Wall clock time and date at job start Tue Mar 31 2020 18:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47529 * 2 1 4 4 C 1.50699 * 109.47104 * 119.99572 * 2 1 3 5 5 C 1.39673 * 126.07319 * 274.71933 * 4 2 1 6 6 C 1.38407 * 105.35864 * 179.84916 * 5 4 2 7 7 C 1.47164 * 126.88228 * 180.14193 * 6 5 4 8 8 O 1.21627 * 119.99801 * 185.73982 * 7 6 5 9 9 N 1.34777 * 120.00065 * 5.73572 * 7 6 5 10 10 C 1.46502 * 120.00076 * 185.10952 * 9 7 6 11 11 H 1.08997 * 109.46787 * 34.99437 * 10 9 7 12 12 C 1.52996 * 109.47165 * 154.99953 * 10 9 7 13 13 C 1.53003 * 109.46855 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47185 * 299.99826 * 13 12 10 15 15 H 1.09006 * 109.47309 * 300.00189 * 14 13 12 16 16 N 1.46499 * 109.47184 * 179.97438 * 14 13 12 17 17 C 1.36933 * 120.00048 * 155.00226 * 16 14 13 18 18 H 1.08006 * 120.00030 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00222 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99906 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46976 * 89.99594 * 21 19 17 23 23 H 1.48501 * 109.46944 * 209.99661 * 21 19 17 24 24 H 1.48500 * 109.47318 * 329.99754 * 21 19 17 25 25 C 1.53000 * 109.46738 * 60.00264 * 14 13 12 26 26 C 1.52999 * 109.47322 * 299.99339 * 25 14 13 27 27 N 1.36600 * 106.23151 * 0.40186 * 6 5 4 28 28 C 1.46501 * 125.18747 * 179.71794 * 27 6 5 29 29 N 1.28436 * 109.61894 * 359.73830 * 27 6 5 30 30 H 1.09006 * 109.47453 * 300.00507 * 1 2 3 31 31 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47051 * 59.99671 * 1 2 3 33 33 H 1.08993 * 109.47324 * 240.00162 * 2 1 3 34 34 H 1.09003 * 109.46674 * 59.99193 * 3 2 1 35 35 H 1.08993 * 109.47641 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46713 * 300.00318 * 3 2 1 37 37 H 1.07996 * 127.31993 * 359.97438 * 5 4 2 38 38 H 0.97000 * 120.00098 * 5.10374 * 9 7 6 39 39 H 1.08992 * 109.47100 * 299.99757 * 12 10 9 40 40 H 1.08997 * 109.47179 * 60.00167 * 12 10 9 41 41 H 1.08997 * 109.46928 * 60.00213 * 13 12 10 42 42 H 1.09003 * 109.47046 * 180.02562 * 13 12 10 43 43 H 0.97000 * 119.99897 * 335.00565 * 16 14 13 44 44 H 0.96989 * 120.00294 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.47188 * 60.00130 * 25 14 13 46 46 H 1.09006 * 109.46784 * 179.97438 * 25 14 13 47 47 H 1.08993 * 109.47635 * 300.00517 * 26 25 14 48 48 H 1.08994 * 109.47309 * 179.97438 * 26 25 14 49 49 H 1.09006 * 109.47136 * 266.15007 * 28 27 6 50 50 H 1.08992 * 109.47329 * 26.15279 * 28 27 6 51 51 H 1.09000 * 109.47269 * 146.15279 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2188 -0.1390 2.4913 6 6 2.6850 -1.1659 3.2937 7 6 3.0339 -1.0827 4.7210 8 8 3.5321 -2.0400 5.2820 9 7 2.8015 0.0543 5.4064 10 6 3.2500 0.1768 6.7957 11 1 4.1931 -0.3551 6.9212 12 6 3.4480 1.6544 7.1393 13 6 3.9157 1.7823 8.5904 14 6 2.8617 1.1791 9.5211 15 1 1.9186 1.7110 9.3951 16 7 3.3098 1.3010 10.9105 17 6 2.3921 1.3231 11.9265 18 1 1.3377 1.2511 11.7035 19 6 2.8166 1.4392 13.2430 20 7 4.1014 1.5274 13.5148 21 14 1.5646 1.4700 14.6289 22 1 1.3077 0.0836 15.0948 23 1 2.0928 2.2809 15.7552 24 1 0.2978 2.0700 14.1384 25 6 2.6638 -0.2986 9.1774 26 6 2.1959 -0.4265 7.7263 27 7 2.7620 -2.2706 2.4939 28 6 3.2154 -3.5952 2.9252 29 7 2.3765 -1.9706 1.3061 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 2.0360 0.8856 2.7794 38 1 2.3374 0.7915 4.9798 39 1 4.1985 2.0843 6.4760 40 1 2.5048 2.1862 7.0137 41 1 4.8588 1.2505 8.7164 42 1 4.0564 2.8351 8.8354 43 1 4.2567 1.3661 11.1107 44 1 4.3982 1.6081 14.4346 45 1 3.6068 -0.8304 9.3034 46 1 1.9131 -0.7285 9.8407 47 1 1.2529 0.1053 7.6003 48 1 2.0554 -1.4792 7.4813 49 1 4.2805 -3.6998 2.7182 50 1 3.0403 -3.7087 3.9950 51 1 2.6629 -4.3627 2.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034768466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:35 Heat of formation + Delta-G solvation = 26.129668 kcal Electronic energy + Delta-G solvation = -28775.967139 eV Core-core repulsion = 24904.198229 eV Total energy + Delta-G solvation = -3871.768910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.84812 -39.90957 -37.96113 -36.29172 -34.97770 -33.30429 -32.53266 -31.44633 -30.45165 -30.31163 -27.59903 -27.33724 -27.00589 -24.16443 -23.38675 -22.68746 -22.31469 -21.09863 -20.53972 -19.83522 -19.24630 -17.98964 -17.01337 -16.57317 -16.43121 -16.05395 -15.36820 -14.88779 -14.79143 -14.55315 -14.31366 -14.13128 -13.86016 -13.76993 -13.58018 -13.53042 -13.05675 -12.87082 -12.76636 -12.58954 -12.44277 -12.06979 -11.84020 -11.76263 -11.53818 -11.48349 -11.46908 -11.08795 -10.83373 -10.81527 -10.78997 -10.69405 -10.23319 -10.16030 -10.09341 -9.79341 -9.60278 -9.42372 -9.15772 -9.03360 -8.85529 -6.94263 -5.75560 -3.04048 1.02403 2.11074 2.26888 3.00797 3.01398 3.43838 3.48984 3.50501 4.03995 4.29423 4.53915 4.59716 4.69568 4.81670 4.85350 4.91303 4.99097 5.01351 5.05054 5.20762 5.23670 5.26456 5.30270 5.35798 5.50636 5.50720 5.57062 5.58517 5.65269 5.68600 5.69949 5.81006 5.84977 5.90929 5.95682 5.99823 6.17452 6.20768 6.22196 6.27328 6.44730 6.45935 6.53780 6.61003 6.70695 6.97563 7.14011 7.26834 7.70981 7.79757 7.95880 8.43332 9.54249 10.12806 10.47211 11.47188 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002042 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.885291 B =13710.139960 C =14177.550649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.032 3.968 5 C -0.184 4.184 6 C -0.034 4.034 7 C 0.589 3.411 8 O -0.538 6.538 9 N -0.708 5.708 10 C 0.148 3.852 11 H 0.089 0.911 12 C -0.119 4.119 13 C -0.120 4.120 14 C 0.177 3.823 15 H 0.046 0.954 16 N -0.725 5.725 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.132 4.132 26 C -0.124 4.124 27 N -0.257 5.257 28 C 0.084 3.916 29 N -0.278 5.278 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.159 0.841 38 H 0.401 0.599 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.056 0.944 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.113 0.887 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 -2.549 -29.068 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 C -0.202 4.202 4 C -0.125 4.125 5 C -0.213 4.213 6 C -0.162 4.162 7 C 0.374 3.626 8 O -0.415 6.415 9 N -0.358 5.358 10 C 0.045 3.955 11 H 0.107 0.893 12 C -0.158 4.158 13 C -0.159 4.159 14 C 0.067 3.933 15 H 0.064 0.936 16 N -0.366 5.366 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.173 4.173 26 C -0.163 4.163 27 N -0.044 5.044 28 C -0.056 4.056 29 N -0.111 5.111 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.177 0.823 38 H 0.236 0.764 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.131 0.869 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.596 -4.354 -29.076 29.619 hybrid contribution -0.584 0.887 1.204 1.606 sum -4.180 -3.466 -27.872 28.396 Atomic orbital electron populations 1.21816 0.93887 1.02161 1.02137 1.19422 0.95667 0.94980 0.92908 1.21833 1.01373 0.94648 1.02316 1.21923 1.04079 0.90095 0.96362 1.22035 1.06803 0.99471 0.93013 1.21468 1.11436 0.89197 0.94131 1.16914 0.78468 0.83509 0.83674 1.90800 1.44564 1.36036 1.70137 1.45864 1.59290 1.16354 1.14262 1.21200 0.98775 0.97292 0.78255 0.89274 1.21761 1.01822 0.94125 0.98070 1.21754 0.99807 1.01802 0.92544 1.20246 0.95367 0.92415 0.85289 0.93560 1.42428 1.06777 1.87813 0.99555 1.19237 0.89307 1.42028 0.86211 0.91235 1.24744 0.95957 1.03112 0.97291 1.69657 1.12631 1.57375 1.18516 0.86210 0.80380 0.77433 0.82299 1.21776 1.21821 1.20803 1.22229 1.01381 1.00681 0.93007 1.21906 0.97908 1.00523 0.95997 1.45543 1.44309 1.09659 1.04856 1.22382 1.01232 0.78525 1.03433 1.73119 1.17118 1.17917 1.02964 0.92273 0.92568 0.91991 0.89895 0.92091 0.92374 0.91903 0.82345 0.76450 0.91724 0.91398 0.91931 0.91247 0.78301 0.93553 0.92473 0.91754 0.92198 0.92238 0.89704 0.86876 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.17 37.15 0.34 -0.54 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -0.79 8.78 37.16 0.33 -0.46 16 4 C 0.03 0.31 6.13 -82.47 -0.51 -0.20 16 5 C -0.18 -1.71 9.64 -38.98 -0.38 -2.09 16 6 C -0.03 -0.38 6.96 -82.06 -0.57 -0.95 16 7 C 0.59 7.31 7.74 -12.64 -0.10 7.22 16 8 O -0.54 -8.20 14.35 5.25 0.08 -8.13 16 9 N -0.71 -7.45 5.05 -54.96 -0.28 -7.73 16 10 C 0.15 1.85 2.42 -67.93 -0.16 1.69 16 11 H 0.09 1.28 7.65 -51.93 -0.40 0.88 16 12 C -0.12 -1.38 5.39 -26.73 -0.14 -1.53 16 13 C -0.12 -1.85 5.39 -26.73 -0.14 -1.99 16 14 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 15 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 16 N -0.73 -17.88 5.12 -53.42 -0.27 -18.15 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.13 -2.34 5.50 -26.73 -0.15 -2.48 16 26 C -0.12 -1.77 5.49 -26.73 -0.15 -1.92 16 27 N -0.26 -2.92 3.75 -63.88 -0.24 -3.16 16 28 C 0.08 0.75 10.88 59.85 0.65 1.40 16 29 N -0.28 -3.21 11.90 33.64 0.40 -2.81 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.30 7.36 -51.93 -0.38 -0.08 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.16 1.02 7.08 -52.49 -0.37 0.65 16 38 H 0.40 3.11 7.69 -40.82 -0.31 2.80 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.11 1.11 6.22 -51.93 -0.32 0.79 16 51 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 407.43 15.07 6.14 6.14 Total: -1.00 -33.03 407.43 -9.03 -42.06 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.83 Total: 8.10 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -1.72 Total: -6.25 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: 0.33 Total: -59.27 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.13 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.03 -9.03 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034768466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.186 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds