Wall clock time and date at job start Tue Mar 31 2020 18:26:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50701 * 109.47212 * 2 1
4 4 C 1.34669 * 126.58739 * 85.02537 * 3 2 1
5 5 N 1.34127 * 108.01773 * 179.97438 * 4 3 2
6 6 C 1.30498 * 109.25969 * 359.97438 * 5 4 3
7 7 C 1.50698 * 125.65281 * 180.02562 * 6 5 4
8 8 C 1.50705 * 109.46901 * 304.97484 * 7 6 5
9 9 O 1.21277 * 120.00293 * 0.02562 * 8 7 6
10 10 N 1.34778 * 119.99754 * 180.02562 * 8 7 6
11 11 C 1.46927 * 120.62981 * 359.97438 * 10 8 7
12 12 C 1.53199 * 108.77289 * 126.37202 * 11 10 8
13 13 C 1.53037 * 109.31024 * 54.63767 * 12 11 10
14 14 H 1.08994 * 109.46403 * 58.65446 * 13 12 11
15 15 N 1.46504 * 109.46009 * 178.63019 * 13 12 11
16 16 C 1.36933 * 119.99545 * 275.00066 * 15 13 12
17 17 H 1.08001 * 120.00630 * 359.97438 * 16 15 13
18 18 C 1.38817 * 119.99720 * 179.97438 * 16 15 13
19 19 N 1.31618 * 119.99843 * 179.97438 * 18 16 15
20 20 Si 1.86796 * 120.00307 * 0.02562 * 18 16 15
21 21 H 1.48494 * 109.47425 * 89.99222 * 20 18 16
22 22 H 1.48493 * 109.47383 * 210.00039 * 20 18 16
23 23 H 1.48511 * 109.46768 * 329.99581 * 20 18 16
24 24 C 1.53041 * 109.53807 * 298.62972 * 13 12 11
25 25 H 1.08999 * 109.49943 * 301.42036 * 24 13 12
26 26 C 1.52996 * 109.49992 * 181.35359 * 24 13 12
27 27 C 1.53002 * 109.47525 * 175.00415 * 26 24 13
28 28 C 1.46917 * 120.63089 * 179.72512 * 10 8 7
29 29 N 1.35048 * 108.69426 * 359.77279 * 6 5 4
30 30 H 0.97005 * 126.39308 * 180.26470 * 29 6 5
31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3
32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.47153 * 299.99998 * 1 2 3
34 34 H 1.09002 * 109.47153 * 240.00002 * 2 1 3
35 35 H 1.09001 * 109.46832 * 120.00193 * 2 1 3
36 36 H 1.08005 * 125.99539 * 359.96368 * 4 3 2
37 37 H 1.08996 * 109.47329 * 64.97962 * 7 6 5
38 38 H 1.09002 * 109.47123 * 184.97716 * 7 6 5
39 39 H 1.09000 * 109.58725 * 246.15505 * 11 10 8
40 40 H 1.08994 * 109.58865 * 6.58473 * 11 10 8
41 41 H 1.09004 * 109.49550 * 174.58450 * 12 11 10
42 42 H 1.08995 * 109.49284 * 294.65084 * 12 11 10
43 43 H 0.97004 * 120.00367 * 94.98898 * 15 13 12
44 44 H 0.97001 * 119.99954 * 180.02562 * 19 18 16
45 45 H 1.09010 * 109.47288 * 295.00330 * 26 24 13
46 46 H 1.08993 * 109.47325 * 55.00050 * 26 24 13
47 47 H 1.08990 * 109.47190 * 179.97438 * 27 26 24
48 48 H 1.08996 * 109.46969 * 300.00128 * 27 26 24
49 49 H 1.09001 * 109.46981 * 59.99299 * 27 26 24
50 50 H 1.08998 * 109.58633 * 353.41551 * 28 10 8
51 51 H 1.09004 * 109.59202 * 113.84105 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2115 2.2089 1.0773
5 7 2.6708 3.3950 0.6518
6 6 2.7836 3.3718 -0.6481
7 6 3.2672 4.5108 -1.5083
8 6 2.4360 5.7371 -1.2318
9 8 1.5396 5.6910 -0.4163
10 7 2.6889 6.8852 -1.8909
11 6 3.7718 6.9568 -2.8814
12 6 3.2004 7.4900 -4.1990
13 6 2.4947 8.8234 -3.9418
14 1 3.2034 9.5330 -3.5150
15 7 1.9752 9.3524 -5.2053
16 6 2.7877 10.0903 -6.0241
17 1 3.8113 10.2827 -5.7384
18 6 2.2956 10.5911 -7.2217
19 7 3.0764 11.3008 -8.0085
20 14 0.5251 10.2592 -7.7158
21 1 -0.3464 11.3414 -7.1919
22 1 0.4242 10.2155 -9.1967
23 1 0.0897 8.9563 -7.1515
24 6 1.3365 8.6093 -2.9646
25 1 0.6399 7.8811 -3.3799
26 6 0.6107 9.9363 -2.7342
27 6 -0.6201 9.6990 -1.8569
28 6 1.8835 8.0874 -1.6367
29 7 2.4003 2.1561 -1.0942
30 1 2.3866 1.8600 -2.0179
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3635 -1.0276 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8900
36 1 2.0190 1.9340 2.1039
37 1 4.3120 4.7207 -1.2795
38 1 3.1733 4.2376 -2.5594
39 1 4.5513 7.6290 -2.5226
40 1 4.1885 5.9622 -3.0398
41 1 4.0104 7.6390 -4.9130
42 1 2.4867 6.7720 -4.6029
43 1 1.0558 9.1799 -5.4620
44 1 2.7325 11.6511 -8.8451
45 1 1.2822 10.6361 -2.2364
46 1 0.2992 10.3513 -3.6927
47 1 -1.1368 10.6444 -1.6925
48 1 -1.2915 8.9994 -2.3546
49 1 -0.3086 9.2840 -0.8984
50 1 1.0547 7.8384 -0.9740
51 1 2.5062 8.8534 -1.1745
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037866514.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:26:34
Heat of formation + Delta-G solvation = 20.659976 kcal
Electronic energy + Delta-G solvation = -29348.152423 eV
Core-core repulsion = 25476.146330 eV
Total energy + Delta-G solvation = -3872.006094 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 2.82 seconds
Orbital eigenvalues (eV)
-42.30455 -40.11995 -37.88628 -34.84194 -34.49677 -33.93535 -32.63371 -31.81340
-31.52321 -29.91211 -28.96092 -27.25352 -25.03834 -23.99435 -23.60710 -22.51909
-21.28113 -20.95070 -20.83698 -19.94814 -18.94831 -17.71631 -17.52109 -16.99031
-15.93619 -15.66105 -15.19762 -14.89339 -14.75163 -14.44602 -14.26630 -13.93634
-13.84245 -13.74013 -13.59790 -13.27614 -13.18018 -12.98213 -12.75424 -12.67721
-12.42526 -12.15550 -11.98276 -11.93657 -11.80075 -11.56345 -11.41198 -11.05603
-11.02665 -10.80770 -10.46854 -10.32643 -10.22569 -10.10975 -9.98819 -9.77878
-9.69251 -9.61241 -8.96209 -8.50476 -8.38225 -7.31175 -5.81725 -3.17061
1.79087 2.67625 2.69984 2.99026 3.25688 3.33327 3.36601 3.41984
4.11923 4.47334 4.54178 4.54627 4.59081 4.73685 4.91629 4.94137
5.03481 5.09925 5.13083 5.19588 5.21329 5.25375 5.34415 5.39739
5.46305 5.48217 5.51188 5.59050 5.60731 5.60971 5.79701 5.81391
5.91773 6.01474 6.02927 6.08372 6.09239 6.23446 6.27986 6.32973
6.45367 6.54587 6.61092 6.69021 6.78876 6.92325 7.14699 7.48095
7.94059 8.00173 8.25285 8.37487 9.15742 9.88618 10.08569 11.36534
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.016471 B = 0.002515 C = 0.002451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1699.507693 B =11132.133609 C =11421.128361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.045 4.045
3 C -0.026 4.026
4 C -0.022 4.022
5 N -0.458 5.458
6 C 0.221 3.779
7 C -0.055 4.055
8 C 0.520 3.480
9 O -0.522 6.522
10 N -0.609 5.609
11 C 0.106 3.894
12 C -0.152 4.152
13 C 0.188 3.812
14 H 0.058 0.942
15 N -0.745 5.745
16 C -0.242 4.242
17 H 0.090 0.910
18 C 0.005 3.995
19 N -0.933 5.933
20 Si 0.881 3.119
21 H -0.284 1.284
22 H -0.292 1.292
23 H -0.278 1.278
24 C -0.108 4.108
25 H 0.067 0.933
26 C -0.113 4.113
27 C -0.154 4.154
28 C 0.122 3.878
29 N -0.563 5.563
30 H 0.415 0.585
31 H 0.052 0.948
32 H 0.060 0.940
33 H 0.061 0.939
34 H 0.068 0.932
35 H 0.086 0.914
36 H 0.167 0.833
37 H 0.119 0.881
38 H 0.106 0.894
39 H 0.072 0.928
40 H 0.076 0.924
41 H 0.081 0.919
42 H 0.057 0.943
43 H 0.361 0.639
44 H 0.259 0.741
45 H 0.063 0.937
46 H 0.076 0.924
47 H 0.051 0.949
48 H 0.049 0.951
49 H 0.052 0.948
50 H 0.091 0.909
51 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.121 -20.202 14.858 25.102
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.084 4.084
3 C -0.141 4.141
4 C -0.170 4.170
5 N -0.176 5.176
6 C -0.043 4.043
7 C -0.096 4.096
8 C 0.305 3.695
9 O -0.397 6.397
10 N -0.343 5.343
11 C -0.018 4.018
12 C -0.193 4.193
13 C 0.078 3.922
14 H 0.076 0.924
15 N -0.387 5.387
16 C -0.371 4.371
17 H 0.108 0.892
18 C -0.190 4.190
19 N -0.581 5.581
20 Si 0.712 3.288
21 H -0.211 1.211
22 H -0.218 1.218
23 H -0.204 1.204
24 C -0.128 4.128
25 H 0.086 0.914
26 C -0.151 4.151
27 C -0.211 4.211
28 C 0.000 4.000
29 N -0.167 5.167
30 H 0.253 0.747
31 H 0.072 0.928
32 H 0.079 0.921
33 H 0.080 0.920
34 H 0.086 0.914
35 H 0.105 0.895
36 H 0.184 0.816
37 H 0.137 0.863
38 H 0.124 0.876
39 H 0.090 0.910
40 H 0.095 0.905
41 H 0.100 0.900
42 H 0.076 0.924
43 H 0.194 0.806
44 H 0.069 0.931
45 H 0.081 0.919
46 H 0.094 0.906
47 H 0.070 0.930
48 H 0.068 0.932
49 H 0.071 0.929
50 H 0.109 0.891
51 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -1.216 -19.394 15.749 25.013
hybrid contribution -1.385 -1.007 -1.724 2.429
sum -2.601 -20.401 14.025 24.893
Atomic orbital electron populations
1.21781 0.94410 1.01821 1.02636 1.19968 0.96081 0.89096 1.03242
1.21219 1.08902 0.96629 0.87367 1.22099 1.06152 0.90213 0.98581
1.70237 1.17477 1.21824 1.08079 1.22263 1.04406 0.86500 0.91121
1.19981 1.01408 0.89557 0.98679 1.20013 0.84519 0.83743 0.81183
1.90743 1.31625 1.83875 1.33450 1.48117 1.34499 1.10797 1.40883
1.21889 0.89078 1.01643 0.89156 1.22652 1.01540 0.99818 0.95322
1.20159 0.93099 0.92552 0.86346 0.92416 1.42788 1.11893 1.63544
1.20461 1.19047 0.95504 1.23849 0.98735 0.89173 1.24657 0.97293
0.99957 0.97132 1.69694 1.35134 1.40111 1.13151 0.86602 0.86522
0.77968 0.77722 1.21053 1.21846 1.20418 1.21761 0.98233 0.97528
0.95326 0.91433 1.21455 0.96338 0.96395 1.00889 1.21855 0.98279
1.01139 0.99872 1.21610 0.95442 0.85587 0.97387 1.43088 1.51420
1.12461 1.09689 0.74707 0.92846 0.92075 0.91977 0.91374 0.89508
0.81601 0.86323 0.87563 0.91019 0.90543 0.90040 0.92391 0.80640
0.93070 0.91861 0.90554 0.93032 0.93154 0.92859 0.89095 0.91477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16
2 C -0.05 -0.28 6.49 -27.88 -0.18 -0.46 16
3 C -0.03 -0.25 6.49 -81.61 -0.53 -0.78 16
4 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16
5 N -0.46 -6.72 10.58 -10.81 -0.11 -6.83 16
6 C 0.22 2.67 6.96 -155.41 -1.08 1.59 16
7 C -0.05 -0.55 4.67 -29.03 -0.14 -0.68 16
8 C 0.52 7.20 7.69 -10.98 -0.08 7.12 16
9 O -0.52 -9.35 14.97 5.56 0.08 -9.27 16
10 N -0.61 -7.91 2.98 -173.01 -0.52 -8.43 16
11 C 0.11 1.20 6.34 -3.71 -0.02 1.17 16
12 C -0.15 -2.26 5.66 -26.61 -0.15 -2.41 16
13 C 0.19 3.26 2.20 -67.89 -0.15 3.11 16
14 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16
15 N -0.75 -16.31 4.13 -53.38 -0.22 -16.53 16
16 C -0.24 -6.40 10.41 -15.06 -0.16 -6.55 16
17 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16
18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16
19 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16
20 Si 0.88 21.54 27.74 -169.99 -4.71 16.83 16
21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
23 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16
24 C -0.11 -1.64 1.91 -90.70 -0.17 -1.81 16
25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
26 C -0.11 -1.69 5.31 -26.73 -0.14 -1.83 16
27 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16
28 C 0.12 1.69 5.30 -3.91 -0.02 1.67 16
29 N -0.56 -5.24 6.15 -6.54 -0.04 -5.28 16
30 H 0.42 2.53 8.96 -40.82 -0.37 2.17 16
31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16
33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
36 H 0.17 1.62 8.06 -52.48 -0.42 1.20 16
37 H 0.12 0.97 7.94 -51.93 -0.41 0.55 16
38 H 0.11 0.76 7.69 -51.93 -0.40 0.36 16
39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
40 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16
41 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16
42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
43 H 0.36 7.99 5.37 -40.82 -0.22 7.77 16
44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
45 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16
46 H 0.08 1.32 7.21 -51.93 -0.37 0.95 16
47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
49 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16
50 H 0.09 1.35 5.72 -51.93 -0.30 1.06 16
51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
LS Contribution 401.43 15.07 6.05 6.05
Total: -1.00 -35.15 401.43 -9.76 -44.91
By element:
Atomic # 1 Polarization: 17.38 SS G_CDS: -8.65 Total: 8.72 kcal
Atomic # 6 Polarization: -0.08 SS G_CDS: -2.41 Total: -2.48 kcal
Atomic # 7 Polarization: -64.64 SS G_CDS: -0.12 Total: -64.75 kcal
Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -35.15 -9.76 -44.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037866514.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.566 kcal
(2) G-P(sol) polarization free energy of solvation -35.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.82 seconds