Wall clock time and date at job start Tue Mar 31 2020 18:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46964 * 2 1 4 4 C 1.52998 * 109.47012 * 119.99597 * 2 1 3 5 5 C 1.50700 * 109.47511 * 239.99615 * 2 1 3 6 6 N 1.35378 * 126.56066 * 1.78092 * 5 2 1 7 7 H 0.97001 * 126.13768 * 359.97438 * 6 5 2 8 8 C 1.35853 * 107.72678 * 180.02562 * 6 5 2 9 9 N 1.30168 * 109.00116 * 359.97438 * 8 6 5 10 10 C 1.35755 * 108.86944 * 359.73443 * 9 8 6 11 11 C 1.47328 * 126.23729 * 180.30277 * 10 9 8 12 12 O 1.21620 * 119.99977 * 174.59075 * 11 10 9 13 13 N 1.34776 * 119.99741 * 354.59119 * 11 10 9 14 14 C 1.46502 * 119.99748 * 179.97438 * 13 11 10 15 15 H 1.08998 * 109.46858 * 34.99977 * 14 13 11 16 16 C 1.53000 * 109.46857 * 155.00273 * 14 13 11 17 17 C 1.53003 * 109.46734 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47469 * 299.99812 * 17 16 14 19 19 H 1.09005 * 109.47108 * 300.00249 * 18 17 16 20 20 N 1.46495 * 109.47625 * 180.02562 * 18 17 16 21 21 C 1.36931 * 120.00601 * 154.99571 * 20 18 17 22 22 H 1.08002 * 119.99833 * 0.02562 * 21 20 18 23 23 C 1.38806 * 120.00500 * 179.97438 * 21 20 18 24 24 N 1.31626 * 120.00007 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00397 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47014 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47032 * 119.99890 * 25 23 21 28 28 H 1.48492 * 109.47383 * 240.00276 * 25 23 21 29 29 C 1.53004 * 109.47084 * 59.99994 * 18 17 16 30 30 C 1.53001 * 109.47028 * 275.00026 * 14 13 11 31 31 H 1.09003 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47244 * 60.00542 * 1 2 3 33 33 H 1.08998 * 109.47703 * 300.00416 * 1 2 3 34 34 H 1.08995 * 109.47739 * 70.24662 * 3 2 1 35 35 H 1.09000 * 109.47329 * 190.25131 * 3 2 1 36 36 H 1.09000 * 109.47072 * 310.24149 * 3 2 1 37 37 H 1.09000 * 109.47301 * 65.24307 * 4 2 1 38 38 H 1.09003 * 109.47175 * 185.25024 * 4 2 1 39 39 H 1.09002 * 109.47010 * 305.24104 * 4 2 1 40 40 H 1.08001 * 125.49394 * 179.97438 * 8 6 5 41 41 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.47196 * 299.99773 * 16 14 13 43 43 H 1.08998 * 109.47628 * 60.00175 * 16 14 13 44 44 H 1.08998 * 109.47405 * 60.00324 * 17 16 14 45 45 H 1.09007 * 109.47002 * 179.97438 * 17 16 14 46 46 H 0.97000 * 119.99754 * 335.00581 * 20 18 17 47 47 H 0.96995 * 120.00103 * 179.97438 * 24 23 21 48 48 H 1.08998 * 109.46577 * 60.00231 * 29 18 17 49 49 H 1.08993 * 109.47291 * 180.02562 * 29 18 17 50 50 H 1.09005 * 109.47338 * 300.00092 * 30 14 13 51 51 H 1.08998 * 109.47180 * 59.99958 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0324 -0.7105 -1.2304 6 7 1.2766 -1.2426 -2.2195 7 1 0.3077 -1.2363 -2.2654 8 6 2.1185 -1.7880 -3.1356 9 7 3.3464 -1.6077 -2.7429 10 6 3.3360 -0.9351 -1.5638 11 6 4.5172 -0.5254 -0.7844 12 8 4.3812 0.1604 0.2107 13 7 5.7485 -0.9107 -1.1743 14 6 6.9231 -0.5028 -0.3996 15 1 6.6680 -0.4752 0.6598 16 6 8.0563 -1.5058 -0.6254 17 6 9.2832 -1.0795 0.1832 18 6 9.7347 0.3105 -0.2695 19 1 9.9895 0.2826 -1.3290 20 7 10.9099 0.7184 0.5042 21 6 11.7896 1.6298 -0.0159 22 1 11.6169 2.0482 -0.9964 23 6 12.9028 2.0167 0.7175 24 7 13.1131 1.5071 1.9128 25 14 14.1025 3.2605 0.0082 26 1 13.6428 3.6782 -1.3406 27 1 14.1683 4.4478 0.8979 28 1 15.4498 2.6449 -0.0962 29 6 8.6016 1.3134 -0.0438 30 6 7.3748 0.8873 -0.8518 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 0.5139 0.8899 34 1 1.8336 1.9009 0.9671 35 1 3.1145 1.4481 -0.1829 36 1 1.5351 2.0064 -0.7844 37 1 1.7553 -1.7724 1.2037 38 1 3.1259 -0.6404 1.2976 39 1 1.6019 -0.2643 2.1367 40 1 1.8175 -2.2901 -4.0432 41 1 5.8570 -1.4573 -1.9682 42 1 7.7345 -2.4961 -0.3032 43 1 8.3114 -1.5334 -1.6847 44 1 9.0285 -1.0516 1.2426 45 1 10.0904 -1.7943 0.0227 46 1 11.0649 0.3428 1.3850 47 1 13.8911 1.7772 2.4251 48 1 8.3468 1.3413 1.0156 49 1 8.9230 2.3036 -0.3667 50 1 7.6299 0.8597 -1.9112 51 1 6.5676 1.6018 -0.6910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034648942.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:22 Heat of formation + Delta-G solvation = -9.882877 kcal Electronic energy + Delta-G solvation = -29530.095375 eV Core-core repulsion = 25656.764844 eV Total energy + Delta-G solvation = -3873.330531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.30933 -40.76706 -39.19847 -37.66776 -36.24208 -34.57152 -33.60082 -32.34106 -31.67593 -30.27941 -28.86050 -28.12181 -28.06146 -25.76971 -24.40852 -23.57077 -22.97231 -22.26264 -21.48478 -21.06075 -20.23397 -19.07862 -18.74935 -17.41441 -17.10375 -16.81840 -16.50505 -15.92325 -15.77034 -15.53540 -15.40060 -15.35671 -15.17068 -14.98147 -14.82016 -14.34695 -14.19172 -13.95719 -13.45266 -13.19002 -13.16921 -13.06943 -13.03034 -12.85078 -12.50080 -12.48048 -12.33901 -12.18209 -12.04325 -12.01048 -11.91866 -11.86118 -11.61114 -11.44498 -11.15940 -11.10984 -11.04855 -10.84132 -10.64800 -9.89880 -9.41393 -8.97605 -7.92090 -5.20008 0.59306 1.47278 1.48183 1.52116 1.58091 1.98180 2.40852 2.57546 2.57909 3.40706 3.46621 3.63111 3.79146 3.82759 3.87533 3.93085 4.03874 4.28385 4.32672 4.35510 4.37612 4.39718 4.43265 4.56475 4.61907 4.66179 4.68862 4.76661 4.86887 4.90062 4.91583 5.01020 5.01741 5.07031 5.09716 5.14409 5.19062 5.24421 5.27049 5.30330 5.45758 5.47047 5.52771 5.55054 5.56883 5.65962 5.81090 6.30981 6.36853 6.64336 6.93614 7.36248 7.39299 8.13838 8.36772 9.31862 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.002240 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.397406 B =12499.351900 C =12886.278606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.011 3.989 3 C -0.149 4.149 4 C -0.152 4.152 5 C 0.082 3.918 6 N -0.548 5.548 7 H 0.441 0.559 8 C 0.201 3.799 9 N -0.497 5.497 10 C -0.093 4.093 11 C 0.589 3.411 12 O -0.550 6.550 13 N -0.704 5.704 14 C 0.156 3.844 15 H 0.071 0.929 16 C -0.106 4.106 17 C -0.111 4.111 18 C 0.173 3.827 19 H 0.044 0.956 20 N -0.739 5.739 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.970 3.030 26 H -0.267 1.267 27 H -0.295 1.295 28 H -0.292 1.292 29 C -0.120 4.120 30 C -0.110 4.110 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.258 0.742 41 H 0.412 0.588 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.042 0.958 49 H 0.040 0.960 50 H 0.068 0.932 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.702 -9.595 -10.632 35.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 C -0.206 4.206 4 C -0.210 4.210 5 C -0.041 4.041 6 N -0.153 5.153 7 H 0.283 0.717 8 C -0.085 4.085 9 N -0.216 5.216 10 C -0.220 4.220 11 C 0.378 3.622 12 O -0.430 6.430 13 N -0.353 5.353 14 C 0.052 3.948 15 H 0.090 0.910 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.065 3.935 19 H 0.062 0.938 20 N -0.378 5.378 21 C -0.365 4.365 22 H 0.092 0.908 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.800 3.200 26 H -0.191 1.191 27 H -0.223 1.223 28 H -0.220 1.220 29 C -0.161 4.161 30 C -0.149 4.149 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.274 0.726 41 H 0.248 0.752 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -31.915 -9.278 -10.504 34.857 hybrid contribution 0.122 0.802 0.341 0.880 sum -31.793 -8.476 -10.164 34.438 Atomic orbital electron populations 1.22001 0.91918 1.02924 1.03692 1.19085 0.96426 0.94476 0.89046 1.22075 1.03332 0.93607 1.01588 1.22103 1.03979 0.98971 0.95903 1.21232 0.90594 0.99232 0.93089 1.43125 1.11611 1.43311 1.17203 0.71693 1.25999 0.83808 1.00925 0.97719 1.70545 1.23337 1.16959 1.10795 1.20242 0.92598 1.11373 0.97795 1.17244 0.82557 0.79028 0.83397 1.90618 1.85729 1.39380 1.27270 1.45804 1.04989 1.53879 1.30656 1.20846 0.84475 0.93764 0.95753 0.91047 1.21638 0.92886 0.98381 1.01545 1.21621 0.97395 0.96176 0.99795 1.20473 0.85776 0.92576 0.94715 0.93754 1.42667 1.25071 1.50635 1.19408 1.19650 1.01462 1.15449 0.99984 0.90817 1.25545 1.01092 1.03221 0.97302 1.69828 1.30412 1.48902 1.13094 0.85109 0.78779 0.78371 0.77764 1.19098 1.22283 1.21967 1.21992 0.95469 0.99561 0.99078 1.21738 0.96592 0.96551 1.00056 0.91259 0.91292 0.90754 0.92029 0.91371 0.93029 0.93307 0.91041 0.91563 0.72644 0.75175 0.89687 0.90049 0.92569 0.91522 0.79667 0.94143 0.93870 0.94120 0.91368 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 7.54 71.98 0.54 -0.78 16 2 C 0.01 0.19 0.75 -52.93 -0.04 0.15 16 3 C -0.15 -3.03 8.18 71.98 0.59 -2.44 16 4 C -0.15 -3.00 8.18 71.98 0.59 -2.41 16 5 C 0.08 1.43 5.59 41.59 0.23 1.67 16 6 N -0.55 -5.02 5.83 -185.91 -1.08 -6.11 16 7 H 0.44 0.67 8.11 -92.71 -0.75 -0.08 16 8 C 0.20 2.10 13.04 180.10 2.35 4.44 16 9 N -0.50 -9.76 11.02 -188.81 -2.08 -11.84 16 10 C -0.09 -2.13 6.78 40.50 0.27 -1.85 16 11 C 0.59 16.20 7.32 86.63 0.63 16.84 16 12 O -0.55 -17.27 9.70 -4.09 -0.04 -17.31 16 13 N -0.70 -17.71 5.07 -445.89 -2.26 -19.98 16 14 C 0.16 4.35 2.46 44.99 0.11 4.46 16 15 H 0.07 2.26 7.58 -2.39 -0.02 2.25 16 16 C -0.11 -2.68 5.39 30.60 0.16 -2.52 16 17 C -0.11 -3.65 5.39 30.59 0.16 -3.48 16 18 C 0.17 6.99 2.77 44.99 0.12 7.12 16 19 H 0.04 1.82 8.08 -2.38 -0.02 1.80 16 20 N -0.74 -38.43 5.12 -322.95 -1.65 -40.09 16 21 C -0.23 -13.32 9.93 84.03 0.83 -12.48 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 23 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 24 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 25 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 29 C -0.12 -4.62 5.50 30.58 0.17 -4.45 16 30 C -0.11 -3.45 5.49 30.58 0.17 -3.28 16 31 H 0.07 0.43 8.13 -2.39 -0.02 0.41 16 32 H 0.07 0.43 8.05 -2.39 -0.02 0.41 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.20 8.11 -2.39 -0.02 1.18 16 35 H 0.07 1.86 4.67 -2.39 -0.01 1.85 16 36 H 0.05 0.91 8.11 -2.39 -0.02 0.89 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.89 4.64 -2.39 -0.01 1.88 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.26 0.04 8.06 -2.91 -0.02 0.02 16 41 H 0.41 9.12 8.33 -92.70 -0.77 8.35 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 46 H 0.37 20.77 7.80 -92.71 -0.72 20.04 16 47 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 51 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -75.02 395.83 1.27 -73.75 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: -1.29 Total: 36.08 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 7.37 Total: -3.27 kcal Atomic # 7 Polarization: -131.92 SS G_CDS: -6.80 Total: -138.72 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.04 Total: -17.31 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -75.02 1.27 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034648942.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.867 kcal (2) G-P(sol) polarization free energy of solvation -75.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds