Wall clock time and date at job start Tue Mar 31 2020 18:26:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50701 * 109.47212 * 2 1
4 4 C 1.34669 * 126.58739 * 85.02537 * 3 2 1
5 5 N 1.34127 * 108.01773 * 179.97438 * 4 3 2
6 6 C 1.30498 * 109.25969 * 359.97438 * 5 4 3
7 7 C 1.50698 * 125.65281 * 180.02562 * 6 5 4
8 8 C 1.50705 * 109.46901 * 304.97484 * 7 6 5
9 9 O 1.21277 * 120.00293 * 0.02562 * 8 7 6
10 10 N 1.34778 * 119.99754 * 180.02562 * 8 7 6
11 11 C 1.46927 * 120.62981 * 359.97438 * 10 8 7
12 12 C 1.53199 * 108.77289 * 126.37202 * 11 10 8
13 13 C 1.53037 * 109.31024 * 54.63767 * 12 11 10
14 14 H 1.08994 * 109.46403 * 58.65446 * 13 12 11
15 15 N 1.46504 * 109.46009 * 178.63019 * 13 12 11
16 16 C 1.36933 * 119.99545 * 275.00066 * 15 13 12
17 17 H 1.08001 * 120.00630 * 359.97438 * 16 15 13
18 18 C 1.38817 * 119.99720 * 179.97438 * 16 15 13
19 19 N 1.31618 * 119.99843 * 179.97438 * 18 16 15
20 20 Si 1.86796 * 120.00307 * 0.02562 * 18 16 15
21 21 H 1.48494 * 109.47425 * 89.99222 * 20 18 16
22 22 H 1.48493 * 109.47383 * 210.00039 * 20 18 16
23 23 H 1.48511 * 109.46768 * 329.99581 * 20 18 16
24 24 C 1.53041 * 109.53807 * 298.62972 * 13 12 11
25 25 H 1.08999 * 109.49943 * 301.42036 * 24 13 12
26 26 C 1.52996 * 109.49992 * 181.35359 * 24 13 12
27 27 C 1.53002 * 109.47525 * 175.00415 * 26 24 13
28 28 C 1.46917 * 120.63089 * 179.72512 * 10 8 7
29 29 N 1.35048 * 108.69426 * 359.77279 * 6 5 4
30 30 H 0.97005 * 126.39308 * 180.26470 * 29 6 5
31 31 H 1.08998 * 109.47533 * 59.99628 * 1 2 3
32 32 H 1.08996 * 109.47853 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.47153 * 299.99998 * 1 2 3
34 34 H 1.09002 * 109.47153 * 240.00002 * 2 1 3
35 35 H 1.09001 * 109.46832 * 120.00193 * 2 1 3
36 36 H 1.08005 * 125.99539 * 359.96368 * 4 3 2
37 37 H 1.08996 * 109.47329 * 64.97962 * 7 6 5
38 38 H 1.09002 * 109.47123 * 184.97716 * 7 6 5
39 39 H 1.09000 * 109.58725 * 246.15505 * 11 10 8
40 40 H 1.08994 * 109.58865 * 6.58473 * 11 10 8
41 41 H 1.09004 * 109.49550 * 174.58450 * 12 11 10
42 42 H 1.08995 * 109.49284 * 294.65084 * 12 11 10
43 43 H 0.97004 * 120.00367 * 94.98898 * 15 13 12
44 44 H 0.97001 * 119.99954 * 180.02562 * 19 18 16
45 45 H 1.09010 * 109.47288 * 295.00330 * 26 24 13
46 46 H 1.08993 * 109.47325 * 55.00050 * 26 24 13
47 47 H 1.08990 * 109.47190 * 179.97438 * 27 26 24
48 48 H 1.08996 * 109.46969 * 300.00128 * 27 26 24
49 49 H 1.09001 * 109.46981 * 59.99299 * 27 26 24
50 50 H 1.08998 * 109.58633 * 353.41551 * 28 10 8
51 51 H 1.09004 * 109.59202 * 113.84105 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2115 2.2089 1.0773
5 7 2.6708 3.3950 0.6518
6 6 2.7836 3.3718 -0.6481
7 6 3.2672 4.5108 -1.5083
8 6 2.4360 5.7371 -1.2318
9 8 1.5396 5.6910 -0.4163
10 7 2.6889 6.8852 -1.8909
11 6 3.7718 6.9568 -2.8814
12 6 3.2004 7.4900 -4.1990
13 6 2.4947 8.8234 -3.9418
14 1 3.2034 9.5330 -3.5150
15 7 1.9752 9.3524 -5.2053
16 6 2.7877 10.0903 -6.0241
17 1 3.8113 10.2827 -5.7384
18 6 2.2956 10.5911 -7.2217
19 7 3.0764 11.3008 -8.0085
20 14 0.5251 10.2592 -7.7158
21 1 -0.3464 11.3414 -7.1919
22 1 0.4242 10.2155 -9.1967
23 1 0.0897 8.9563 -7.1515
24 6 1.3365 8.6093 -2.9646
25 1 0.6399 7.8811 -3.3799
26 6 0.6107 9.9363 -2.7342
27 6 -0.6201 9.6990 -1.8569
28 6 1.8835 8.0874 -1.6367
29 7 2.4003 2.1561 -1.0942
30 1 2.3866 1.8600 -2.0179
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3635 -1.0276 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8933 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8900
36 1 2.0190 1.9340 2.1039
37 1 4.3120 4.7207 -1.2795
38 1 3.1733 4.2376 -2.5594
39 1 4.5513 7.6290 -2.5226
40 1 4.1885 5.9622 -3.0398
41 1 4.0104 7.6390 -4.9130
42 1 2.4867 6.7720 -4.6029
43 1 1.0558 9.1799 -5.4620
44 1 2.7325 11.6511 -8.8451
45 1 1.2822 10.6361 -2.2364
46 1 0.2992 10.3513 -3.6927
47 1 -1.1368 10.6444 -1.6925
48 1 -1.2915 8.9994 -2.3546
49 1 -0.3086 9.2840 -0.8984
50 1 1.0547 7.8384 -0.9740
51 1 2.5062 8.8534 -1.1745
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037866514.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:26:33
Heat of formation + Delta-G solvation = -2.223302 kcal
Electronic energy + Delta-G solvation = -29349.144717 eV
Core-core repulsion = 25476.146330 eV
Total energy + Delta-G solvation = -3872.998387 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 4.49 seconds
Orbital eigenvalues (eV)
-43.08879 -41.23802 -39.15613 -36.24675 -35.41359 -35.06273 -33.59319 -33.44749
-32.34136 -31.43621 -30.08735 -28.11198 -26.44742 -25.15181 -24.31839 -24.03467
-22.25175 -22.08250 -21.73589 -21.22352 -20.08549 -19.36817 -18.50325 -17.97963
-16.98646 -16.73831 -16.56935 -16.09137 -15.88859 -15.48144 -15.20024 -15.10346
-14.93112 -14.72276 -14.64046 -14.45832 -14.41051 -14.16282 -13.91826 -13.87792
-13.42113 -13.26540 -13.04376 -12.94662 -12.88379 -12.65071 -12.54750 -12.46943
-12.11176 -12.06840 -12.03379 -11.83444 -11.61705 -11.56204 -11.09912 -10.97463
-10.93582 -10.82773 -10.73715 -9.62783 -9.24573 -9.16157 -7.98619 -5.29918
1.02422 1.38000 1.39822 1.46683 1.66403 1.84505 2.19846 2.35323
2.49938 3.31618 3.34767 3.54797 3.62564 3.81565 3.90946 3.99931
4.03887 4.05621 4.15450 4.26705 4.33737 4.37799 4.43270 4.44020
4.46942 4.55856 4.61893 4.70903 4.71246 4.76214 4.81822 4.85848
4.89576 4.95480 5.01249 5.04692 5.05646 5.17111 5.25496 5.33936
5.35449 5.41570 5.45717 5.52851 5.66812 5.82522 5.83008 6.25737
6.41568 6.54562 7.11859 7.20002 7.21818 7.89181 8.07171 9.22933
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.016471 B = 0.002515 C = 0.002451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1699.507693 B =11132.133609 C =11421.128361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.042 4.042
3 C -0.010 4.010
4 C -0.059 4.059
5 N -0.506 5.506
6 C 0.205 3.795
7 C -0.050 4.050
8 C 0.517 3.483
9 O -0.568 6.568
10 N -0.607 5.607
11 C 0.112 3.888
12 C -0.144 4.144
13 C 0.180 3.820
14 H 0.048 0.952
15 N -0.748 5.748
16 C -0.214 4.214
17 H 0.063 0.937
18 C -0.063 4.063
19 N -0.984 5.984
20 Si 0.945 3.055
21 H -0.283 1.283
22 H -0.300 1.300
23 H -0.256 1.256
24 C -0.095 4.095
25 H 0.061 0.939
26 C -0.112 4.112
27 C -0.147 4.147
28 C 0.127 3.873
29 N -0.553 5.553
30 H 0.431 0.569
31 H 0.042 0.958
32 H 0.080 0.920
33 H 0.049 0.951
34 H 0.088 0.912
35 H 0.101 0.899
36 H 0.173 0.827
37 H 0.143 0.857
38 H 0.142 0.858
39 H 0.082 0.918
40 H 0.117 0.883
41 H 0.067 0.933
42 H 0.057 0.943
43 H 0.361 0.639
44 H 0.255 0.745
45 H 0.064 0.936
46 H 0.051 0.949
47 H 0.060 0.940
48 H 0.048 0.952
49 H 0.060 0.940
50 H 0.082 0.918
51 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.453 -22.962 15.387 27.679
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.080 4.080
3 C -0.127 4.127
4 C -0.206 4.206
5 N -0.226 5.226
6 C -0.060 4.060
7 C -0.091 4.091
8 C 0.305 3.695
9 O -0.446 6.446
10 N -0.340 5.340
11 C -0.011 4.011
12 C -0.185 4.185
13 C 0.073 3.927
14 H 0.066 0.934
15 N -0.390 5.390
16 C -0.345 4.345
17 H 0.081 0.919
18 C -0.255 4.255
19 N -0.635 5.635
20 Si 0.774 3.226
21 H -0.210 1.210
22 H -0.227 1.227
23 H -0.180 1.180
24 C -0.115 4.115
25 H 0.079 0.921
26 C -0.151 4.151
27 C -0.205 4.205
28 C 0.004 3.996
29 N -0.158 5.158
30 H 0.272 0.728
31 H 0.061 0.939
32 H 0.099 0.901
33 H 0.068 0.932
34 H 0.106 0.894
35 H 0.119 0.881
36 H 0.191 0.809
37 H 0.160 0.840
38 H 0.160 0.840
39 H 0.101 0.899
40 H 0.135 0.865
41 H 0.086 0.914
42 H 0.076 0.924
43 H 0.194 0.806
44 H 0.064 0.936
45 H 0.083 0.917
46 H 0.070 0.930
47 H 0.080 0.920
48 H 0.068 0.932
49 H 0.079 0.921
50 H 0.101 0.899
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -1.540 -22.203 16.306 27.590
hybrid contribution -1.235 -0.161 -1.778 2.171
sum -2.775 -22.364 14.527 26.812
Atomic orbital electron populations
1.21762 0.94433 1.02749 1.01518 1.20101 0.95851 0.87113 1.04966
1.21687 1.06707 0.97598 0.86685 1.22413 1.07879 0.90428 0.99922
1.70148 1.19053 1.23442 1.09917 1.22531 1.04851 0.87730 0.90853
1.20103 1.01574 0.87056 1.00332 1.20666 0.84096 0.84573 0.80188
1.90729 1.33806 1.84620 1.35487 1.48174 1.34526 1.10382 1.40949
1.21972 0.88385 1.04138 0.86575 1.22457 1.00811 0.98064 0.97153
1.20416 0.93945 0.93552 0.84822 0.93419 1.42804 1.11475 1.63362
1.21330 1.19003 0.94648 1.22319 0.98553 0.91924 1.25366 1.01420
1.00950 0.97719 1.69863 1.37258 1.42565 1.13846 0.85551 0.81638
0.78735 0.76676 1.20973 1.22744 1.18044 1.21602 0.97095 0.97448
0.95338 0.92095 1.21424 0.97316 0.96265 1.00049 1.21790 0.97305
1.01725 0.99648 1.21472 0.95634 0.86345 0.96163 1.43061 1.50480
1.11703 1.10539 0.72800 0.93869 0.90133 0.93194 0.89363 0.88059
0.80948 0.83969 0.84025 0.89930 0.86459 0.91404 0.92414 0.80562
0.93615 0.91704 0.92982 0.92046 0.93235 0.92131 0.89939 0.90647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.52 9.89 71.98 0.71 -0.80 16
2 C -0.04 -0.40 6.49 29.85 0.19 -0.20 16
3 C -0.01 -0.17 6.49 40.95 0.27 0.09 16
4 C -0.06 -1.38 11.79 83.52 0.98 -0.39 16
5 N -0.51 -14.61 10.58 -188.13 -1.99 -16.60 16
6 C 0.20 4.56 6.96 138.13 0.96 5.52 16
7 C -0.05 -0.84 4.67 29.10 0.14 -0.70 16
8 C 0.52 13.22 7.69 87.66 0.67 13.90 16
9 O -0.57 -19.97 14.97 -3.02 -0.05 -20.02 16
10 N -0.61 -14.31 2.98 -819.66 -2.44 -16.75 16
11 C 0.11 2.16 6.34 86.36 0.55 2.71 16
12 C -0.14 -3.99 5.66 30.67 0.17 -3.81 16
13 C 0.18 6.09 2.20 45.02 0.10 6.19 16
14 H 0.05 1.71 8.08 -2.39 -0.02 1.70 16
15 N -0.75 -32.33 4.13 -322.81 -1.33 -33.66 16
16 C -0.21 -11.46 10.41 84.04 0.87 -10.58 16
17 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16
18 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16
19 N -0.98 -61.60 13.97 21.65 0.30 -61.29 16
20 Si 0.95 44.79 27.74 68.60 1.90 46.69 16
21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16
22 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16
23 H -0.26 -10.99 6.52 99.48 0.65 -10.35 16
24 C -0.09 -2.76 1.91 -10.85 -0.02 -2.78 16
25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
26 C -0.11 -3.29 5.31 30.59 0.16 -3.12 16
27 C -0.15 -3.66 9.67 71.98 0.70 -2.96 16
28 C 0.13 3.33 5.30 86.24 0.46 3.79 16
29 N -0.55 -8.96 6.15 -174.61 -1.07 -10.03 16
30 H 0.43 3.86 8.96 -92.70 -0.83 3.03 16
31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16
33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16
34 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16
35 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16
36 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16
37 H 0.14 1.73 7.94 -2.39 -0.02 1.71 16
38 H 0.14 1.33 7.69 -2.39 -0.02 1.31 16
39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
40 H 0.12 1.38 5.93 -2.39 -0.01 1.37 16
41 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16
42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.36 15.57 5.37 -92.71 -0.50 15.07 16
44 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16
45 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16
46 H 0.05 1.78 7.21 -2.39 -0.02 1.76 16
47 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16
48 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16
49 H 0.06 1.42 6.70 -2.39 -0.02 1.40 16
50 H 0.08 2.37 5.72 -2.39 -0.01 2.36 16
51 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
Total: -1.00 -79.59 401.43 2.25 -77.34
By element:
Atomic # 1 Polarization: 31.10 SS G_CDS: -0.45 Total: 30.65 kcal
Atomic # 6 Polarization: -3.71 SS G_CDS: 7.39 Total: 3.68 kcal
Atomic # 7 Polarization: -131.80 SS G_CDS: -6.54 Total: -138.34 kcal
Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 1.90 Total: 46.69 kcal
Total: -79.59 2.25 -77.34 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037866514.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.114 kcal
(2) G-P(sol) polarization free energy of solvation -79.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.337 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.223 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.49 seconds