Wall clock time and date at job start Tue Mar 31 2020 18:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47529 * 2 1 4 4 C 1.50699 * 109.47104 * 119.99572 * 2 1 3 5 5 C 1.39673 * 126.07319 * 274.71933 * 4 2 1 6 6 C 1.38407 * 105.35864 * 179.84916 * 5 4 2 7 7 C 1.47164 * 126.88228 * 180.14193 * 6 5 4 8 8 O 1.21627 * 119.99801 * 185.73982 * 7 6 5 9 9 N 1.34777 * 120.00065 * 5.73572 * 7 6 5 10 10 C 1.46502 * 120.00076 * 185.10952 * 9 7 6 11 11 H 1.08997 * 109.46787 * 34.99437 * 10 9 7 12 12 C 1.52996 * 109.47165 * 154.99953 * 10 9 7 13 13 C 1.53003 * 109.46855 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47185 * 299.99826 * 13 12 10 15 15 H 1.09006 * 109.47309 * 300.00189 * 14 13 12 16 16 N 1.46499 * 109.47184 * 179.97438 * 14 13 12 17 17 C 1.36933 * 120.00048 * 155.00226 * 16 14 13 18 18 H 1.08006 * 120.00030 * 359.97438 * 17 16 14 19 19 C 1.38816 * 120.00222 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99906 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46976 * 89.99594 * 21 19 17 23 23 H 1.48501 * 109.46944 * 209.99661 * 21 19 17 24 24 H 1.48500 * 109.47318 * 329.99754 * 21 19 17 25 25 C 1.53000 * 109.46738 * 60.00264 * 14 13 12 26 26 C 1.52999 * 109.47322 * 299.99339 * 25 14 13 27 27 N 1.36600 * 106.23151 * 0.40186 * 6 5 4 28 28 C 1.46501 * 125.18747 * 179.71794 * 27 6 5 29 29 N 1.28436 * 109.61894 * 359.73830 * 27 6 5 30 30 H 1.09006 * 109.47453 * 300.00507 * 1 2 3 31 31 H 1.08997 * 109.47091 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47051 * 59.99671 * 1 2 3 33 33 H 1.08993 * 109.47324 * 240.00162 * 2 1 3 34 34 H 1.09003 * 109.46674 * 59.99193 * 3 2 1 35 35 H 1.08993 * 109.47641 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46713 * 300.00318 * 3 2 1 37 37 H 1.07996 * 127.31993 * 359.97438 * 5 4 2 38 38 H 0.97000 * 120.00098 * 5.10374 * 9 7 6 39 39 H 1.08992 * 109.47100 * 299.99757 * 12 10 9 40 40 H 1.08997 * 109.47179 * 60.00167 * 12 10 9 41 41 H 1.08997 * 109.46928 * 60.00213 * 13 12 10 42 42 H 1.09003 * 109.47046 * 180.02562 * 13 12 10 43 43 H 0.97000 * 119.99897 * 335.00565 * 16 14 13 44 44 H 0.96989 * 120.00294 * 180.02562 * 20 19 17 45 45 H 1.08993 * 109.47188 * 60.00130 * 25 14 13 46 46 H 1.09006 * 109.46784 * 179.97438 * 25 14 13 47 47 H 1.08993 * 109.47635 * 300.00517 * 26 25 14 48 48 H 1.08994 * 109.47309 * 179.97438 * 26 25 14 49 49 H 1.09006 * 109.47136 * 266.15007 * 28 27 6 50 50 H 1.08992 * 109.47329 * 26.15279 * 28 27 6 51 51 H 1.09000 * 109.47269 * 146.15279 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.2188 -0.1390 2.4913 6 6 2.6850 -1.1659 3.2937 7 6 3.0339 -1.0827 4.7210 8 8 3.5321 -2.0400 5.2820 9 7 2.8015 0.0543 5.4064 10 6 3.2500 0.1768 6.7957 11 1 4.1931 -0.3551 6.9212 12 6 3.4480 1.6544 7.1393 13 6 3.9157 1.7823 8.5904 14 6 2.8617 1.1791 9.5211 15 1 1.9186 1.7110 9.3951 16 7 3.3098 1.3010 10.9105 17 6 2.3921 1.3231 11.9265 18 1 1.3377 1.2511 11.7035 19 6 2.8166 1.4392 13.2430 20 7 4.1014 1.5274 13.5148 21 14 1.5646 1.4700 14.6289 22 1 1.3077 0.0836 15.0948 23 1 2.0928 2.2809 15.7552 24 1 0.2978 2.0700 14.1384 25 6 2.6638 -0.2986 9.1774 26 6 2.1959 -0.4265 7.7263 27 7 2.7620 -2.2706 2.4939 28 6 3.2154 -3.5952 2.9252 29 7 2.3765 -1.9706 1.3061 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 2.0360 0.8856 2.7794 38 1 2.3374 0.7915 4.9798 39 1 4.1985 2.0843 6.4760 40 1 2.5048 2.1862 7.0137 41 1 4.8588 1.2505 8.7164 42 1 4.0564 2.8351 8.8354 43 1 4.2567 1.3661 11.1107 44 1 4.3982 1.6081 14.4346 45 1 3.6068 -0.8304 9.3034 46 1 1.9131 -0.7285 9.8407 47 1 1.2529 0.1053 7.6003 48 1 2.0554 -1.4792 7.4813 49 1 4.2805 -3.6998 2.7182 50 1 3.0403 -3.7087 3.9950 51 1 2.6629 -4.3627 2.3832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034768466.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:33 Heat of formation + Delta-G solvation = 4.960816 kcal Electronic energy + Delta-G solvation = -28776.885090 eV Core-core repulsion = 24904.198229 eV Total energy + Delta-G solvation = -3872.686860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.61844 -40.94635 -39.21933 -36.90601 -36.37013 -34.80337 -33.31783 -32.74772 -31.70765 -31.63892 -28.90240 -27.97413 -27.67003 -25.75709 -24.50995 -23.65741 -23.44540 -22.23257 -21.45758 -21.01555 -20.20306 -19.15140 -18.66626 -17.38523 -17.36369 -17.07313 -16.73116 -16.14864 -15.72773 -15.56469 -15.35589 -15.12803 -15.04100 -14.95652 -14.72159 -14.53657 -14.14716 -13.99896 -13.51191 -13.43841 -13.41650 -13.15115 -13.07206 -12.84599 -12.82294 -12.43510 -12.32270 -12.28424 -12.12972 -12.12046 -12.01412 -11.98044 -11.66006 -11.47780 -11.43821 -11.20812 -11.12517 -10.82635 -10.32898 -9.99697 -9.87120 -8.97846 -7.92435 -5.20194 0.18977 1.34650 1.47254 1.48820 1.53544 1.56934 2.11221 2.12998 2.57446 3.39039 3.40439 3.47557 3.76683 3.84094 3.90667 3.93819 4.14687 4.24153 4.29519 4.30714 4.35006 4.38790 4.40933 4.47028 4.52648 4.56189 4.61416 4.62761 4.66522 4.74390 4.87453 4.92406 5.01564 5.07238 5.10946 5.11833 5.15486 5.24265 5.27316 5.29590 5.41429 5.45014 5.48971 5.52032 5.56368 5.57649 5.66056 5.71540 6.30579 6.40708 7.01621 7.09354 7.35967 8.14340 8.36082 9.31219 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002042 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.885291 B =13710.139960 C =14177.550649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.010 4.010 3 C -0.141 4.141 4 C 0.026 3.974 5 C -0.171 4.171 6 C -0.054 4.054 7 C 0.590 3.410 8 O -0.573 6.573 9 N -0.691 5.691 10 C 0.157 3.843 11 H 0.069 0.931 12 C -0.106 4.106 13 C -0.113 4.113 14 C 0.171 3.829 15 H 0.048 0.952 16 N -0.740 5.740 17 C -0.234 4.234 18 H 0.075 0.925 19 C -0.080 4.080 20 N -0.971 5.971 21 Si 0.969 3.031 22 H -0.291 1.291 23 H -0.296 1.296 24 H -0.268 1.268 25 C -0.122 4.122 26 C -0.113 4.113 27 N -0.269 5.269 28 C 0.082 3.918 29 N -0.300 5.300 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.191 0.809 38 H 0.419 0.581 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.076 0.924 48 H 0.049 0.951 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.533 -0.891 -31.350 31.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 C -0.198 4.198 4 C -0.131 4.131 5 C -0.199 4.199 6 C -0.182 4.182 7 C 0.376 3.624 8 O -0.453 6.453 9 N -0.342 5.342 10 C 0.053 3.947 11 H 0.088 0.912 12 C -0.144 4.144 13 C -0.152 4.152 14 C 0.063 3.937 15 H 0.067 0.933 16 N -0.379 5.379 17 C -0.366 4.366 18 H 0.093 0.907 19 C -0.272 4.272 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.192 1.192 25 C -0.163 4.163 26 C -0.152 4.152 27 N -0.056 5.056 28 C -0.057 4.057 29 N -0.133 5.133 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.208 0.792 38 H 0.257 0.743 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.067 0.933 49 H 0.109 0.891 50 H 0.119 0.881 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.190 -2.679 -31.424 31.962 hybrid contribution -0.123 0.331 1.809 1.843 sum -5.313 -2.348 -29.614 30.179 Atomic orbital electron populations 1.21794 0.93145 1.01554 1.03154 1.19546 0.96193 0.95722 0.91543 1.21826 1.00965 0.93497 1.03549 1.22469 1.03350 0.89700 0.97538 1.22428 1.04971 1.00320 0.92211 1.21475 1.12932 0.90095 0.93714 1.17101 0.77843 0.83312 0.84157 1.90791 1.46199 1.37372 1.70933 1.45587 1.58907 1.16483 1.13204 1.20933 0.97195 0.97691 0.78929 0.91235 1.21665 1.03737 0.93456 0.95542 1.21637 0.98220 1.01110 0.94224 1.20513 0.96575 0.93199 0.83384 0.93349 1.42681 1.05848 1.87828 1.01507 1.19619 0.90013 1.39880 0.87075 0.90696 1.25544 0.97693 1.04196 0.99776 1.69813 1.14454 1.59490 1.18449 0.85189 0.78654 0.77098 0.79160 1.21843 1.22306 1.19249 1.22025 0.99859 0.99325 0.95126 1.21769 0.99151 1.00453 0.93818 1.45756 1.44697 1.10246 1.04912 1.22439 1.01930 0.78507 1.02843 1.73112 1.17856 1.19134 1.03227 0.91953 0.93986 0.90276 0.90304 0.91124 0.92991 0.90466 0.79236 0.74338 0.89008 0.89125 0.92809 0.91319 0.79715 0.94183 0.94176 0.94174 0.90519 0.93258 0.89078 0.88134 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.17 71.98 0.66 -0.74 16 2 C -0.01 -0.12 3.38 -11.54 -0.04 -0.16 16 3 C -0.14 -1.11 8.78 71.98 0.63 -0.47 16 4 C 0.03 0.45 6.13 43.05 0.26 0.72 16 5 C -0.17 -2.71 9.64 22.66 0.22 -2.49 16 6 C -0.05 -1.14 6.96 40.79 0.28 -0.85 16 7 C 0.59 13.88 7.74 86.59 0.67 14.55 16 8 O -0.57 -17.50 14.35 -4.12 -0.06 -17.56 16 9 N -0.69 -12.69 5.05 -446.05 -2.25 -14.95 16 10 C 0.16 3.61 2.42 44.99 0.11 3.72 16 11 H 0.07 1.94 7.65 -2.39 -0.02 1.92 16 12 C -0.11 -2.10 5.39 30.59 0.16 -1.94 16 13 C -0.11 -3.31 5.39 30.60 0.16 -3.15 16 14 C 0.17 6.43 2.77 44.99 0.12 6.55 16 15 H 0.05 1.81 8.08 -2.38 -0.02 1.79 16 16 N -0.74 -36.94 5.12 -322.93 -1.65 -38.59 16 17 C -0.23 -12.93 9.93 84.04 0.83 -12.09 16 18 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 19 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 20 N -0.97 -59.85 13.06 21.65 0.28 -59.56 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C -0.12 -4.37 5.50 30.59 0.17 -4.20 16 26 C -0.11 -3.08 5.49 30.60 0.17 -2.92 16 27 N -0.27 -5.94 3.75 -356.02 -1.33 -7.27 16 28 C 0.08 1.47 10.88 127.77 1.39 2.86 16 29 N -0.30 -6.65 11.90 -47.49 -0.57 -7.21 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.42 7.36 -2.39 -0.02 0.41 16 35 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.19 1.60 7.08 -2.91 -0.02 1.58 16 38 H 0.42 4.76 7.69 -92.71 -0.71 4.05 16 39 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.37 20.06 7.80 -92.71 -0.72 19.34 16 44 H 0.25 14.95 8.31 -92.72 -0.77 14.18 16 45 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 49 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.10 2.06 6.22 -2.39 -0.01 2.04 16 51 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -73.21 407.43 2.21 -70.99 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.51 Total: 30.51 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 6.28 Total: -4.76 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -5.53 Total: -127.59 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.21 2.21 -70.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034768466.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.951 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds