Wall clock time and date at job start Tue Mar 31 2020 19:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 C 1.50703 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.38045 * 126.28830 * 270.00151 * 4 3 2 6 6 C 1.47425 * 126.41891 * 0.02562 * 5 4 3 7 7 O 1.21606 * 119.99459 * 49.91787 * 6 5 4 8 8 N 1.34774 * 120.00213 * 229.91703 * 6 5 4 9 9 C 1.46923 * 120.63400 * 355.66519 * 8 6 5 10 10 C 1.53192 * 108.77432 * 126.36720 * 9 8 6 11 11 C 1.53041 * 109.30966 * 54.64065 * 10 9 8 12 12 H 1.09000 * 109.45699 * 178.60906 * 11 10 9 13 13 N 1.46499 * 109.46009 * 58.65217 * 11 10 9 14 14 C 1.36941 * 119.99730 * 85.00103 * 13 11 10 15 15 H 1.07998 * 120.00623 * 359.97438 * 14 13 11 16 16 C 1.38816 * 119.99633 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00156 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99893 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46822 * 59.99512 * 18 16 14 20 20 H 1.48497 * 109.47022 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47023 * 299.99954 * 18 16 14 22 22 C 1.53033 * 109.53774 * 298.62949 * 11 10 9 23 23 H 1.08999 * 109.52730 * 301.40420 * 22 11 10 24 24 C 1.53003 * 109.49685 * 181.31606 * 22 11 10 25 25 C 1.46924 * 120.62836 * 175.64761 * 8 6 5 26 26 C 1.41292 * 107.16519 * 179.76002 * 5 4 3 27 27 N 1.30444 * 108.02787 * 0.23928 * 26 5 4 28 28 N 1.34258 * 126.29413 * 90.17994 * 4 3 2 29 29 C 1.46504 * 125.75216 * 0.02949 * 28 4 3 30 30 H 1.08993 * 109.46990 * 59.99626 * 1 2 3 31 31 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46613 * 299.99840 * 1 2 3 33 33 H 1.09001 * 109.46613 * 240.00160 * 2 1 3 34 34 H 1.09000 * 109.46641 * 120.00259 * 2 1 3 35 35 H 1.09001 * 109.47223 * 60.00534 * 3 2 1 36 36 H 1.08993 * 109.47471 * 300.00079 * 3 2 1 37 37 H 1.09008 * 109.58387 * 6.58363 * 9 8 6 38 38 H 1.08994 * 109.70545 * 246.23086 * 9 8 6 39 39 H 1.09003 * 109.49568 * 174.59059 * 10 9 8 40 40 H 1.09001 * 109.49841 * 294.68824 * 10 9 8 41 41 H 0.96999 * 120.00162 * 264.99921 * 13 11 10 42 42 H 0.96999 * 120.00334 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47347 * 300.16351 * 24 22 11 44 44 H 1.09001 * 109.46843 * 60.16968 * 24 22 11 45 45 H 1.08998 * 109.46899 * 180.16182 * 24 22 11 46 46 H 1.08995 * 109.59021 * 353.41552 * 25 8 6 47 47 H 1.09002 * 109.58965 * 113.84288 * 25 8 6 48 48 H 1.08006 * 125.98706 * 180.23964 * 26 5 4 49 49 H 1.08994 * 109.47317 * 270.27877 * 29 28 4 50 50 H 1.09003 * 109.47203 * 30.27511 * 29 28 4 51 51 H 1.09000 * 109.47231 * 150.26906 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3646 1.4422 1.1117 6 6 3.9269 1.4414 2.5195 7 8 3.0992 0.6352 2.8984 8 7 4.4443 2.3342 3.3865 9 6 5.5129 3.2515 2.9681 10 6 5.0834 4.6870 3.2870 11 6 4.7135 4.7872 4.7686 12 1 4.4312 5.8134 5.0038 13 7 5.8651 4.3986 5.5866 14 6 6.8262 5.3227 5.8989 15 1 6.7354 6.3380 5.5420 16 6 7.9176 4.9543 6.6735 17 7 8.0285 3.7169 7.1081 18 14 9.2290 6.2147 7.0991 19 1 8.6128 7.3337 7.8564 20 1 10.2798 5.5744 7.9303 21 1 9.8364 6.7383 5.8492 22 6 3.5380 3.8539 5.0669 23 1 2.6883 4.1267 4.4411 24 6 3.1478 3.9792 6.5410 25 6 3.9499 2.4089 4.7681 26 6 5.6993 1.4366 0.6483 27 7 5.6739 1.4388 -0.6559 28 7 4.3414 1.4459 -1.0831 29 6 3.8892 1.4512 -2.4766 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 5.6822 3.1504 1.8960 38 1 6.4309 3.0165 3.5067 39 1 5.9054 5.3693 3.0702 40 1 4.2195 4.9522 2.6776 41 1 5.9468 3.4866 5.9069 42 1 8.7910 3.4595 7.6496 43 1 3.9981 3.7073 7.1664 44 1 2.8547 5.0074 6.7531 45 1 2.3124 3.3122 6.7537 46 1 3.0880 1.7519 4.8839 47 1 4.7391 2.1043 5.4556 48 1 6.5855 1.4313 1.2657 49 1 3.7718 0.4249 -2.8243 50 1 2.9331 1.9700 -2.5464 51 1 4.6261 1.9627 -3.0958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036090896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:30 Heat of formation + Delta-G solvation = 42.837388 kcal Electronic energy + Delta-G solvation = -30446.321211 eV Core-core repulsion = 26575.276802 eV Total energy + Delta-G solvation = -3871.044409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -41.59251 -39.54077 -37.45466 -35.46176 -34.17234 -33.44612 -32.66163 -31.33535 -30.73472 -29.11164 -27.82812 -26.68306 -25.87424 -24.85303 -23.47757 -22.19509 -21.83206 -21.54223 -20.51795 -19.08137 -18.11779 -17.31484 -17.10537 -16.17454 -15.82542 -15.57118 -15.08844 -14.87379 -14.48377 -14.38961 -14.21521 -13.92108 -13.76033 -13.44035 -13.38329 -13.21215 -12.86672 -12.79707 -12.66910 -12.48700 -12.34720 -12.09021 -11.64407 -11.50700 -11.46968 -11.30658 -11.12255 -10.96295 -10.87274 -10.81830 -10.73537 -10.44257 -10.37684 -10.19704 -9.79506 -9.54676 -9.50842 -9.40598 -8.89258 -8.54965 -8.07895 -6.94382 -5.76281 -3.04455 1.57247 2.25024 2.32462 3.18144 3.43675 3.48921 3.49537 3.56270 4.28979 4.33346 4.59774 4.64418 4.76625 4.87617 4.89732 5.05291 5.07157 5.16007 5.22869 5.31721 5.39847 5.43855 5.48690 5.51467 5.57395 5.62291 5.66012 5.72553 5.80350 5.85654 5.90819 5.99431 6.04184 6.12598 6.16240 6.17624 6.31015 6.37846 6.40996 6.49189 6.55097 6.72102 6.74858 6.75598 6.82861 6.99138 7.09103 7.52379 7.70614 7.86029 8.42408 8.55959 9.53899 10.11159 10.46397 11.46078 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003258 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.035068 B = 8591.450493 C = 9630.552250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.056 4.056 4 C 0.139 3.861 5 C -0.276 4.276 6 C 0.593 3.407 7 O -0.553 6.553 8 N -0.594 5.594 9 C 0.111 3.889 10 C -0.148 4.148 11 C 0.179 3.821 12 H 0.049 0.951 13 N -0.718 5.718 14 C -0.237 4.237 15 H 0.068 0.932 16 C -0.011 4.011 17 N -0.932 5.932 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.108 4.108 23 H 0.064 0.936 24 C -0.137 4.137 25 C 0.121 3.879 26 C 0.085 3.915 27 N -0.299 5.299 28 N -0.365 5.365 29 C 0.099 3.901 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.192 0.808 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.475 -4.545 -17.362 22.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.095 4.095 4 C 0.008 3.992 5 C -0.291 4.291 6 C 0.380 3.620 7 O -0.432 6.432 8 N -0.325 5.325 9 C -0.012 4.012 10 C -0.189 4.189 11 C 0.069 3.931 12 H 0.067 0.933 13 N -0.361 5.361 14 C -0.368 4.368 15 H 0.086 0.914 16 C -0.207 4.207 17 N -0.581 5.581 18 Si 0.735 3.265 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.128 4.128 23 H 0.082 0.918 24 C -0.195 4.195 25 C -0.001 4.001 26 C -0.102 4.102 27 N -0.119 5.119 28 N -0.145 5.145 29 C -0.043 4.043 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.208 0.792 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.100 -4.819 -18.342 23.049 hybrid contribution 0.661 0.569 0.976 1.309 sum -12.439 -4.250 -17.365 21.780 Atomic orbital electron populations 1.21738 0.95189 1.01898 1.01799 1.21473 0.96012 0.94886 1.03165 1.20359 0.86172 0.99152 1.03818 1.21297 0.94206 0.97418 0.86282 1.19978 0.93074 1.22385 0.93673 1.17268 0.80618 0.80316 0.83763 1.90714 1.34805 1.38866 1.78794 1.47951 1.37774 1.35210 1.11539 1.21853 0.90268 0.89342 0.99702 1.22503 1.00573 0.95853 0.99993 1.20207 0.87520 0.96096 0.89312 0.93301 1.42467 1.22042 1.11508 1.60052 1.19169 0.99606 0.92026 1.26011 0.91373 1.24691 0.98844 0.96307 1.00899 1.69633 1.31448 1.16361 1.40623 0.86326 0.81690 0.80578 0.77912 1.21423 1.21827 1.21389 1.21699 0.98361 0.95415 0.97295 0.91759 1.21665 1.01257 1.00988 0.95577 1.21629 1.00067 0.96970 0.81444 1.24072 0.97282 0.97170 0.91686 1.77183 0.95797 1.25609 1.13263 1.48221 1.04042 1.56191 1.06049 1.21894 1.01120 1.03555 0.77697 0.93021 0.92473 0.92252 0.92553 0.89850 0.88872 0.90751 0.90711 0.89832 0.90964 0.93558 0.78058 0.93492 0.91024 0.92899 0.93799 0.89829 0.90705 0.79157 0.90541 0.89422 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.12 -1.12 5.92 -26.73 -0.16 -1.28 16 3 C -0.06 -0.56 5.18 -27.88 -0.14 -0.70 16 4 C 0.14 1.73 6.26 -81.60 -0.51 1.22 16 5 C -0.28 -4.08 5.11 -105.07 -0.54 -4.62 16 6 C 0.59 9.94 7.20 -12.52 -0.09 9.85 16 7 O -0.55 -10.39 15.98 5.27 0.08 -10.31 16 8 N -0.59 -9.89 2.97 -174.04 -0.52 -10.41 16 9 C 0.11 1.83 5.65 -3.71 -0.02 1.81 16 10 C -0.15 -2.51 5.78 -26.61 -0.15 -2.67 16 11 C 0.18 3.35 2.53 -67.89 -0.17 3.18 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.72 -16.52 3.64 -53.39 -0.19 -16.71 16 14 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 15 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 16 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.09 13.06 55.49 0.72 -26.37 16 18 Si 0.90 21.85 29.55 -169.99 -5.02 16.83 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.11 -1.77 2.67 -90.50 -0.24 -2.01 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 C -0.14 -2.20 9.06 37.16 0.34 -1.87 16 25 C 0.12 2.07 5.41 -3.71 -0.02 2.05 16 26 C 0.08 1.20 9.66 -16.98 -0.16 1.03 16 27 N -0.30 -4.16 12.50 30.86 0.39 -3.78 16 28 N -0.37 -4.23 3.98 -63.34 -0.25 -4.48 16 29 C 0.10 0.66 11.24 59.85 0.67 1.33 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 35 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 36 H 0.07 0.54 7.05 -51.93 -0.37 0.17 16 37 H 0.07 1.12 4.57 -51.92 -0.24 0.89 16 38 H 0.08 1.59 7.74 -51.93 -0.40 1.19 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.38 9.47 5.93 -40.82 -0.24 9.23 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 1.34 7.53 -51.93 -0.39 0.95 16 44 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 1.42 7.03 -51.93 -0.37 1.05 16 47 H 0.07 1.42 6.64 -51.93 -0.34 1.07 16 48 H 0.19 2.43 7.65 -52.48 -0.40 2.03 16 49 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.09 0.39 7.02 -51.93 -0.36 0.03 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -31.57 400.58 -8.38 -39.95 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -8.54 Total: 9.44 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.08 Total: -0.20 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.15 Total: -61.74 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.57 -8.38 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036090896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.788 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds