Wall clock time and date at job start Tue Mar 31 2020 19:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47107 * 2 1 4 4 C 1.50700 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.38041 * 126.28822 * 269.71220 * 4 3 2 6 6 C 1.47426 * 126.41595 * 359.97438 * 5 4 3 7 7 O 1.21601 * 120.00356 * 39.93904 * 6 5 4 8 8 N 1.34781 * 120.00004 * 219.94633 * 6 5 4 9 9 C 1.46923 * 120.62746 * 5.47760 * 8 6 5 10 10 C 1.53194 * 108.77092 * 126.37390 * 9 8 6 11 11 C 1.53044 * 109.31313 * 54.63387 * 10 9 8 12 12 H 1.09001 * 109.45702 * 58.64578 * 11 10 9 13 13 N 1.46509 * 109.45945 * 178.61293 * 11 10 9 14 14 C 1.36940 * 119.99998 * 275.00044 * 13 11 10 15 15 H 1.07999 * 119.99846 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99883 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47329 * 59.99674 * 18 16 14 20 20 H 1.48507 * 109.46891 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47114 * 299.99428 * 18 16 14 22 22 C 1.53039 * 109.54079 * 298.63530 * 11 10 9 23 23 H 1.08996 * 109.49268 * 301.41322 * 22 11 10 24 24 C 1.52996 * 109.49635 * 181.31500 * 22 11 10 25 25 C 1.46924 * 120.63141 * 185.20909 * 8 6 5 26 26 C 1.41290 * 107.17075 * 179.84527 * 5 4 3 27 27 N 1.30449 * 108.02331 * 0.42131 * 26 5 4 28 28 N 1.34252 * 126.29468 * 90.02347 * 4 3 2 29 29 C 1.46506 * 125.75220 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.46946 * 60.00089 * 1 2 3 31 31 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47361 * 300.00336 * 1 2 3 33 33 H 1.09000 * 109.46981 * 239.99877 * 2 1 3 34 34 H 1.08993 * 109.46830 * 120.00184 * 2 1 3 35 35 H 1.09001 * 109.47146 * 299.99789 * 3 2 1 36 36 H 1.08994 * 109.47285 * 59.99617 * 3 2 1 37 37 H 1.09002 * 109.59003 * 246.15521 * 9 8 6 38 38 H 1.08993 * 109.58990 * 6.44654 * 9 8 6 39 39 H 1.09002 * 109.50184 * 174.58630 * 10 9 8 40 40 H 1.09004 * 109.50027 * 294.65314 * 10 9 8 41 41 H 0.96997 * 119.99922 * 95.00333 * 13 11 10 42 42 H 0.97001 * 119.99847 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47261 * 60.00255 * 24 22 11 44 44 H 1.09003 * 109.46609 * 180.02562 * 24 22 11 45 45 H 1.08996 * 109.47510 * 299.99644 * 24 22 11 46 46 H 1.09002 * 109.58837 * 353.41084 * 25 8 6 47 47 H 1.09000 * 109.58975 * 113.83963 * 25 8 6 48 48 H 1.08001 * 125.99329 * 180.16145 * 26 5 4 49 49 H 1.09004 * 109.46919 * 90.00620 * 29 28 4 50 50 H 1.09004 * 109.46943 * 209.99763 * 29 28 4 51 51 H 1.08994 * 109.47632 * 330.00354 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3645 1.4479 1.1117 6 6 3.9268 1.4553 2.5195 7 8 2.9750 0.7813 2.8638 8 7 4.5815 2.2092 3.4248 9 6 5.6555 3.1194 3.0045 10 6 5.3472 4.5234 3.5342 11 6 5.1353 4.4579 5.0484 12 1 6.0302 4.0557 5.5232 13 7 4.8729 5.8043 5.5632 14 6 5.9170 6.6328 5.8772 15 1 6.9339 6.2939 5.7449 16 6 5.6683 7.9082 6.3654 17 7 4.4290 8.3209 6.5271 18 14 7.0926 9.0387 6.7930 19 1 7.9194 9.2730 5.5821 20 1 6.5641 10.3343 7.2905 21 1 7.9264 8.4073 7.8472 22 6 3.9421 3.5515 5.3596 23 1 3.0518 3.9395 4.8647 24 6 3.7108 3.5128 6.8715 25 6 4.2307 2.1407 4.8499 26 6 5.6993 1.4420 0.6484 27 7 5.6738 1.4427 -0.6558 28 7 4.3413 1.4431 -1.0830 29 6 3.8891 1.4433 -2.4765 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 6.6062 2.7758 3.4122 38 1 5.7110 3.1412 1.9162 39 1 6.1824 5.1876 3.3121 40 1 4.4439 4.9024 3.0560 41 1 3.9596 6.1087 5.6817 42 1 4.2552 9.2123 6.8679 43 1 3.5057 4.5202 7.2336 44 1 2.8612 2.8668 7.0926 45 1 4.6010 3.1234 7.3654 46 1 3.3448 1.5188 4.9787 47 1 5.0629 1.7155 5.4111 48 1 6.5854 1.4416 1.2658 49 1 3.7767 2.4711 -2.8219 50 1 4.6237 0.9299 -3.0970 51 1 2.9306 0.9292 -2.5477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036090899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:44 Heat of formation + Delta-G solvation = 39.820424 kcal Electronic energy + Delta-G solvation = -29976.338423 eV Core-core repulsion = 26105.163189 eV Total energy + Delta-G solvation = -3871.175234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70762 -39.61218 -37.45208 -35.53017 -34.49350 -33.57270 -32.67985 -31.41824 -30.80850 -29.27080 -27.90737 -26.73649 -25.95387 -24.92770 -23.09856 -22.13426 -21.69780 -21.61231 -20.62651 -19.58552 -18.66142 -17.32345 -17.01805 -16.25350 -15.90432 -15.73822 -15.11662 -14.87515 -14.78001 -14.55947 -14.04733 -13.82402 -13.76162 -13.57091 -13.42789 -13.25170 -12.93038 -12.89285 -12.79032 -12.43475 -12.34788 -12.13329 -11.71917 -11.65356 -11.52006 -11.47031 -11.12520 -11.06329 -10.90433 -10.85602 -10.75995 -10.57026 -10.34706 -10.21207 -9.73191 -9.66274 -9.57957 -9.51138 -8.88012 -8.69187 -8.31228 -6.93916 -5.75811 -3.04100 1.45417 2.14159 2.16418 3.09544 3.43233 3.43958 3.48664 3.49259 4.21722 4.24690 4.59210 4.60904 4.74706 4.78587 4.82600 4.94788 5.03716 5.10055 5.17332 5.20428 5.31445 5.36526 5.40493 5.45945 5.48249 5.55668 5.57628 5.65405 5.71825 5.74508 5.82671 5.87378 6.01764 6.04106 6.12084 6.14877 6.19869 6.27793 6.37303 6.45825 6.48950 6.61380 6.65559 6.72962 6.86863 6.98207 7.11032 7.40806 7.65930 7.69909 8.40819 8.42715 9.53918 10.12105 10.46982 11.46731 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002881 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.499962 B = 9716.748673 C =10445.701688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.059 4.059 4 C 0.149 3.851 5 C -0.284 4.284 6 C 0.595 3.405 7 O -0.550 6.550 8 N -0.601 5.601 9 C 0.104 3.896 10 C -0.150 4.150 11 C 0.184 3.816 12 H 0.048 0.952 13 N -0.721 5.721 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.286 1.286 22 C -0.110 4.110 23 H 0.068 0.932 24 C -0.135 4.135 25 C 0.123 3.877 26 C 0.083 3.917 27 N -0.299 5.299 28 N -0.364 5.364 29 C 0.097 3.903 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.191 0.809 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.790 -17.276 -15.917 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.098 4.098 4 C 0.017 3.983 5 C -0.298 4.298 6 C 0.384 3.616 7 O -0.428 6.428 8 N -0.332 5.332 9 C -0.020 4.020 10 C -0.191 4.191 11 C 0.074 3.926 12 H 0.066 0.934 13 N -0.361 5.361 14 C -0.368 4.368 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.130 4.130 23 H 0.087 0.913 24 C -0.193 4.193 25 C 0.000 4.000 26 C -0.104 4.104 27 N -0.118 5.118 28 N -0.143 5.143 29 C -0.045 4.045 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.083 0.917 48 H 0.207 0.793 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.446 -17.519 -16.909 24.591 hybrid contribution 0.267 1.060 0.854 1.387 sum -3.179 -16.459 -16.055 23.212 Atomic orbital electron populations 1.21740 0.95095 1.01883 1.01968 1.21450 0.96139 0.94809 1.02917 1.20402 0.85963 0.99231 1.04185 1.21393 0.94394 0.96256 0.86262 1.19964 0.93007 1.23229 0.93626 1.17252 0.81737 0.78939 0.83709 1.90720 1.27966 1.43712 1.80441 1.47947 1.36618 1.41153 1.07513 1.22024 0.89331 0.90473 1.00156 1.22663 1.02304 0.94008 1.00150 1.20199 0.94841 0.86699 0.90866 0.93445 1.42406 1.06614 1.10353 1.76708 1.19176 0.87830 0.94285 1.35507 0.91304 1.24719 0.96163 0.97701 1.02326 1.69649 1.17431 1.19029 1.52026 0.86307 0.81627 0.80320 0.78156 1.21359 1.21787 1.21319 1.21655 0.99995 0.94512 0.96824 0.91335 1.21653 1.00328 1.02901 0.94446 1.21596 1.01342 0.97740 0.79331 1.24058 0.97201 0.97349 0.91763 1.77180 0.95962 1.25463 1.13237 1.48255 1.04005 1.55904 1.06182 1.21941 1.01185 1.03801 0.77532 0.92972 0.92494 0.92118 0.92685 0.89967 0.90667 0.88450 0.91655 0.90003 0.90739 0.92367 0.78252 0.93514 0.90815 0.93851 0.93089 0.89337 0.91700 0.79263 0.90307 0.88906 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 3 C -0.06 -0.57 4.69 -27.89 -0.13 -0.70 16 4 C 0.15 1.75 6.25 -81.61 -0.51 1.24 16 5 C -0.28 -3.79 5.20 -105.07 -0.55 -4.34 16 6 C 0.60 9.01 7.31 -12.52 -0.09 8.92 16 7 O -0.55 -9.46 15.31 5.28 0.08 -9.38 16 8 N -0.60 -8.72 2.98 -174.30 -0.52 -9.24 16 9 C 0.10 1.41 5.48 -3.71 -0.02 1.39 16 10 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 11 C 0.18 3.50 2.20 -67.88 -0.15 3.35 16 12 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 13 N -0.72 -17.34 4.41 -53.38 -0.24 -17.58 16 14 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 15 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 18 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.11 -1.83 2.44 -90.72 -0.22 -2.05 16 23 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 24 C -0.14 -2.21 9.03 37.16 0.34 -1.88 16 25 C 0.12 1.80 5.70 -3.93 -0.02 1.78 16 26 C 0.08 1.01 9.62 -16.98 -0.16 0.85 16 27 N -0.30 -3.76 12.50 30.86 0.39 -3.37 16 28 N -0.36 -3.92 3.98 -63.34 -0.25 -4.17 16 29 C 0.10 0.60 11.06 59.85 0.66 1.26 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.96 7.62 -51.93 -0.40 0.57 16 35 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 36 H 0.10 1.12 7.71 -51.93 -0.40 0.72 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.05 4.76 -51.93 -0.25 0.80 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.38 9.98 7.51 -40.82 -0.31 9.68 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.19 1.86 7.34 -52.49 -0.39 1.47 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.09 0.37 7.62 -51.93 -0.40 -0.03 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -32.61 403.67 -8.54 -41.15 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.74 Total: 8.32 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.04 Total: -1.86 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.10 Total: -61.40 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.61 -8.54 -41.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036090899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.966 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds