Wall clock time and date at job start Tue Mar 31 2020 19:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47107 * 2 1 4 4 C 1.50700 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.38041 * 126.28822 * 269.71220 * 4 3 2 6 6 C 1.47426 * 126.41595 * 359.97438 * 5 4 3 7 7 O 1.21601 * 120.00356 * 39.93904 * 6 5 4 8 8 N 1.34781 * 120.00004 * 219.94633 * 6 5 4 9 9 C 1.46923 * 120.62746 * 5.47760 * 8 6 5 10 10 C 1.53194 * 108.77092 * 126.37390 * 9 8 6 11 11 C 1.53044 * 109.31313 * 54.63387 * 10 9 8 12 12 H 1.09001 * 109.45702 * 58.64578 * 11 10 9 13 13 N 1.46509 * 109.45945 * 178.61293 * 11 10 9 14 14 C 1.36940 * 119.99998 * 275.00044 * 13 11 10 15 15 H 1.07999 * 119.99846 * 0.02562 * 14 13 11 16 16 C 1.38813 * 119.99883 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99776 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99834 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47329 * 59.99674 * 18 16 14 20 20 H 1.48507 * 109.46891 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47114 * 299.99428 * 18 16 14 22 22 C 1.53039 * 109.54079 * 298.63530 * 11 10 9 23 23 H 1.08996 * 109.49268 * 301.41322 * 22 11 10 24 24 C 1.52996 * 109.49635 * 181.31500 * 22 11 10 25 25 C 1.46924 * 120.63141 * 185.20909 * 8 6 5 26 26 C 1.41290 * 107.17075 * 179.84527 * 5 4 3 27 27 N 1.30449 * 108.02331 * 0.42131 * 26 5 4 28 28 N 1.34252 * 126.29468 * 90.02347 * 4 3 2 29 29 C 1.46506 * 125.75220 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.46946 * 60.00089 * 1 2 3 31 31 H 1.08996 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47361 * 300.00336 * 1 2 3 33 33 H 1.09000 * 109.46981 * 239.99877 * 2 1 3 34 34 H 1.08993 * 109.46830 * 120.00184 * 2 1 3 35 35 H 1.09001 * 109.47146 * 299.99789 * 3 2 1 36 36 H 1.08994 * 109.47285 * 59.99617 * 3 2 1 37 37 H 1.09002 * 109.59003 * 246.15521 * 9 8 6 38 38 H 1.08993 * 109.58990 * 6.44654 * 9 8 6 39 39 H 1.09002 * 109.50184 * 174.58630 * 10 9 8 40 40 H 1.09004 * 109.50027 * 294.65314 * 10 9 8 41 41 H 0.96997 * 119.99922 * 95.00333 * 13 11 10 42 42 H 0.97001 * 119.99847 * 180.02562 * 17 16 14 43 43 H 1.08999 * 109.47261 * 60.00255 * 24 22 11 44 44 H 1.09003 * 109.46609 * 180.02562 * 24 22 11 45 45 H 1.08996 * 109.47510 * 299.99644 * 24 22 11 46 46 H 1.09002 * 109.58837 * 353.41084 * 25 8 6 47 47 H 1.09000 * 109.58975 * 113.83963 * 25 8 6 48 48 H 1.08001 * 125.99329 * 180.16145 * 26 5 4 49 49 H 1.09004 * 109.46919 * 90.00620 * 29 28 4 50 50 H 1.09004 * 109.46943 * 209.99763 * 29 28 4 51 51 H 1.08994 * 109.47632 * 330.00354 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3645 1.4479 1.1117 6 6 3.9268 1.4553 2.5195 7 8 2.9750 0.7813 2.8638 8 7 4.5815 2.2092 3.4248 9 6 5.6555 3.1194 3.0045 10 6 5.3472 4.5234 3.5342 11 6 5.1353 4.4579 5.0484 12 1 6.0302 4.0557 5.5232 13 7 4.8729 5.8043 5.5632 14 6 5.9170 6.6328 5.8772 15 1 6.9339 6.2939 5.7449 16 6 5.6683 7.9082 6.3654 17 7 4.4290 8.3209 6.5271 18 14 7.0926 9.0387 6.7930 19 1 7.9194 9.2730 5.5821 20 1 6.5641 10.3343 7.2905 21 1 7.9264 8.4073 7.8472 22 6 3.9421 3.5515 5.3596 23 1 3.0518 3.9395 4.8647 24 6 3.7108 3.5128 6.8715 25 6 4.2307 2.1407 4.8499 26 6 5.6993 1.4420 0.6484 27 7 5.6738 1.4427 -0.6558 28 7 4.3413 1.4431 -1.0830 29 6 3.8891 1.4433 -2.4765 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 6.6062 2.7758 3.4122 38 1 5.7110 3.1412 1.9162 39 1 6.1824 5.1876 3.3121 40 1 4.4439 4.9024 3.0560 41 1 3.9596 6.1087 5.6817 42 1 4.2552 9.2123 6.8679 43 1 3.5057 4.5202 7.2336 44 1 2.8612 2.8668 7.0926 45 1 4.6010 3.1234 7.3654 46 1 3.3448 1.5188 4.9787 47 1 5.0629 1.7155 5.4111 48 1 6.5854 1.4416 1.2658 49 1 3.7767 2.4711 -2.8219 50 1 4.6237 0.9299 -3.0970 51 1 2.9306 0.9292 -2.5477 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036090899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:38 Heat of formation + Delta-G solvation = 20.090068 kcal Electronic energy + Delta-G solvation = -29977.193996 eV Core-core repulsion = 26105.163189 eV Total energy + Delta-G solvation = -3872.030807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -42.60786 -40.82747 -38.82127 -36.40981 -35.94501 -34.66860 -33.96238 -33.02172 -31.66637 -30.97404 -28.81863 -27.45180 -27.17569 -26.51037 -24.64869 -23.07563 -23.00740 -22.61302 -21.59260 -20.92523 -19.75337 -19.01661 -18.30752 -17.27682 -16.92563 -16.71905 -16.57579 -15.99871 -15.79054 -15.65364 -15.47023 -15.37228 -14.93566 -14.70782 -14.52883 -14.32773 -14.12151 -13.76686 -13.71260 -13.50689 -13.40544 -13.14416 -13.06714 -12.86184 -12.80120 -12.69914 -12.48687 -12.37683 -12.18948 -12.18677 -12.02411 -11.92638 -11.79381 -11.63601 -11.59311 -11.11834 -10.91535 -10.77271 -10.34839 -9.71691 -9.46084 -8.93754 -7.89232 -5.16586 0.55425 1.18370 1.42023 1.49288 1.51478 1.57202 1.97166 2.33153 2.59645 3.43101 3.44604 3.46343 3.78148 3.83382 3.86941 3.97562 4.07096 4.11414 4.13736 4.19097 4.36474 4.38329 4.41294 4.41785 4.46734 4.56657 4.59731 4.64947 4.71632 4.75502 4.82320 4.83391 4.88146 4.89931 4.91907 5.01142 5.06027 5.16750 5.22792 5.32301 5.34772 5.41376 5.42574 5.45216 5.54080 5.59225 5.69964 5.89093 6.32147 6.47718 6.54449 7.24629 7.38594 8.15191 8.38514 9.34286 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002881 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.499962 B = 9716.748673 C =10445.701688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.056 4.056 4 C 0.149 3.851 5 C -0.313 4.313 6 C 0.595 3.405 7 O -0.576 6.576 8 N -0.602 5.602 9 C 0.115 3.885 10 C -0.140 4.140 11 C 0.181 3.819 12 H 0.051 0.949 13 N -0.731 5.731 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.077 4.077 17 N -0.972 5.972 18 Si 0.968 3.032 19 H -0.279 1.279 20 H -0.301 1.301 21 H -0.278 1.278 22 C -0.099 4.099 23 H 0.049 0.951 24 C -0.129 4.129 25 C 0.130 3.870 26 C 0.083 3.917 27 N -0.318 5.318 28 N -0.359 5.359 29 C 0.084 3.916 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.370 0.630 42 H 0.248 0.752 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.209 0.791 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 -18.743 -17.788 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.095 4.095 4 C 0.016 3.984 5 C -0.328 4.328 6 C 0.385 3.615 7 O -0.457 6.457 8 N -0.333 5.333 9 C -0.008 4.008 10 C -0.181 4.181 11 C 0.072 3.928 12 H 0.069 0.931 13 N -0.370 5.370 14 C -0.362 4.362 15 H 0.096 0.904 16 C -0.269 4.269 17 N -0.623 5.623 18 Si 0.797 3.203 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.205 1.205 22 C -0.120 4.120 23 H 0.068 0.932 24 C -0.187 4.187 25 C 0.007 3.993 26 C -0.103 4.103 27 N -0.138 5.138 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.201 0.799 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.225 0.775 49 H 0.110 0.890 50 H 0.121 0.879 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.415 -19.029 -18.824 26.876 hybrid contribution -0.089 1.435 1.349 1.972 sum -2.503 -17.594 -17.476 24.924 Atomic orbital electron populations 1.21723 0.94000 1.02430 1.02245 1.21370 0.97010 0.94085 1.02176 1.20444 0.84841 0.99753 1.04496 1.21668 0.95206 0.95180 0.86341 1.19972 0.94122 1.25632 0.93026 1.17524 0.81149 0.78403 0.84428 1.90702 1.29132 1.44860 1.80984 1.47979 1.36777 1.41174 1.07378 1.21981 0.89919 0.87934 1.00963 1.22461 1.00954 0.96261 0.98447 1.20422 0.95853 0.84724 0.91785 0.93122 1.42593 1.05381 1.11998 1.77056 1.19572 0.88759 0.94441 1.33411 0.90438 1.25485 0.98326 0.99497 1.03622 1.69817 1.19428 1.19005 1.54043 0.85292 0.78888 0.77979 0.78106 1.20517 1.22721 1.20450 1.21521 0.98119 0.95306 0.97011 0.93241 1.21566 1.01684 1.01331 0.94080 1.21503 1.02098 0.95921 0.79790 1.24330 0.97321 0.96824 0.91862 1.77134 0.97194 1.26073 1.13400 1.48605 1.03271 1.54496 1.07440 1.22369 1.02631 1.05271 0.75292 0.90962 0.91847 0.93553 0.90960 0.93097 0.87695 0.90725 0.89140 0.88698 0.91725 0.94356 0.79857 0.94309 0.94178 0.91679 0.92174 0.89610 0.89700 0.77481 0.88952 0.87894 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 3 C -0.06 -1.02 4.69 29.85 0.14 -0.88 16 4 C 0.15 3.30 6.25 42.14 0.26 3.56 16 5 C -0.31 -8.05 5.20 -20.15 -0.10 -8.15 16 6 C 0.60 17.70 7.31 86.66 0.63 18.34 16 7 O -0.58 -19.93 15.31 -4.03 -0.06 -19.99 16 8 N -0.60 -16.81 2.98 -823.62 -2.45 -19.27 16 9 C 0.12 2.94 5.48 86.36 0.47 3.42 16 10 C -0.14 -4.75 5.66 30.67 0.17 -4.58 16 11 C 0.18 6.82 2.20 45.02 0.10 6.92 16 12 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 13 N -0.73 -35.86 4.41 -322.79 -1.42 -37.28 16 14 C -0.23 -12.38 9.93 84.03 0.83 -11.55 16 15 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 16 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 17 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 18 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 19 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 20 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 22 C -0.10 -3.31 2.44 -10.86 -0.03 -3.33 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 C -0.13 -4.19 9.03 71.98 0.65 -3.54 16 25 C 0.13 3.66 5.70 86.22 0.49 4.15 16 26 C 0.08 1.88 9.62 85.65 0.82 2.70 16 27 N -0.32 -7.40 12.50 -56.27 -0.70 -8.10 16 28 N -0.36 -6.95 3.98 -354.30 -1.41 -8.36 16 29 C 0.08 0.78 11.06 127.77 1.41 2.19 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.19 7.62 -2.39 -0.02 1.17 16 35 H 0.10 1.25 7.69 -2.39 -0.02 1.23 16 36 H 0.07 1.72 7.71 -2.39 -0.02 1.71 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.09 2.25 4.76 -2.39 -0.01 2.24 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.37 20.00 7.51 -92.71 -0.70 19.31 16 42 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.04 1.57 7.36 -2.39 -0.02 1.55 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 46 H 0.09 2.53 7.00 -2.39 -0.02 2.51 16 47 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.21 3.60 7.34 -2.91 -0.02 3.58 16 49 H 0.09 0.65 8.14 -2.38 -0.02 0.64 16 50 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 51 H 0.11 0.50 7.62 -2.39 -0.02 0.49 16 Total: -1.00 -72.06 403.67 3.70 -68.36 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 0.22 Total: 33.56 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 7.22 Total: 2.36 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -5.71 Total: -132.13 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.06 Total: -19.99 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.06 3.70 -68.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036090899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.449 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.90 seconds