0904 -1.7943 0.0227 46 1 11.0649 0.3428 1.3850 47 1 13.8911 1.7772 2.4251 48 1 8.3468 1.3413 1.0156 49 1 8.9230 2.3036 -0.3667 50 1 7.6299 0.8597 -1.9112 51 1 6.5676 1.6018 -0.6910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034648942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:24 Heat of formation + Delta-G solvation = 11.517115 kcal Electronic energy + Delta-G solvation = -29529.167401 eV Core-core repulsion = 25656.764844 eV Total energy + Delta-G solvation = -3872.402558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.65777 -39.66790 -37.92223 -36.89741 -34.69305 -33.17477 -32.66732 -30.59555 -30.30481 -29.47932 -27.62598 -27.32460 -27.18498 -24.15468 -23.07846 -22.37719 -22.18081 -21.09324 -20.54363 -19.82557 -19.11000 -18.10401 -17.01554 -16.37450 -16.11911 -15.73180 -15.08954 -14.97877 -14.91538 -14.70507 -14.31294 -14.03646 -13.80709 -13.63485 -13.49495 -13.39221 -12.98832 -12.67201 -12.46748 -12.35151 -11.98916 -11.72446 -11.69281 -11.60149 -11.38824 -11.22211 -11.09672 -10.91023 -10.76145 -10.65948 -10.58404 -10.42999 -10.39214 -10.08604 -10.00118 -9.71047 -9.64597 -9.49884 -8.88066 -8.79322 -8.61551 -6.87231 -5.69865 -2.97803 1.36556 2.17653 2.57678 3.33907 3.46151 3.47709 3.53407 3.55521 4.07433 4.31561 4.43883 4.64421 4.65002 4.81091 4.94443 5.03134 5.10479 5.16941 5.22887 5.34267 5.40188 5.51545 5.56859 5.59620 5.67483 5.72586 5.77849 5.82334 5.84543 5.86216 5.89605 5.96244 5.98826 6.11501 6.16654 6.27938 6.35735 6.39645 6.40800 6.51839 6.60179 6.68402 6.81231 6.82085 6.87258 7.08357 7.24068 7.40674 7.74312 7.77517 8.36779 8.49313 9.60156 10.19596 10.54118 11.53100 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.002240 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.397406 B =12499.351900 C =12886.278606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.011 3.989 3 C -0.151 4.151 4 C -0.155 4.155 5 C 0.082 3.918 6 N -0.565 5.565 7 H 0.422 0.578 8 C 0.182 3.818 9 N -0.461 5.461 10 C -0.061 4.061 11 C 0.598 3.402 12 O -0.528 6.528 13 N -0.709 5.709 14 C 0.146 3.854 15 H 0.088 0.912 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.177 3.823 19 H 0.046 0.954 20 N -0.726 5.726 21 C -0.233 4.233 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.131 4.131 30 C -0.123 4.123 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.214 0.786 41 H 0.405 0.595 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.383 0.617 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.058 0.942 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.942 -8.542 -8.325 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.010 3.990 3 C -0.208 4.208 4 C -0.212 4.212 5 C -0.040 4.040 6 N -0.167 5.167 7 H 0.261 0.739 8 C -0.103 4.103 9 N -0.180 5.180 10 C -0.190 4.190 11 C 0.385 3.615 12 O -0.407 6.407 13 N -0.358 5.358 14 C 0.043 3.957 15 H 0.106 0.894 16 C -0.158 4.158 17 C -0.158 4.158 18 C 0.067 3.933 19 H 0.064 0.936 20 N -0.366 5.366 21 C -0.365 4.365 22 H 0.088 0.912 23 C -0.212 4.212 24 N -0.583 5.583 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 C -0.172 4.172 30 C -0.162 4.162 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.230 0.770 41 H 0.239 0.761 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.217 0.783 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.076 0.924 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -29.088 -8.212 -8.148 31.304 hybrid contribution -0.624 0.493 -0.338 0.864 sum -29.712 -7.720 -8.486 31.849 Atomic orbital electron populations 1.22041 0.94710 1.01621 1.02731 1.19104 0.94294 0.95864 0.89773 1.22154 1.05230 0.92129 1.01307 1.22182 1.05911 0.98373 0.94744 1.21236 0.90843 0.99484 0.92461 1.43179 1.10703 1.44446 1.18415 0.73923 1.25108 0.84835 1.03065 0.97325 1.70590 1.21063 1.15599 1.10767 1.20394 0.92542 1.09338 0.96739 1.16850 0.81867 0.79376 0.83411 1.90609 1.85307 1.38522 1.26264 1.45965 1.05565 1.53709 1.30553 1.21119 0.83592 0.94539 0.96479 0.89351 1.21745 0.94964 0.97807 1.01246 1.21745 0.95976 0.98527 0.99598 1.20245 0.87170 0.90406 0.95476 0.93633 1.42442 1.23764 1.50954 1.19445 1.19293 1.01337 1.15772 1.00054 0.91196 1.24734 0.98978 1.00782 0.96715 1.69674 1.29806 1.47108 1.11691 0.86146 0.81237 0.81000 0.78020 1.20606 1.21963 1.21971 1.22198 0.94524 1.01037 0.99436 1.21888 0.98549 0.95606 1.00192 0.92767 0.92785 0.91074 0.92057 0.88297 0.93933 0.93786 0.88052 0.92239 0.77006 0.76052 0.91900 0.91559 0.91996 0.91446 0.78333 0.93662 0.92494 0.91914 0.92370 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.54 37.16 0.28 -0.63 16 2 C 0.01 0.10 0.75 -155.66 -0.12 -0.02 16 3 C -0.15 -1.55 8.18 37.16 0.30 -1.25 16 4 C -0.15 -1.55 8.18 37.16 0.30 -1.24 16 5 C 0.08 0.78 5.59 -81.68 -0.46 0.33 16 6 N -0.56 -3.53 5.83 -10.11 -0.06 -3.59 16 7 H 0.42 1.21 8.11 -40.82 -0.33 0.88 16 8 C 0.18 1.27 13.04 -89.91 -1.17 0.09 16 9 N -0.46 -4.98 11.02 -11.03 -0.12 -5.10 16 10 C -0.06 -0.73 6.78 -83.09 -0.56 -1.30 16 11 C 0.60 8.12 7.32 -12.56 -0.09 8.03 16 12 O -0.53 -7.94 9.70 5.26 0.05 -7.89 16 13 N -0.71 -9.05 5.07 -54.91 -0.28 -9.33 16 14 C 0.15 2.05 2.46 -67.93 -0.17 1.88 16 15 H 0.09 1.37 7.58 -51.93 -0.39 0.97 16 16 C -0.12 -1.59 5.39 -26.73 -0.14 -1.73 16 17 C -0.12 -1.98 5.39 -26.73 -0.14 -2.12 16 18 C 0.18 3.54 2.77 -67.93 -0.19 3.35 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.73 -18.42 5.12 -53.43 -0.27 -18.70 16 21 C -0.23 -6.56 9.93 -15.06 -0.15 -6.71 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 25 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 C -0.13 -2.44 5.50 -26.75 -0.15 -2.59 16 30 C -0.12 -1.91 5.49 -26.76 -0.15 -2.06 16 31 H 0.05 0.27 8.13 -51.93 -0.42 -0.16 16 32 H 0.05 0.26 8.05 -51.93 -0.42 -0.15 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 35 H 0.10 1.30 4.67 -51.93 -0.24 1.06 16 36 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 1.29 4.64 -51.93 -0.24 1.05 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.40 4.70 8.33 -40.82 -0.34 4.36 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 395.83 15.07 5.97 5.97 Total: -1.00 -33.32 395.83 -10.30 -43.62 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -8.59 Total: 11.72 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.69 Total: -6.53 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -0.01 Total: -64.64 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.05 Total: -7.89 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.32 -10.30 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034648942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.135 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds