Wall clock time and date at job start Tue Mar 31 2020 19:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 C 1.50703 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.38045 * 126.28830 * 270.00151 * 4 3 2 6 6 C 1.47425 * 126.41891 * 0.02562 * 5 4 3 7 7 O 1.21606 * 119.99459 * 49.91787 * 6 5 4 8 8 N 1.34774 * 120.00213 * 229.91703 * 6 5 4 9 9 C 1.46923 * 120.63400 * 355.66519 * 8 6 5 10 10 C 1.53192 * 108.77432 * 126.36720 * 9 8 6 11 11 C 1.53041 * 109.30966 * 54.64065 * 10 9 8 12 12 H 1.09000 * 109.45699 * 178.60906 * 11 10 9 13 13 N 1.46499 * 109.46009 * 58.65217 * 11 10 9 14 14 C 1.36941 * 119.99730 * 85.00103 * 13 11 10 15 15 H 1.07998 * 120.00623 * 359.97438 * 14 13 11 16 16 C 1.38816 * 119.99633 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00156 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99893 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46822 * 59.99512 * 18 16 14 20 20 H 1.48497 * 109.47022 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47023 * 299.99954 * 18 16 14 22 22 C 1.53033 * 109.53774 * 298.62949 * 11 10 9 23 23 H 1.08999 * 109.52730 * 301.40420 * 22 11 10 24 24 C 1.53003 * 109.49685 * 181.31606 * 22 11 10 25 25 C 1.46924 * 120.62836 * 175.64761 * 8 6 5 26 26 C 1.41292 * 107.16519 * 179.76002 * 5 4 3 27 27 N 1.30444 * 108.02787 * 0.23928 * 26 5 4 28 28 N 1.34258 * 126.29413 * 90.17994 * 4 3 2 29 29 C 1.46504 * 125.75216 * 0.02949 * 28 4 3 30 30 H 1.08993 * 109.46990 * 59.99626 * 1 2 3 31 31 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46613 * 299.99840 * 1 2 3 33 33 H 1.09001 * 109.46613 * 240.00160 * 2 1 3 34 34 H 1.09000 * 109.46641 * 120.00259 * 2 1 3 35 35 H 1.09001 * 109.47223 * 60.00534 * 3 2 1 36 36 H 1.08993 * 109.47471 * 300.00079 * 3 2 1 37 37 H 1.09008 * 109.58387 * 6.58363 * 9 8 6 38 38 H 1.08994 * 109.70545 * 246.23086 * 9 8 6 39 39 H 1.09003 * 109.49568 * 174.59059 * 10 9 8 40 40 H 1.09001 * 109.49841 * 294.68824 * 10 9 8 41 41 H 0.96999 * 120.00162 * 264.99921 * 13 11 10 42 42 H 0.96999 * 120.00334 * 180.02562 * 17 16 14 43 43 H 1.08996 * 109.47347 * 300.16351 * 24 22 11 44 44 H 1.09001 * 109.46843 * 60.16968 * 24 22 11 45 45 H 1.08998 * 109.46899 * 180.16182 * 24 22 11 46 46 H 1.08995 * 109.59021 * 353.41552 * 25 8 6 47 47 H 1.09002 * 109.58965 * 113.84288 * 25 8 6 48 48 H 1.08006 * 125.98706 * 180.23964 * 26 5 4 49 49 H 1.08994 * 109.47317 * 270.27877 * 29 28 4 50 50 H 1.09003 * 109.47203 * 30.27511 * 29 28 4 51 51 H 1.09000 * 109.47231 * 150.26906 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3646 1.4422 1.1117 6 6 3.9269 1.4414 2.5195 7 8 3.0992 0.6352 2.8984 8 7 4.4443 2.3342 3.3865 9 6 5.5129 3.2515 2.9681 10 6 5.0834 4.6870 3.2870 11 6 4.7135 4.7872 4.7686 12 1 4.4312 5.8134 5.0038 13 7 5.8651 4.3986 5.5866 14 6 6.8262 5.3227 5.8989 15 1 6.7354 6.3380 5.5420 16 6 7.9176 4.9543 6.6735 17 7 8.0285 3.7169 7.1081 18 14 9.2290 6.2147 7.0991 19 1 8.6128 7.3337 7.8564 20 1 10.2798 5.5744 7.9303 21 1 9.8364 6.7383 5.8492 22 6 3.5380 3.8539 5.0669 23 1 2.6883 4.1267 4.4411 24 6 3.1478 3.9792 6.5410 25 6 3.9499 2.4089 4.7681 26 6 5.6993 1.4366 0.6483 27 7 5.6739 1.4388 -0.6559 28 7 4.3414 1.4459 -1.0831 29 6 3.8892 1.4512 -2.4766 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 5.6822 3.1504 1.8960 38 1 6.4309 3.0165 3.5067 39 1 5.9054 5.3693 3.0702 40 1 4.2195 4.9522 2.6776 41 1 5.9468 3.4866 5.9069 42 1 8.7910 3.4595 7.6496 43 1 3.9981 3.7073 7.1664 44 1 2.8547 5.0074 6.7531 45 1 2.3124 3.3122 6.7537 46 1 3.0880 1.7519 4.8839 47 1 4.7391 2.1043 5.4556 48 1 6.5855 1.4313 1.2657 49 1 3.7718 0.4249 -2.8243 50 1 2.9331 1.9700 -2.5464 51 1 4.6261 1.9627 -3.0958 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036090896.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:28 Heat of formation + Delta-G solvation = 24.391649 kcal Electronic energy + Delta-G solvation = -30447.121079 eV Core-core repulsion = 26575.276802 eV Total energy + Delta-G solvation = -3871.844276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.60859 -40.89294 -38.89652 -36.29990 -35.72177 -34.64470 -33.97831 -32.94744 -31.65633 -30.87756 -28.79541 -27.43520 -27.18712 -26.32302 -25.30338 -23.22005 -23.03314 -22.62690 -21.53130 -20.31277 -19.49988 -19.19420 -18.29942 -17.28838 -16.91769 -16.62720 -16.53692 -15.94157 -15.93389 -15.71131 -15.51709 -15.35849 -14.84493 -14.74059 -14.55019 -14.30675 -14.19142 -13.85132 -13.61525 -13.56435 -13.43750 -13.03159 -12.97679 -12.86368 -12.80243 -12.62202 -12.44321 -12.37395 -12.16561 -12.14846 -11.93637 -11.92980 -11.83517 -11.58298 -11.54011 -11.13066 -10.89966 -10.77646 -10.34545 -9.66685 -9.43386 -8.89092 -7.85979 -5.12007 0.59374 1.18231 1.43442 1.50864 1.51975 1.57829 1.93070 2.26388 2.61758 3.44939 3.45649 3.48064 3.79389 3.88119 3.92423 4.01608 4.09021 4.12711 4.14486 4.20244 4.35481 4.35841 4.43403 4.43907 4.48048 4.60090 4.63466 4.66014 4.68190 4.76496 4.78297 4.89718 4.90319 4.93345 5.01088 5.07930 5.16830 5.18892 5.25250 5.30481 5.32122 5.35175 5.39974 5.44769 5.52164 5.62606 5.70738 5.91983 6.35715 6.50365 6.54057 7.23454 7.43252 8.20063 8.43767 9.37119 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016060 B = 0.003258 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.035068 B = 8591.450493 C = 9630.552250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.053 4.053 4 C 0.150 3.850 5 C -0.308 4.308 6 C 0.595 3.405 7 O -0.577 6.577 8 N -0.594 5.594 9 C 0.122 3.878 10 C -0.140 4.140 11 C 0.174 3.826 12 H 0.047 0.953 13 N -0.724 5.724 14 C -0.227 4.227 15 H 0.074 0.926 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.963 3.037 19 H -0.282 1.282 20 H -0.302 1.302 21 H -0.280 1.280 22 C -0.097 4.097 23 H 0.087 0.913 24 C -0.131 4.131 25 C 0.126 3.874 26 C 0.076 3.924 27 N -0.317 5.317 28 N -0.356 5.356 29 C 0.084 3.916 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.374 0.626 42 H 0.247 0.753 43 H 0.039 0.961 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.048 0.952 48 H 0.192 0.808 49 H 0.093 0.907 50 H 0.118 0.882 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 -3.497 -20.217 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.092 4.092 4 C 0.017 3.983 5 C -0.323 4.323 6 C 0.384 3.616 7 O -0.458 6.458 8 N -0.325 5.325 9 C 0.000 4.000 10 C -0.180 4.180 11 C 0.065 3.935 12 H 0.065 0.935 13 N -0.365 5.365 14 C -0.359 4.359 15 H 0.092 0.908 16 C -0.265 4.265 17 N -0.620 5.620 18 Si 0.793 3.207 19 H -0.208 1.208 20 H -0.229 1.229 21 H -0.207 1.207 22 C -0.116 4.116 23 H 0.105 0.895 24 C -0.189 4.189 25 C 0.004 3.996 26 C -0.110 4.110 27 N -0.137 5.137 28 N -0.136 5.136 29 C -0.055 4.055 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.207 0.793 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.209 0.791 49 H 0.111 0.889 50 H 0.136 0.864 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.138 -3.735 -21.254 26.360 hybrid contribution 1.181 0.208 1.739 2.112 sum -13.957 -3.527 -19.515 24.251 Atomic orbital electron populations 1.21713 0.93667 1.02380 1.02469 1.21398 0.97258 0.94388 1.01997 1.20468 0.84265 0.99540 1.04962 1.21640 0.95296 0.95512 0.85855 1.19921 0.93924 1.25367 0.93104 1.17554 0.79981 0.79483 0.84547 1.90695 1.36057 1.39629 1.79430 1.47957 1.37775 1.35393 1.11351 1.21684 0.88968 0.89096 1.00301 1.22376 1.01183 0.95733 0.98742 1.20425 0.86909 0.96436 0.89737 0.93451 1.42581 1.22792 1.10560 1.60586 1.19527 0.99587 0.92577 1.24178 0.90774 1.25375 1.01187 0.97840 1.02097 1.69794 1.31892 1.18152 1.42159 0.85366 0.79197 0.78534 0.77577 1.20826 1.22901 1.20660 1.21618 0.97937 0.94140 0.97952 0.89498 1.21598 1.00715 1.01917 0.94648 1.21497 0.99181 0.97526 0.81441 1.24114 0.97284 0.97571 0.92021 1.77128 0.97515 1.26105 1.12952 1.48609 1.03055 1.54350 1.07563 1.22389 1.02732 1.05307 0.75067 0.90661 0.92167 0.93221 0.91213 0.93533 0.90245 0.86998 0.88883 0.92928 0.91865 0.91075 0.79267 0.94400 0.94228 0.92165 0.91566 0.89594 0.93337 0.79092 0.88875 0.86397 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.11 -1.92 5.92 30.60 0.18 -1.74 16 3 C -0.05 -0.91 5.18 29.85 0.15 -0.76 16 4 C 0.15 3.44 6.26 42.14 0.26 3.71 16 5 C -0.31 -8.93 5.11 -20.15 -0.10 -9.03 16 6 C 0.60 20.03 7.20 86.66 0.62 20.65 16 7 O -0.58 -21.99 15.98 -4.05 -0.06 -22.06 16 8 N -0.59 -19.95 2.97 -822.78 -2.45 -22.40 16 9 C 0.12 4.06 5.65 86.36 0.49 4.55 16 10 C -0.14 -4.59 5.78 30.67 0.18 -4.42 16 11 C 0.17 6.42 2.53 45.02 0.11 6.53 16 12 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 13 N -0.72 -33.97 3.64 -322.82 -1.18 -35.14 16 14 C -0.23 -11.93 9.93 84.03 0.83 -11.10 16 15 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 17 N -0.97 -58.20 13.06 21.65 0.28 -57.91 16 18 Si 0.96 45.58 29.55 68.60 2.03 47.61 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 C -0.10 -3.10 2.67 -10.71 -0.03 -3.13 16 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 24 C -0.13 -4.13 9.06 71.98 0.65 -3.48 16 25 C 0.13 4.38 5.41 86.37 0.47 4.85 16 26 C 0.08 2.14 9.66 85.65 0.83 2.96 16 27 N -0.32 -8.42 12.50 -56.27 -0.70 -9.12 16 28 N -0.36 -7.34 3.98 -354.30 -1.41 -8.75 16 29 C 0.08 0.80 11.24 127.77 1.44 2.24 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.15 7.67 -2.39 -0.02 1.14 16 35 H 0.08 1.63 7.96 -2.39 -0.02 1.61 16 36 H 0.11 1.07 7.05 -2.39 -0.02 1.05 16 37 H 0.09 2.77 4.57 -2.38 -0.01 2.76 16 38 H 0.05 2.08 7.74 -2.39 -0.02 2.07 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.37 19.21 5.93 -92.71 -0.55 18.66 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 44 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.09 2.94 7.03 -2.39 -0.02 2.92 16 47 H 0.05 1.94 6.64 -2.39 -0.02 1.93 16 48 H 0.19 5.04 7.65 -2.91 -0.02 5.02 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.12 0.44 7.02 -2.39 -0.02 0.42 16 51 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.07 400.58 4.15 -65.92 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.37 Total: 34.80 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 7.27 Total: 7.04 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -5.45 Total: -133.32 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.06 Total: -22.06 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.07 4.15 -65.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036090896.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.315 kcal (2) G-P(sol) polarization free energy of solvation -70.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds